Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004332.1

Orthogroup ID

OG0001898

Physical Location & Seq

Genomic Coordinates Reverse (-)

557 .. 1065

Gene Structure 509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004332.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 431 bp

ccatgaacactctctggcgcaccggcggcttcctcaccaatagtcacagccctaagaagttcaggtctcgctggaagaagattgtcttcggaccgactcagccgccggactgcctcgtggttttctactccgagaggaagtcgtcggtgattttggaggcgcataggttgcagattccgattgtttcgcttgtggactcagacatgcctatcgagtactacaacaagatcacgtatccgattccgtgtaattcctcggtacaatttgtgtacctgttctgcaatttgatcaccaagacgttcatgcttcagcagaagaaaagcggtggcgattcggccgaaattgagactagtgagcgagtgggggttatagaggaggctaagtgcgcaaagaaggatgaggtgcttatggttcaatcaattaaaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

142

Amino Acids

16.18

Weight (kDa)

9.06

Isoelectric Point (pI)

58.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03600
fragaria_vesca	FvH4_7g08140
malus_domestica	MD02G1230600.v1.1
prunus_persica	Prupe.2G107500_v2.0.a1
pyrus_communis	pycom02g19970 pycom07g06540
rosa_chinensis	RchiOBHm_Chr1g0341081 RchiOBHm_Chr1g0363821 RchiOBHm_Chr1g0383121 RchiOBHm_Chr2g0085551 RchiOBHm_Chr3g0481141 RchiOBHm_Chr5g0027611 RchiOBHm_Chr5g0054321 RchiOBHm_Chr6g0246101
rosa_laevigata	RLG00000003952 RLG00000006546 RLG00000013359 RLG00000020654 RLG00000029063
rosa_multiflora	Rmu_sc0000533.1_g000047 Rmu_sc0000821.1_g000002 Rmu_sc0001211.1_g000068 Rmu_sc0002200.1_g000002 Rmu_sc0004332.1_g000001 Rmu_sc0004577.1_g000014 Rmu_sc0008563.1_g000010 Rmu_sc0012351.1_g000004 Rmu_ssc0000190.1_g000008
rosa_roxburghii	Rroxscaffold_1G00011600 Rroxscaffold_4G00311710
rosa_rugosa	Rorug01G0160000.1 Rorug05G0092000
rosa_samantha	Rh1AG174300 Rh1BG142600 Rh1BG221400 Rh1CG162100 Rh1CG365900 Rh1DG174200 Rh1DG248400 Rh1DG383600 Rh3AG240800 Rh5AG444100 Rh5DG194400
rosa_wichuraiana	Rw1G014550 Rw4G015450 Rw5G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	387
AciI	CCGC	3 cut(s)	26, 103, 323
AcoI	YGGCCR	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	292
AfaI	GTAC	3 cut(s)	217, 260, 271
AgsI	TTSAA	1 cut(s)	415
AhlI	ACTAGT	1 cut(s)	349
Alw26I	GTCTC	2 cut(s)	71, 340
AoxI	GGCC	1 cut(s)	335
AspLEI	GCGC	3 cut(s)	20, 162, 388
AspS9I	GGNCC	1 cut(s)	91
AsuHPI	GGTGA	3 cut(s)	27, 159, 282
AvaII	GGWCC	1 cut(s)	91
BauI	CACGAG	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	78
BciVI	GTATCC	1 cut(s)	245
BclI	TGATCA	1 cut(s)	287
BcoDI	GTCTC	2 cut(s)	71, 340
BcuI	ACTAGT	1 cut(s)	349
BfaI	CTAG	1 cut(s)	350
BfuI	GTATCC	1 cut(s)	245
BisI	GCNGC	2 cut(s)	27, 103
BlsI	GCNGC	2 cut(s)	28, 104
BmcAI	AGTACT	1 cut(s)	217
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	78
BsaAI	YACGTR	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bse118I	RCCGGY	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	1 cut(s)	402
BseMII	CTCAG	2 cut(s)	112, 212
BseRI	GAGGAG	1 cut(s)	388
BseX3I	CGGCCG	1 cut(s)	335
Bsh1285I	CGRYCG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	337
BsiEI	CGRYCG	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	23, 106
BsmAI	GTCTC	2 cut(s)	71, 340
BsnI	GGCC	1 cut(s)	337
Bso31I	GGTCTC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	227, 287
BspACI	CCGC	3 cut(s)	26, 103, 323
BspANI	GGCC	1 cut(s)	337
BspCNI	CTCAG	2 cut(s)	111, 211
BspTNI	GGTCTC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	2 cut(s)	227, 287
BssSI	CACGAG	1 cut(s)	115
Bst2BI	CACGAG	1 cut(s)	115
BstAPI	GCANNNNNTGC	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	233
BstDEI	CTNAG	4 cut(s)	53, 98, 198, 380
BstF5I	GGATG	1 cut(s)	402
BstHHI	GCGC	3 cut(s)	20, 162, 388
BstKTI	GATC	2 cut(s)	230, 290
BstMAI	GTCTC	2 cut(s)	71, 340
BstMBI	GATC	2 cut(s)	227, 287
BstMCI	CGRYCG	1 cut(s)	338
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 168, 385
BstNSI	RCATGY	1 cut(s)	207
BstV2I	GAAGAC	1 cut(s)	78
BstZI	CGGCCG	1 cut(s)	335
BsuI	GTATCC	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	402
CfoI	GCGC	3 cut(s)	20, 162, 388
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	91
CpoI	CGGWCCG	1 cut(s)	91
Csp6I	GTAC	3 cut(s)	216, 259, 270
CspI	CGGWCCG	1 cut(s)	91
CviAII	CATG	3 cut(s)	3, 204, 303
CviJI	RGCY	5 cut(s)	29, 50, 102, 337, 379
CviKI_1	RGCY	5 cut(s)	29, 50, 102, 337, 379
CviQI	GTAC	3 cut(s)	216, 259, 270
DdeI	CTNAG	4 cut(s)	53, 98, 198, 380
DpnI	GATC	2 cut(s)	229, 289
DpnII	GATC	2 cut(s)	227, 287
EaeI	YGGCCR	1 cut(s)	335
EagI	CGGCCG	1 cut(s)	335
EclXI	CGGCCG	1 cut(s)	335
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	91
Eco52I	CGGCCG	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	292
FaeI	CATG	3 cut(s)	6, 207, 306
FaiI	YATR	6 cut(s)	4, 164, 205, 304, 370, 409
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FatI	CATG	3 cut(s)	2, 203, 302
FbaI	TGATCA	1 cut(s)	287
Fnu4HI	GCNGC	2 cut(s)	27, 103
FokI	GGATG	1 cut(s)	409
Fsp4HI	GCNGC	2 cut(s)	27, 103
FspBI	CTAG	1 cut(s)	350
FspI	TGCGCA	1 cut(s)	387
GlaI	GCGC	3 cut(s)	19, 161, 387
GluI	GCNGC	2 cut(s)	27, 103
HaeIII	GGCC	1 cut(s)	337
HapII	CCGG	2 cut(s)	23, 106
HhaI	GCGC	3 cut(s)	20, 162, 388
Hin1II	CATG	3 cut(s)	6, 207, 306
Hin6I	GCGC	3 cut(s)	18, 160, 386
HinP1I	GCGC	3 cut(s)	18, 160, 386
HinfI	GANTC	5 cut(s)	96, 174, 196, 240, 331
HpaII	CCGG	2 cut(s)	23, 106
HphI	GGTGA	3 cut(s)	27, 159, 282
Hpy166II	GTNNAC	2 cut(s)	195, 270
Hpy188I	TCNGA	5 cut(s)	91, 132, 179, 201, 239
Hpy8I	GTNNAC	2 cut(s)	195, 270
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	1 cut(s)	387
HpyCH4IV	ACGT	2 cut(s)	232, 298
HpyCH4V	TGCA	2 cut(s)	171, 281
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 168, 385
HpyF3I	CTNAG	4 cut(s)	53, 98, 198, 380
HpySE526I	ACGT	2 cut(s)	232, 298
Hsp92II	CATG	3 cut(s)	6, 207, 306
HspAI	GCGC	3 cut(s)	18, 160, 386
Ksp22I	TGATCA	1 cut(s)	287
Kzo9I	GATC	2 cut(s)	227, 287
LpnPI	CCDG	5 cut(s)	36, 48, 57, 119, 286
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	2 cut(s)	232, 298
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	2 cut(s)	229, 289
MboI	GATC	2 cut(s)	227, 287
MboII	GAAGA	4 cut(s)	78, 87, 90, 327
MluCI	AATT	5 cut(s)	249, 262, 282, 341, 419
MlyI	GAGTC	2 cut(s)	90, 190
MnlI	CCTC	8 cut(s)	43, 124, 128, 150, 264, 366, 369, 393
MseI	TTAA	1 cut(s)	422
MspI	CCGG	2 cut(s)	23, 106
MwoI	GCNNNNNNNGC	3 cut(s)	26, 168, 385
NdeII	GATC	2 cut(s)	227, 287
NlaIII	CATG	3 cut(s)	6, 207, 306
NmuCI	GTSAC	1 cut(s)	43
NsbI	TGCGCA	1 cut(s)	387
NspI	RCATGY	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	174, 240, 331
PkrI	GCNGC	2 cut(s)	28, 104
PleI	GAGTC	2 cut(s)	90, 190
PpsI	GAGTC	2 cut(s)	90, 190
Ppu21I	YACGTR	1 cut(s)	233
PspPI	GGNCC	1 cut(s)	91
RsaI	GTAC	3 cut(s)	217, 260, 271
RsaNI	GTAC	3 cut(s)	216, 259, 270
Rsr2I	CGGWCCG	1 cut(s)	91
RsrII	CGGWCCG	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	422
SatI	GCNGC	2 cut(s)	27, 103
Sau3AI	GATC	2 cut(s)	227, 287
Sau96I	GGNCC	1 cut(s)	91
ScaI	AGTACT	1 cut(s)	217
SchI	GAGTC	2 cut(s)	90, 190
SetI	ASST	6 cut(s)	67, 169, 235, 275, 301, 404
SgrAI	CRCCGGYG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	91
SpeI	ACTAGT	1 cut(s)	349
Sse9I	AATT	5 cut(s)	249, 262, 282, 341, 419
SsiI	CCGC	3 cut(s)	26, 103, 323
SspMI	CTAG	1 cut(s)	350
TaiI	ACGT	2 cut(s)	235, 301
TaqI	TCGA	1 cut(s)	212
TaqII	GACCGA	1 cut(s)	108
TasI	AATT	5 cut(s)	249, 262, 282, 341, 419
TatI	WGTACW	1 cut(s)	215
TauI	GCSGC	2 cut(s)	29, 105
TfiI	GAWTC	3 cut(s)	174, 240, 331
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TseFI	GTSAC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	19, 291
TspGWI	ACGGA	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	91
XceI	RCATGY	1 cut(s)	207
XspI	CTAG	1 cut(s)	350
ZrmI	AGTACT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.