Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001898

Physical Location & Seq

Genomic Coordinates Reverse (-)

34225181 .. 34232607

Gene Structure 7427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1779 bp

ATGACGCTCCACTCCATAGTAATCCAGAAGCTTCTGAGCACCAACGCCCATTTGGGCCGGCGCGTCGCGGCCCACCACTTCAAGCAGTTCACCTTCGGCCACCGCAACGGCATGGCCGTCGTCGACTCCGACCGGACCCTCATCTGCCTCCGCAACGCCGCCCAATTCATCGCCGCCATGGCCGAGAACAAGGCCCGCTTCATGTTCGTCAACACCAACTCGCTCTGGGACGAAATCGTCGAACAAATGACCAAGAAGATCGGCTGCTACTCTCCCTCCATGAACACTCTCTGGCGCACCGGCGGCTTCCTCACCAATAGTCACAGCCCGAAGAAGTTCAGGTCTCGCCGGAAGAAGATCGTCTTCGGACCGACTCAGCCGCCGGACTGCCTCGTGGTTTTCGACTCCGAGAGGAAGTCGTCGGTGATTCTGGAGGCGCATAGGTTGCAGATTCCGATTGTCTCGCTTGTGGACTCGGACATGCCTATCGAGTACTACAACAAGATCACGTATCCGATTCCGTGTAATTCCTCGGTGCAATTTGTGTACCTGTTCTGCAATTTGATCACCAAGACGTTCTTGCTTCAGCAGAAGAAGAGCGGCGCCGTTTCGGCCGAAATTGAGACCAGTGAGCGAGTGGGGGTTATAGAGGAGGCTAAGAGCGCAAAGAAGGATGAGTTGCTTGTGGTTCCTTACGAATTCTTACACATTTCTACTGATGTTGAGAAAATTGAGGAGATGCTGGACAAGCTTGTTGTGATCAAGTTCAATGGAGGTTTGGGTACAAGTATGGGATTCGGTGGCCCCAAGTCAACAATGGAAATTTTTGATGGGTTGACATCTCTTGACTTAATTGTTAATCAAATTGAGTCTCTCAATTCTAAGTATCACTGCAGTGTTCCTTTGGTCTTTGTGAACACAGATAGTACACATGAAGATACGCTGAAGGTTTTGGAGAAATATTCCAATTCGGACATTGATATTCAGTCTATTAAACAGACTCAACATCCACAGCTCAAGTCACAGGGAGGACAGAGTGGTGAGGATGAACTGTATGTCATCATTCCTATCGTGTCTAGTCCTGGTGTCCCCTCTGGCCACGGAGCAGTATTGCTTTCGCTTGTGAAAAATGGAACCCTTGATGTCCTATTATCAAAGGGGAAGGAGTATGTCCTTGTGGTTGACTCGGATAATGTGGCTGCTAAAATTGACCCAAGTATCCTTGCCATAGTCACACCTACCTCCTCATATGATTCAGATTTGATTGGTTCACGCCTACTGAAGTTTGAGCTTGCAGAAATAGCTCAGAATTCCGTCAAAGATACGGGGAAATTCAAACTTGTCGATACTGGCAGCTTGTGGTTGAATGTTAGAGCCATTAAAAGGCTTTTGGATACAGATGAACTAAAGATTGAAGATTTCTCTGTTTCGAAGGAAACAGAGTCTGATCAAGTTCTTCTGCAAGAAACAGCAGTTGGTTCAGCAATACGGTTCTTCAATAATGCTGTTGGTGTCAACGTTCCTAATTCTCAATTTCTTTCAATGAAAAAAACATCAGATCTACTTCTGCTAAAGGTGAGTGGCCTTCTAAGTCGCTTTAAGTCCATGCCCGACATTATTGACCTGGACAGCTTGAAGGTCACTGGTGATGTTTGGTTTGGAGCTGGTATAACTCTCAAGGGGAGAGTAACAATTCATGCAGAACCTGGGATGAAATTGGAAATTCCTGATGGAGTAGTACTAGAGAATGAGGATATTAAGGATCCTTCAGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

592

Amino Acids

65.5

Weight (kDa)

5.96

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	11 - 112	3.2e-14	Ribosomal protein S2
Ribosomal_S2	PF00318	126 - 192	6.2e-10	Ribosomal protein S2
UDPGP	PF01704	217 - 412	9.5e-48	UTP--glucose-1-phosphate uridylyltransferase
UDPGP	PF01704	430 - 525	6.1e-21	UTP--glucose-1-phosphate uridylyltransferase
UDPGP	PF01704	525 - 560	7e-06	UTP--glucose-1-phosphate uridylyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03600
fragaria_vesca	FvH4_7g08140
malus_domestica	MD02G1230600.v1.1
prunus_persica	Prupe.2G107500_v2.0.a1
pyrus_communis	pycom02g19970 pycom07g06540
rosa_chinensis	RchiOBHm_Chr1g0341081 RchiOBHm_Chr1g0363821 RchiOBHm_Chr1g0383121 RchiOBHm_Chr2g0085551 RchiOBHm_Chr3g0481141 RchiOBHm_Chr5g0027611 RchiOBHm_Chr5g0054321 RchiOBHm_Chr6g0246101
rosa_laevigata	RLG00000003952 RLG00000006546 RLG00000013359 RLG00000020654 RLG00000029063
rosa_multiflora	Rmu_sc0000533.1_g000047 Rmu_sc0000821.1_g000002 Rmu_sc0001211.1_g000068 Rmu_sc0002200.1_g000002 Rmu_sc0004332.1_g000001 Rmu_sc0004577.1_g000014 Rmu_sc0008563.1_g000010 Rmu_sc0012351.1_g000004 Rmu_ssc0000190.1_g000008
rosa_roxburghii	Rroxscaffold_1G00011600 Rroxscaffold_4G00311710
rosa_rugosa	Rorug01G0160000.1 Rorug05G0092000
rosa_samantha	Rh1AG174300 Rh1BG142600 Rh1BG221400 Rh1CG162100 Rh1CG365900 Rh1DG174200 Rh1DG248400 Rh1DG383600 Rh3AG240800 Rh5AG444100 Rh5DG194400
rosa_wichuraiana	Rw1G014550 Rw4G015450 Rw5G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	602
AccBSI	CCGCTC	1 cut(s)	600
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	2 cut(s)	63, 68
AciI	CCGC	9 cut(s)	68, 103, 151, 159, 174, 196, 303, 380, 600
AclI	AACGTT	1 cut(s)	1518
AclWI	GGATC	2 cut(s)	1757, 1770
AcoI	YGGCCR	5 cut(s)	97, 114, 180, 612, 1096
AcsI	RAATTY	5 cut(s)	698, 822, 1309, 1331, 1722
AcuI	CTGAAG	4 cut(s)	569, 965, 1301, 1752
AcyI	GRCGYC	1 cut(s)	603
AfaI	GTAC	5 cut(s)	494, 548, 784, 928, 1740
AfiI	CCNNNNNNNGG	1 cut(s)	1383
AgsI	TTSAA	8 cut(s)	82, 769, 1336, 1366, 1415, 1498, 1542, 1636
AjnI	CCWGG	3 cut(s)	1081, 1623, 1705
AjuI	GAANNNNNNNTTGG	2 cut(s)	1458, 1490
AleI	CACNNNNGTG	1 cut(s)	894
AluBI	AGCT	8 cut(s)	31, 751, 1015, 1291, 1304, 1356, 1632, 1664
AluI	AGCT	8 cut(s)	31, 751, 1015, 1291, 1304, 1356, 1632, 1664
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	4 cut(s)	348, 466, 617, 876
AlwI	GGATC	2 cut(s)	1757, 1770
AlwNI	CAGNNNCTG	2 cut(s)	1445, 1706
ApeKI	GCWGC	3 cut(s)	264, 1199, 1353
ApoI	RAATTY	5 cut(s)	698, 822, 1309, 1331, 1722
Asp700I	GAANNNNTTC	1 cut(s)	335
AspLEI	GCGC	5 cut(s)	63, 297, 439, 605, 665
AspS9I	GGNCC	6 cut(s)	55, 70, 135, 193, 368, 803
AsuHPI	GGTGA	7 cut(s)	82, 304, 436, 559, 1052, 1588, 1658
AsuII	TTCGAA	1 cut(s)	1430
AvaII	GGWCC	2 cut(s)	135, 368
BaeI	ACNNNNGTAYC	2 cut(s)	1201, 1234
BalI	TGGCCA	1 cut(s)	1098
BamHI	GGATCC	1 cut(s)	1762
BanI	GGYRCC	1 cut(s)	602
BauI	CACGAG	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	3 cut(s)	251, 1186, 1365
BccI	CCATC	2 cut(s)	824, 1724
BceAI	ACGGC	3 cut(s)	101, 124, 590
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciT130I	CCWGG	3 cut(s)	1083, 1625, 1707
BciVI	GTATCC	3 cut(s)	522, 1229, 1387
BclI	TGATCA	3 cut(s)	564, 759, 1447
BcoDI	GTCTC	4 cut(s)	348, 466, 617, 876
BfaI	CTAG	2 cut(s)	1077, 1742
BfmI	CTRYAG	1 cut(s)	892
BfoI	RGCGCY	1 cut(s)	606
BfuI	GTATCC	3 cut(s)	522, 1229, 1387
BglI	GCCNNNNNGGC	2 cut(s)	179, 611
BglII	AGATCT	1 cut(s)	1558
BisI	GCNGC	9 cut(s)	69, 159, 174, 265, 304, 380, 601, 1200, 1354
BlsI	GCNGC	9 cut(s)	70, 160, 175, 266, 305, 381, 602, 1201, 1355
BmcAI	AGTACT	2 cut(s)	494, 1740
Bme1390I	CCNGG	3 cut(s)	1083, 1625, 1707
Bme18I	GGWCC	2 cut(s)	135, 368
BmgT120I	GGNCC	6 cut(s)	55, 70, 135, 193, 368, 803
BmiI	GGNNCC	6 cut(s)	137, 604, 690, 805, 1135, 1764
BmrFI	CCNGG	3 cut(s)	1083, 1625, 1707
BmsI	GCATC	1 cut(s)	729
BpiI	GAAGAC	1 cut(s)	355
BpmI	CTGGAG	1 cut(s)	452
Bpu14I	TTCGAA	1 cut(s)	1430
BpuEI	CTTGAG	2 cut(s)	1001, 1661
BsaAI	YACGTR	1 cut(s)	510
BsaHI	GRCGYC	1 cut(s)	603
BsaI	GGTCTC	2 cut(s)	348, 617
BsaJI	CCNNGG	4 cut(s)	177, 531, 1099, 1706
BsaWI	WCCGGW	1 cut(s)	132
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	1383
Bse118I	RCCGGY	2 cut(s)	57, 299
Bse1I	ACTGG	3 cut(s)	627, 1354, 1648
BseBI	CCWGG	3 cut(s)	1083, 1625, 1707
BseDI	CCNNGG	4 cut(s)	177, 531, 1099, 1706
BseGI	GGATG	4 cut(s)	679, 1006, 1051, 1716
BseLI	CCNNNNNNNGG	1 cut(s)	1383
BseMII	CTCAG	3 cut(s)	26, 389, 1319
BseNI	ACTGG	3 cut(s)	627, 1354, 1648
BseRI	GAGGAG	3 cut(s)	665, 749, 1234
BseX3I	CGGCCG	1 cut(s)	612
BseXI	GCAGC	3 cut(s)	251, 1186, 1365
Bsh1236I	CGCG	2 cut(s)	63, 68
Bsh1285I	CGRYCG	2 cut(s)	133, 615
BshNI	GGYRCC	1 cut(s)	602
BsiEI	CGRYCG	2 cut(s)	133, 615
BsiHKAI	GWGCWC	1 cut(s)	41
BsiSI	CCGG	5 cut(s)	58, 133, 300, 349, 383
BslFI	GGGAC	2 cut(s)	242, 1073
BslI	CCNNNNNNNGG	1 cut(s)	1383
BsmAI	GTCTC	4 cut(s)	348, 466, 617, 876
BsmFI	GGGAC	2 cut(s)	242, 1073
Bso31I	GGTCTC	2 cut(s)	348, 617
Bsp119I	TTCGAA	1 cut(s)	1430
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	8 cut(s)	258, 357, 504, 564, 759, 1447, 1558, 1762
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	9 cut(s)	68, 103, 151, 159, 174, 196, 303, 380, 600
BspCNI	CTCAG	3 cut(s)	27, 388, 1318
BspFNI	CGCG	2 cut(s)	63, 68
BspLI	GGNNCC	6 cut(s)	137, 604, 690, 805, 1135, 1764
BspMAI	CTGCAG	1 cut(s)	896
BspPI	GGATC	2 cut(s)	1757, 1770
BspQI	GCTCTTC	1 cut(s)	590
BspT104I	TTCGAA	1 cut(s)	1430
BspT107I	GGYRCC	1 cut(s)	602
BspTNI	GGTCTC	2 cut(s)	348, 617
BsrBI	CCGCTC	1 cut(s)	600
BsrFI	RCCGGY	2 cut(s)	57, 299
BsrI	ACTGG	3 cut(s)	627, 1354, 1648
BssAI	RCCGGY	2 cut(s)	57, 299
BssECI	CCNNGG	4 cut(s)	177, 531, 1099, 1706
BssMI	GATC	8 cut(s)	258, 357, 504, 564, 759, 1447, 1558, 1762
BssNI	GRCGYC	1 cut(s)	603
BssSI	CACGAG	1 cut(s)	392
BssT1I	CCWWGG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	392
Bst2UI	CCWGG	3 cut(s)	1083, 1625, 1707
Bst4CI	ACNGT	2 cut(s)	1053, 1491
Bst6I	CTCTTC	1 cut(s)	590
BstACI	GRCGYC	1 cut(s)	603
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstBAI	YACGTR	1 cut(s)	510
BstBI	TTCGAA	1 cut(s)	1430
BstC8I	GCNNGC	3 cut(s)	59, 196, 1293
BstDEI	CTNAG	6 cut(s)	35, 375, 657, 882, 1305, 1589
BstDSI	CCRYGG	2 cut(s)	177, 1099
BstF5I	GGATG	4 cut(s)	679, 1006, 1051, 1716
BstFNI	CGCG	2 cut(s)	63, 68
BstH2I	RGCGCY	1 cut(s)	606
BstHHI	GCGC	5 cut(s)	63, 297, 439, 605, 665
BstKTI	GATC	8 cut(s)	261, 360, 507, 567, 762, 1450, 1561, 1765
BstMAI	GTCTC	4 cut(s)	348, 466, 617, 876
BstMBI	GATC	8 cut(s)	258, 357, 504, 564, 759, 1447, 1558, 1762
BstMCI	CGRYCG	2 cut(s)	133, 615
BstMWI	GCNNNNNNNGC	7 cut(s)	179, 303, 445, 611, 662, 748, 1301
BstNI	CCWGG	3 cut(s)	1083, 1625, 1707
BstNSI	RCATGY	1 cut(s)	484
BstSCI	CCNGG	3 cut(s)	1081, 1623, 1705
BstSFI	CTRYAG	1 cut(s)	892
BstUI	CGCG	2 cut(s)	63, 68
BstV1I	GCAGC	3 cut(s)	251, 1186, 1365
BstV2I	GAAGAC	1 cut(s)	355
BstX2I	RGATCY	2 cut(s)	1558, 1762
BstYI	RGATCY	2 cut(s)	1558, 1762
BstZI	CGGCCG	1 cut(s)	612
BsuI	GTATCC	3 cut(s)	522, 1229, 1387
BtgI	CCRYGG	2 cut(s)	177, 1099
BtgZI	GCGATG	1 cut(s)	154
BtsCI	GGATG	4 cut(s)	679, 1006, 1051, 1716
BtsI	GCAGTG	2 cut(s)	889, 901
BtsIMutI	CAGTG	4 cut(s)	634, 889, 901, 1641
Cac8I	GCNNGC	3 cut(s)	59, 196, 1293
CaiI	CAGNNNCTG	2 cut(s)	1445, 1706
CfoI	GCGC	5 cut(s)	63, 297, 439, 605, 665
Cfr10I	RCCGGY	2 cut(s)	57, 299
Cfr13I	GGNCC	6 cut(s)	55, 70, 135, 193, 368, 803
CpoI	CGGWCCG	1 cut(s)	368
CseI	GACGC	2 cut(s)	13, 52
Csp6I	GTAC	5 cut(s)	493, 547, 783, 927, 1739
CspI	CGGWCCG	1 cut(s)	368
CviAII	CATG	8 cut(s)	112, 178, 202, 280, 481, 932, 1606, 1697
CviQI	GTAC	5 cut(s)	493, 547, 783, 927, 1739
DdeI	CTNAG	6 cut(s)	35, 375, 657, 882, 1305, 1589
DinI	GGCGCC	1 cut(s)	604
DpnI	GATC	8 cut(s)	260, 359, 506, 566, 761, 1449, 1560, 1764
DpnII	GATC	8 cut(s)	258, 357, 504, 564, 759, 1447, 1558, 1762
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
EaeI	YGGCCR	5 cut(s)	97, 114, 180, 612, 1096
EagI	CGGCCG	1 cut(s)	612
Eam1104I	CTCTTC	1 cut(s)	590
EarI	CTCTTC	1 cut(s)	590
EclXI	CGGCCG	1 cut(s)	612
Eco130I	CCWWGG	1 cut(s)	177
Eco31I	GGTCTC	2 cut(s)	348, 617
Eco47I	GGWCC	2 cut(s)	135, 368
Eco52I	CGGCCG	1 cut(s)	612
Eco57I	CTGAAG	4 cut(s)	569, 965, 1301, 1752
EcoRI	GAATTC	2 cut(s)	698, 1309
EcoRII	CCWGG	3 cut(s)	1081, 1623, 1705
EcoT14I	CCWWGG	1 cut(s)	177
EgeI	GGCGCC	1 cut(s)	604
EheI	GGCGCC	1 cut(s)	604
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	8 cut(s)	115, 181, 205, 283, 484, 935, 1609, 1700
FalI	AAGNNNNNCTT	6 cut(s)	182, 214, 347, 379, 563, 595
FaqI	GGGAC	2 cut(s)	242, 1073
FatI	CATG	8 cut(s)	111, 177, 201, 279, 480, 931, 1605, 1696
FauI	CCCGC	1 cut(s)	203
FauNDI	CATATG	1 cut(s)	1249
FbaI	TGATCA	3 cut(s)	564, 759, 1447
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	9 cut(s)	69, 159, 174, 265, 304, 380, 601, 1200, 1354
FokI	GGATG	4 cut(s)	686, 993, 1058, 1723
Fsp4HI	GCNGC	9 cut(s)	69, 159, 174, 265, 304, 380, 601, 1200, 1354
FspBI	CTAG	2 cut(s)	1077, 1742
GlaI	GCGC	5 cut(s)	62, 296, 438, 604, 664
GluI	GCNGC	9 cut(s)	69, 159, 174, 265, 304, 380, 601, 1200, 1354
GsuI	CTGGAG	1 cut(s)	452
HaeII	RGCGCY	1 cut(s)	606
HapII	CCGG	5 cut(s)	58, 133, 300, 349, 383
HgaI	GACGC	2 cut(s)	13, 52
HhaI	GCGC	5 cut(s)	63, 297, 439, 605, 665
Hin1I	GRCGYC	1 cut(s)	603
Hin1II	CATG	8 cut(s)	115, 181, 205, 283, 484, 935, 1609, 1700
Hin6I	GCGC	5 cut(s)	61, 295, 437, 603, 663
HinP1I	GCGC	5 cut(s)	61, 295, 437, 603, 663
HincII	GTYRAC	6 cut(s)	124, 211, 813, 837, 1183, 1516
HindII	GTYRAC	6 cut(s)	124, 211, 813, 837, 1183, 1516
HindIII	AAGCTT	2 cut(s)	29, 749
HpaII	CCGG	5 cut(s)	58, 133, 300, 349, 383
HphI	GGTGA	7 cut(s)	82, 304, 436, 559, 1052, 1588, 1658
Hpy188III	TCNNGA	4 cut(s)	25, 431, 845, 1727
Hpy99I	CGWCG	5 cut(s)	68, 122, 125, 242, 424
HpyAV	CCTTC	8 cut(s)	103, 664, 940, 1156, 1426, 1595, 1630, 1776
HpyCH4III	ACNGT	2 cut(s)	1053, 1491
HpyCH4IV	ACGT	3 cut(s)	509, 575, 1518
HpyCH4V	TGCA	7 cut(s)	448, 538, 558, 894, 1295, 1462, 1700
HpyF10VI	GCNNNNNNNGC	7 cut(s)	179, 303, 445, 611, 662, 748, 1301
HpyF3I	CTNAG	6 cut(s)	35, 375, 657, 882, 1305, 1589
HpySE526I	ACGT	3 cut(s)	509, 575, 1518
Hsp92I	GRCGYC	1 cut(s)	603
Hsp92II	CATG	8 cut(s)	115, 181, 205, 283, 484, 935, 1609, 1700
HspAI	GCGC	5 cut(s)	61, 295, 437, 603, 663
KasI	GGCGCC	1 cut(s)	602
KroI	GCCGGC	1 cut(s)	57
KroNI	GCCGGC	1 cut(s)	59
Ksp22I	TGATCA	3 cut(s)	564, 759, 1447
Kzo9I	GATC	8 cut(s)	258, 357, 504, 564, 759, 1447, 1558, 1762
LguI	GCTCTTC	1 cut(s)	590
LmnI	GCTCC	3 cut(s)	12, 1103, 1661
Lsp1109I	GCAGC	3 cut(s)	251, 1186, 1365
LweI	GCATC	1 cut(s)	729
MaeI	CTAG	2 cut(s)	1077, 1742
MaeII	ACGT	3 cut(s)	509, 575, 1518
MaeIII	GTNAC	5 cut(s)	320, 1020, 1231, 1639, 1687
MalI	GATC	8 cut(s)	260, 359, 506, 566, 761, 1449, 1560, 1764
MbiI	CCGCTC	1 cut(s)	600
MboI	GATC	8 cut(s)	258, 357, 504, 564, 759, 1447, 1558, 1762
MflI	RGATCY	2 cut(s)	1558, 1762
MhlI	GDGCHC	1 cut(s)	41
MlsI	TGGCCA	1 cut(s)	1098
MluNI	TGGCCA	1 cut(s)	1098
Mly113I	GGCGCC	1 cut(s)	603
MlyI	GAGTC	8 cut(s)	119, 367, 398, 467, 878, 994, 1178, 1451
MmeI	TCCRAC	1 cut(s)	153
Mox20I	TGGCCA	1 cut(s)	1098
MroNI	GCCGGC	1 cut(s)	57
MroXI	GAANNNNTTC	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	1098
MseI	TTAA	6 cut(s)	851, 858, 993, 1380, 1599, 1758
MslI	CAYNNNNRTG	1 cut(s)	894
Msp20I	TGGCCA	1 cut(s)	1098
MspI	CCGG	5 cut(s)	58, 133, 300, 349, 383
MspR9I	CCNGG	3 cut(s)	1083, 1625, 1707
MvaI	CCWGG	3 cut(s)	1083, 1625, 1707
MvnI	CGCG	2 cut(s)	63, 68
MwoI	GCNNNNNNNGC	7 cut(s)	179, 303, 445, 611, 662, 748, 1301
NaeI	GCCGGC	1 cut(s)	59
NarI	GGCGCC	1 cut(s)	603
NcoI	CCATGG	1 cut(s)	177
NdeI	CATATG	1 cut(s)	1249
NdeII	GATC	8 cut(s)	258, 357, 504, 564, 759, 1447, 1558, 1762
NgoMIV	GCCGGC	1 cut(s)	57
NlaIII	CATG	8 cut(s)	115, 181, 205, 283, 484, 935, 1609, 1700
NlaIV	GGNNCC	6 cut(s)	137, 604, 690, 805, 1135, 1764
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	4 cut(s)	320, 1020, 1231, 1639
NspI	RCATGY	1 cut(s)	484
NspV	TTCGAA	1 cut(s)	1430
OliI	CACNNNNGTG	1 cut(s)	894
PciSI	GCTCTTC	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	4 cut(s)	114, 126, 237, 399
PdiI	GCCGGC	1 cut(s)	59
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	5 cut(s)	427, 451, 517, 795, 1253
PkrI	GCNGC	9 cut(s)	70, 160, 175, 266, 305, 381, 602, 1201, 1355
PleI	GAGTC	8 cut(s)	119, 367, 398, 467, 877, 994, 1178, 1450
PluTI	GGCGCC	1 cut(s)	606
PpsI	GAGTC	8 cut(s)	119, 367, 398, 467, 877, 994, 1178, 1450
Ppu21I	YACGTR	1 cut(s)	510
Psp1406I	AACGTT	1 cut(s)	1518
Psp6I	CCWGG	3 cut(s)	1081, 1623, 1705
PspGI	CCWGG	3 cut(s)	1081, 1623, 1705
PspN4I	GGNNCC	6 cut(s)	137, 604, 690, 805, 1135, 1764
PspPI	GGNCC	6 cut(s)	55, 70, 135, 193, 368, 803
PstI	CTGCAG	1 cut(s)	896
PstNI	CAGNNNCTG	2 cut(s)	1445, 1706
PsuI	RGATCY	2 cut(s)	1558, 1762
RsaI	GTAC	5 cut(s)	494, 548, 784, 928, 1740
RsaNI	GTAC	5 cut(s)	493, 547, 783, 927, 1739
RseI	CAYNNNNRTG	1 cut(s)	894
Rsr2I	CGGWCCG	1 cut(s)	368
RsrII	CGGWCCG	1 cut(s)	368
SalI	GTCGAC	1 cut(s)	122
SapI	GCTCTTC	1 cut(s)	590
SaqAI	TTAA	6 cut(s)	851, 858, 993, 1380, 1599, 1758
SatI	GCNGC	9 cut(s)	69, 159, 174, 265, 304, 380, 601, 1200, 1354
Sau3AI	GATC	8 cut(s)	258, 357, 504, 564, 759, 1447, 1558, 1762
Sau96I	GGNCC	6 cut(s)	55, 70, 135, 193, 368, 803
ScaI	AGTACT	2 cut(s)	494, 1740
SchI	GAGTC	8 cut(s)	119, 367, 398, 467, 878, 994, 1178, 1451
ScrFI	CCNGG	3 cut(s)	1083, 1625, 1707
SduI	GDGCHC	1 cut(s)	41
SfaNI	GCATC	1 cut(s)	729
SfcI	CTRYAG	1 cut(s)	892
SfoI	GGCGCC	1 cut(s)	604
SfuI	TTCGAA	1 cut(s)	1430
SgrAI	CRCCGGYG	1 cut(s)	299
SinI	GGWCC	2 cut(s)	135, 368
SmiMI	CAYNNNNRTG	1 cut(s)	894
SmlI	CTYRAG	2 cut(s)	1016, 1676
SmoI	CTYRAG	2 cut(s)	1016, 1676
SsiI	CCGC	9 cut(s)	68, 103, 151, 159, 174, 196, 303, 380, 600
SspDI	GGCGCC	1 cut(s)	602
SspI	AATATT	1 cut(s)	962
SspMI	CTAG	2 cut(s)	1077, 1742
StyD4I	CCNGG	3 cut(s)	1081, 1623, 1705
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	1053, 1491
TaiI	ACGT	3 cut(s)	512, 578, 1521
TaqI	TCGA	6 cut(s)	123, 240, 402, 489, 1344, 1430
TaqII	GACCGA	1 cut(s)	385
TatI	WGTACW	3 cut(s)	492, 926, 1738
TauI	GCSGC	6 cut(s)	71, 161, 176, 306, 382, 603
TfiI	GAWTC	5 cut(s)	427, 451, 517, 795, 1253
Tru1I	TTAA	6 cut(s)	851, 858, 993, 1380, 1599, 1758
Tru9I	TTAA	6 cut(s)	851, 858, 993, 1380, 1599, 1758
TscAI	CASTG	4 cut(s)	634, 896, 901, 1648
TseFI	GTSAC	4 cut(s)	320, 1020, 1231, 1639
TseI	GCWGC	3 cut(s)	264, 1199, 1353
Tsp45I	GTSAC	4 cut(s)	320, 1020, 1231, 1639
TspDTI	ATGAA	9 cut(s)	157, 190, 296, 948, 1062, 1416, 1559, 1685, 1727
TspGWI	ACGGA	3 cut(s)	510, 1116, 1303
TspRI	CASTG	4 cut(s)	634, 896, 901, 1648
VpaK11BI	GGWCC	2 cut(s)	135, 368
XapI	RAATTY	5 cut(s)	698, 822, 1309, 1331, 1722
XceI	RCATGY	1 cut(s)	484
XcmI	CCANNNNNNNNNTGG	3 cut(s)	49, 634, 814
XmiI	GTMKAC	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	335
XspI	CTAG	2 cut(s)	1077, 1742
ZrmI	AGTACT	2 cut(s)	494, 1740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.