Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001898

Physical Location & Seq

Genomic Coordinates Forward (+)

14633286 .. 14633546

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00011600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGCCGAGAGCAAGGCCCGCTTCATGTTCGTCAACACCAACTCCCTGCGGGACGAAATCGCCAAACAAATGACCAAGAAGATCGGCCGCTACTCTCCCTCCATGAACACTCTGCGCGCCGGCGGCTTCCTCACCAATAGTCACGGCCCTAAGAAGTTCGGGTCTAGCCGGAAGAAGATCGTCTTCGGACCGACTCAACCGCGGACGCCTCGTGGTTTTCGACTCCGAGAGGAAGTAGTCGGTGATTCTCGAGGCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

86

Amino Acids

9.62

Weight (kDa)

11.47

Isoelectric Point (pI)

31.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03600
fragaria_vesca	FvH4_7g08140
malus_domestica	MD02G1230600.v1.1
prunus_persica	Prupe.2G107500_v2.0.a1
pyrus_communis	pycom02g19970 pycom07g06540
rosa_chinensis	RchiOBHm_Chr1g0341081 RchiOBHm_Chr1g0363821 RchiOBHm_Chr1g0383121 RchiOBHm_Chr2g0085551 RchiOBHm_Chr3g0481141 RchiOBHm_Chr5g0027611 RchiOBHm_Chr5g0054321 RchiOBHm_Chr6g0246101
rosa_laevigata	RLG00000003952 RLG00000006546 RLG00000013359 RLG00000020654 RLG00000029063
rosa_multiflora	Rmu_sc0000533.1_g000047 Rmu_sc0000821.1_g000002 Rmu_sc0001211.1_g000068 Rmu_sc0002200.1_g000002 Rmu_sc0004332.1_g000001 Rmu_sc0004577.1_g000014 Rmu_sc0008563.1_g000010 Rmu_sc0012351.1_g000004 Rmu_ssc0000190.1_g000008
rosa_roxburghii	Rroxscaffold_1G00011600 Rroxscaffold_4G00311710
rosa_rugosa	Rorug01G0160000.1 Rorug05G0092000
rosa_samantha	Rh1AG174300 Rh1BG142600 Rh1BG221400 Rh1CG162100 Rh1CG365900 Rh1DG174200 Rh1DG248400 Rh1DG383600 Rh3AG240800 Rh5AG444100 Rh5DG194400
rosa_wichuraiana	Rw1G014550 Rw4G015450 Rw5G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	117, 202
AciI	CCGC	6 cut(s)	19, 49, 88, 123, 200, 202
AcoI	YGGCCR	2 cut(s)	3, 85
AcyI	GRCGYC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	249
AoxI	GGCC	4 cut(s)	3, 15, 85, 145
AspLEI	GCGC	3 cut(s)	117, 119, 257
AspS9I	GGNCC	3 cut(s)	16, 146, 188
AsuHPI	GGTGA	2 cut(s)	124, 254
AvaI	CYCGRG	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	188
BauI	CACGAG	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	175
BceAI	ACGGC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	165
BisI	GCNGC	2 cut(s)	88, 124
BlsI	GCNGC	2 cut(s)	89, 125
Bme18I	GGWCC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	249
BmgT120I	GGNCC	3 cut(s)	16, 146, 188
BpiI	GAAGAC	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	200
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 83, 113
Bse118I	RCCGGY	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	200
BsePI	GCGCGC	1 cut(s)	115
BseX3I	CGGCCG	1 cut(s)	85
Bsh1236I	CGCG	2 cut(s)	117, 202
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	4 cut(s)	5, 17, 87, 147
BsiEI	CGRYCG	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	2 cut(s)	120, 169
BslFI	GGGAC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	4 cut(s)	5, 17, 87, 147
BsoBI	CYCGRG	1 cut(s)	249
Bsp143I	GATC	2 cut(s)	81, 177
BspACI	CCGC	6 cut(s)	19, 49, 88, 123, 200, 202
BspANI	GGCC	4 cut(s)	5, 17, 87, 147
BspFNI	CGCG	2 cut(s)	117, 202
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	200
BssHII	GCGCGC	1 cut(s)	115
BssMI	GATC	2 cut(s)	81, 177
BssNI	GRCGYC	1 cut(s)	206
BssSI	CACGAG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	206
BstC8I	GCNNGC	3 cut(s)	19, 117, 121
BstDEI	CTNAG	1 cut(s)	150
BstDSI	CCRYGG	1 cut(s)	200
BstFNI	CGCG	2 cut(s)	117, 202
BstHHI	GCGC	3 cut(s)	117, 119, 257
BstKTI	GATC	2 cut(s)	84, 180
BstMBI	GATC	2 cut(s)	81, 177
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 123
BstUI	CGCG	2 cut(s)	117, 202
BstV2I	GAAGAC	1 cut(s)	175
BstZI	CGGCCG	1 cut(s)	85
BsuRI	GGCC	4 cut(s)	5, 17, 87, 147
BtgI	CCRYGG	1 cut(s)	200
Cac8I	GCNNGC	3 cut(s)	19, 117, 121
CfoI	GCGC	3 cut(s)	117, 119, 257
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	3 cut(s)	16, 146, 188
Cfr42I	CCGCGG	1 cut(s)	203
CpoI	CGGWCCG	1 cut(s)	188
CseI	GACGC	1 cut(s)	214
CspI	CGGWCCG	1 cut(s)	188
CviAII	CATG	2 cut(s)	25, 103
CviJI	RGCY	6 cut(s)	5, 17, 87, 126, 147, 168
CviKI_1	RGCY	6 cut(s)	5, 17, 87, 126, 147, 168
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	2 cut(s)	83, 179
DpnII	GATC	2 cut(s)	81, 177
EaeI	YGGCCR	2 cut(s)	3, 85
EagI	CGGCCG	1 cut(s)	85
EclXI	CGGCCG	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	188
Eco52I	CGGCCG	1 cut(s)	85
Eco88I	CYCGRG	1 cut(s)	249
FaeI	CATG	2 cut(s)	28, 106
FaiI	YATR	3 cut(s)	26, 104, 259
FalI	AAGNNNNNCTT	3 cut(s)	37, 167, 199
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	24, 102
FauI	CCCGC	2 cut(s)	26, 42
Fnu4HI	GCNGC	2 cut(s)	88, 124
Fsp4HI	GCNGC	2 cut(s)	88, 124
FspBI	CTAG	1 cut(s)	165
GlaI	GCGC	3 cut(s)	116, 118, 256
GluI	GCNGC	2 cut(s)	88, 124
HaeIII	GGCC	4 cut(s)	5, 17, 87, 147
HapII	CCGG	2 cut(s)	120, 169
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	3 cut(s)	117, 119, 257
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	2 cut(s)	28, 106
Hin6I	GCGC	3 cut(s)	115, 117, 255
HinP1I	GCGC	3 cut(s)	115, 117, 255
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	3 cut(s)	193, 222, 245
HpaII	CCGG	2 cut(s)	120, 169
HphI	GGTGA	2 cut(s)	124, 254
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	188, 227
Hpy188III	TCNNGA	1 cut(s)	249
Hpy8I	GTNNAC	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 123
HpyF3I	CTNAG	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	2 cut(s)	28, 106
HspAI	GCGC	3 cut(s)	115, 117, 255
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
KspI	CCGCGG	1 cut(s)	203
Kzo9I	GATC	2 cut(s)	81, 177
LpnPI	CCDG	3 cut(s)	59, 133, 182
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	2 cut(s)	83, 179
MboI	GATC	2 cut(s)	81, 177
MboII	GAAGA	4 cut(s)	91, 175, 184, 187
MlyI	GAGTC	2 cut(s)	187, 216
MnlI	CCTC	5 cut(s)	109, 140, 219, 223, 245
MreI	CGCCGGCG	1 cut(s)	119
MroNI	GCCGGC	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	2 cut(s)	120, 169
MvnI	CGCG	2 cut(s)	117, 202
MwoI	GCNNNNNNNGC	2 cut(s)	18, 123
NaeI	GCCGGC	1 cut(s)	121
NdeII	GATC	2 cut(s)	81, 177
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	2 cut(s)	28, 106
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	140
PaeR7I	CTCGAG	1 cut(s)	249
PauI	GCGCGC	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	217
PdiI	GCCGGC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	2 cut(s)	89, 125
PleI	GAGTC	2 cut(s)	187, 216
PpsI	GAGTC	2 cut(s)	187, 216
PspPI	GGNCC	3 cut(s)	16, 146, 188
PteI	GCGCGC	1 cut(s)	115
Rsr2I	CGGWCCG	1 cut(s)	188
RsrII	CGGWCCG	1 cut(s)	188
SacII	CCGCGG	1 cut(s)	203
SatI	GCNGC	2 cut(s)	88, 124
Sau3AI	GATC	2 cut(s)	81, 177
Sau96I	GGNCC	3 cut(s)	16, 146, 188
SchI	GAGTC	2 cut(s)	187, 216
Sfr274I	CTCGAG	1 cut(s)	249
Sfr303I	CCGCGG	1 cut(s)	203
SgrAI	CRCCGGYG	1 cut(s)	119
SgrBI	CCGCGG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	188
SlaI	CTCGAG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
SsiI	CCGC	6 cut(s)	19, 49, 88, 123, 200, 202
SspMI	CTAG	1 cut(s)	165
TaqI	TCGA	2 cut(s)	220, 250
TaqII	GACCGA	1 cut(s)	205
TauI	GCSGC	2 cut(s)	90, 126
TfiI	GAWTC	1 cut(s)	245
TseFI	GTSAC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	13, 119
VpaK11BI	GGWCC	1 cut(s)	188
XhoI	CTCGAG	1 cut(s)	249
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.