Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001898

Physical Location & Seq

Genomic Coordinates Reverse (-)

60433026 .. 60433532

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG383600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAACACTCTCTGGCGCACCGGCGGCTTCCTCACCAATAGTCACAGCCTTAAGAAATTCAGGTCTCGCCGGAAGAAGATCGTCTTCGGACCGACTCAGTCGCCGGACTGCCTCATGGTTTTCGACTCCGAGAGGAAGTCGTCGGTGATTCTCGAGGCGCATAGGTTGCAGGTTTCGATTGTTTCGCTTGTGGACTCGGACATGCCTATCGAGTACTACAACAAGATCACATATCTGATTCCATGTAATTCATTGGTGCAATTTGTGTACCTGTTCTGCAATTTGATCACCAAGACGTTCATGCTTCAACAGAAGAAAAGCGGCGCCGATTCTGCCGAAATTGAGACTAGTGAGCGAGTGGGGGTTATAGAGGAGGCTAAGAGCGCAAAGAAGGATGAGGTGCTTATGGTTCAATCAATTAAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

142

Amino Acids

16.16

Weight (kDa)

9.17

Isoelectric Point (pI)

54.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	32 - 99	2.6e-08	Ribosomal protein S2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03600
fragaria_vesca	FvH4_7g08140
malus_domestica	MD02G1230600.v1.1
prunus_persica	Prupe.2G107500_v2.0.a1
pyrus_communis	pycom02g19970 pycom07g06540
rosa_chinensis	RchiOBHm_Chr1g0341081 RchiOBHm_Chr1g0363821 RchiOBHm_Chr1g0383121 RchiOBHm_Chr2g0085551 RchiOBHm_Chr3g0481141 RchiOBHm_Chr5g0027611 RchiOBHm_Chr5g0054321 RchiOBHm_Chr6g0246101
rosa_laevigata	RLG00000003952 RLG00000006546 RLG00000013359 RLG00000020654 RLG00000029063
rosa_multiflora	Rmu_sc0000533.1_g000047 Rmu_sc0000821.1_g000002 Rmu_sc0001211.1_g000068 Rmu_sc0002200.1_g000002 Rmu_sc0004332.1_g000001 Rmu_sc0004577.1_g000014 Rmu_sc0008563.1_g000010 Rmu_sc0012351.1_g000004 Rmu_ssc0000190.1_g000008
rosa_roxburghii	Rroxscaffold_1G00011600 Rroxscaffold_4G00311710
rosa_rugosa	Rorug01G0160000.1 Rorug05G0092000
rosa_samantha	Rh1AG174300 Rh1BG142600 Rh1BG221400 Rh1CG162100 Rh1CG365900 Rh1DG174200 Rh1DG248400 Rh1DG383600 Rh3AG240800 Rh5AG444100 Rh5DG194400
rosa_wichuraiana	Rw1G014550 Rw4G015450 Rw5G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	160
AccB1I	GGYRCC	1 cut(s)	323
AciI	CCGC	2 cut(s)	24, 321
AcsI	RAATTY	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	2 cut(s)	215, 269
AflII	CTTAAG	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	308, 413
AhlI	ACTAGT	1 cut(s)	347
Alw26I	GTCTC	2 cut(s)	69, 338
Ama87I	CYCGRG	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	56
AspLEI	GCGC	4 cut(s)	18, 160, 326, 386
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	3 cut(s)	25, 157, 280
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	76
BclI	TGATCA	1 cut(s)	285
BcoDI	GTCTC	2 cut(s)	69, 338
BcuI	ACTAGT	1 cut(s)	347
BfaI	CTAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	327
BfrI	CTTAAG	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	160
BisI	GCNGC	2 cut(s)	25, 322
BlsI	GCNGC	2 cut(s)	26, 323
BmcAI	AGTACT	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	76
BsaHI	GRCGYC	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	69
Bse118I	RCCGGY	1 cut(s)	20
BseGI	GGATG	1 cut(s)	400
BseMII	CTCAG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	386
BshNI	GGYRCC	1 cut(s)	323
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	3 cut(s)	21, 70, 104
BsmAI	GTCTC	2 cut(s)	69, 338
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	152
Bsp143I	GATC	3 cut(s)	78, 225, 285
BspACI	CCGC	2 cut(s)	24, 321
BspCNI	CTCAG	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	323
BspTI	CTTAAG	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	20
BssMI	GATC	3 cut(s)	78, 225, 285
BssNI	GRCGYC	1 cut(s)	324
BstACI	GRCGYC	1 cut(s)	324
BstAFI	CTTAAG	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	166
BstDEI	CTNAG	2 cut(s)	96, 378
BstF5I	GGATG	1 cut(s)	400
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	4 cut(s)	18, 160, 326, 386
BstKTI	GATC	3 cut(s)	81, 228, 288
BstMAI	GTCTC	2 cut(s)	69, 338
BstMBI	GATC	3 cut(s)	78, 225, 285
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 166, 332, 383
BstNSI	RCATGY	1 cut(s)	205
BstV2I	GAAGAC	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	400
BveI	ACCTGC	1 cut(s)	160
CfoI	GCGC	4 cut(s)	18, 160, 326, 386
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	89
CpoI	CGGWCCG	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	214, 268
CspI	CGGWCCG	1 cut(s)	89
CviAII	CATG	4 cut(s)	115, 202, 243, 301
CviJI	RGCY	3 cut(s)	27, 48, 377
CviKI_1	RGCY	3 cut(s)	27, 48, 377
CviQI	GTAC	2 cut(s)	214, 268
DdeI	CTNAG	2 cut(s)	96, 378
DinI	GGCGCC	1 cut(s)	325
DpnI	GATC	3 cut(s)	80, 227, 287
DpnII	GATC	3 cut(s)	78, 225, 285
Eco31I	GGTCTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	152
EgeI	GGCGCC	1 cut(s)	325
EheI	GGCGCC	1 cut(s)	325
FaeI	CATG	4 cut(s)	118, 205, 246, 304
FaiI	YATR	8 cut(s)	116, 162, 203, 232, 244, 302, 368, 407
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	4 cut(s)	114, 201, 242, 300
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	2 cut(s)	25, 322
FokI	GGATG	1 cut(s)	407
Fsp4HI	GCNGC	2 cut(s)	25, 322
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	4 cut(s)	17, 159, 325, 385
GluI	GCNGC	2 cut(s)	25, 322
HaeII	RGCGCY	1 cut(s)	327
HapII	CCGG	3 cut(s)	21, 70, 104
HhaI	GCGC	4 cut(s)	18, 160, 326, 386
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	4 cut(s)	118, 205, 246, 304
Hin6I	GCGC	4 cut(s)	16, 158, 324, 384
HinP1I	GCGC	4 cut(s)	16, 158, 324, 384
HinfI	GANTC	6 cut(s)	94, 125, 148, 194, 238, 329
HpaII	CCGG	3 cut(s)	21, 70, 104
HphI	GGTGA	3 cut(s)	25, 157, 280
Hpy166II	GTNNAC	2 cut(s)	193, 268
Hpy188I	TCNGA	4 cut(s)	89, 130, 199, 237
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	2 cut(s)	193, 268
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	3 cut(s)	169, 259, 279
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 166, 332, 383
HpyF3I	CTNAG	2 cut(s)	96, 378
HpySE526I	ACGT	1 cut(s)	296
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	4 cut(s)	118, 205, 246, 304
HspAI	GCGC	4 cut(s)	16, 158, 324, 384
KasI	GGCGCC	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	78, 225, 285
LpnPI	CCDG	6 cut(s)	34, 46, 83, 117, 155, 284
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	3 cut(s)	80, 227, 287
MboI	GATC	3 cut(s)	78, 225, 285
MboII	GAAGA	4 cut(s)	76, 85, 88, 325
MluCI	AATT	6 cut(s)	56, 247, 260, 280, 339, 417
Mly113I	GGCGCC	1 cut(s)	324
MlyI	GAGTC	3 cut(s)	88, 119, 188
MnlI	CCTC	7 cut(s)	41, 122, 126, 148, 364, 367, 391
MseI	TTAA	2 cut(s)	51, 420
MspCI	CTTAAG	1 cut(s)	50
MspI	CCGG	3 cut(s)	21, 70, 104
MwoI	GCNNNNNNNGC	4 cut(s)	24, 166, 332, 383
NarI	GGCGCC	1 cut(s)	324
NdeII	GATC	3 cut(s)	78, 225, 285
NlaIII	CATG	4 cut(s)	118, 205, 246, 304
NlaIV	GGNNCC	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	152
PfeI	GAWTC	3 cut(s)	148, 238, 329
PflFI	GACNNNGTC	1 cut(s)	97
PkrI	GCNGC	2 cut(s)	26, 323
PleI	GAGTC	3 cut(s)	88, 119, 188
PluTI	GGCGCC	1 cut(s)	327
PpsI	GAGTC	3 cut(s)	88, 119, 188
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	89
PsyI	GACNNNGTC	1 cut(s)	97
RsaI	GTAC	2 cut(s)	215, 269
RsaNI	GTAC	2 cut(s)	214, 268
Rsr2I	CGGWCCG	1 cut(s)	89
RsrII	CGGWCCG	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	51, 420
SatI	GCNGC	2 cut(s)	25, 322
Sau3AI	GATC	3 cut(s)	78, 225, 285
Sau96I	GGNCC	1 cut(s)	89
ScaI	AGTACT	1 cut(s)	215
SchI	GAGTC	3 cut(s)	88, 119, 188
SetI	ASST	6 cut(s)	65, 167, 174, 273, 299, 402
SfoI	GGCGCC	1 cut(s)	325
Sfr274I	CTCGAG	1 cut(s)	152
SgrAI	CRCCGGYG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	89
SlaI	CTCGAG	1 cut(s)	152
SmlI	CTYRAG	2 cut(s)	50, 152
SmoI	CTYRAG	2 cut(s)	50, 152
SpeI	ACTAGT	1 cut(s)	347
Sse9I	AATT	6 cut(s)	56, 247, 260, 280, 339, 417
SsiI	CCGC	2 cut(s)	24, 321
SspDI	GGCGCC	1 cut(s)	323
SspMI	CTAG	1 cut(s)	348
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	4 cut(s)	123, 153, 176, 210
TaqII	GACCGA	1 cut(s)	106
TasI	AATT	6 cut(s)	56, 247, 260, 280, 339, 417
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	2 cut(s)	27, 324
TfiI	GAWTC	3 cut(s)	148, 238, 329
Tru1I	TTAA	2 cut(s)	51, 420
Tru9I	TTAA	2 cut(s)	51, 420
TseFI	GTSAC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	3 cut(s)	17, 240, 289
Tth111I	GACNNNGTC	1 cut(s)	97
Vha464I	CTTAAG	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	56
XceI	RCATGY	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	152
XspI	CTAG	1 cut(s)	348
ZrmI	AGTACT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.