RchiOBHm_Chr1g0383121

UTP--glucose-1-phosphate uridylyltransferase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
67610280 .. 67611457
1178 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60606

Sequence Viewer

Length: 861 bp
ATGCCACTCTCTCATCTCTCTCATCCCGATCTCTTTCTCTTCTCTATTCTCTCCTCTTTCTCTCTCTCCAGACCAGTCTCTCTCTCCATATCAACGCCGGCGACCTGCTGCATCTCCTCCCTTCGCCTGAATCTACGTCGCCACCTTCTCCGGCGAGCTGCTTTAGAGCTACAACGACAGAGATGGGCTCGGATTGTAGATCATTGTCGGTGCAGTCTCTCTCGCAGGGCCGCCTTCTCCTCCGGCAAGGAGTACAGATCCAAGGTCGAGGCCGAGCTCTCTGAGGTCTGCTCTAACATCCTGAGGATTCGTCTGATTTTCGTCGCCGCCATGGCCGAGAACAAGGCCCGCTTCATGTTCGTCAACACCAACTCCCTCTGGGACGAAATCGTCGAACAAATGACCAAGAAGATCGGCTGCTACTCTCCCTCCATGAACACTCTCTGGTGCACCGGCGGCTTCCTCACCAATAGTCACAGCCCTAAGAAGTTCAGGTCTCGCAGGAAGAAGATCGTCTTCGGACCGACTCAACCACCGGACTGCCTCGTGGTTTTCGACTCCGAGAGGAAGTCGTCGGTGATTCTCGAGGCGCATAGGTTGCAGATTTCGATTGTTTCGCTTGTGGACTCGGACATGCCTATCGAGTACTACAACAAGATCACGTATCCGATTCCGTGTAATTCCTCGGTGCAATTTGTGTACCTGTTCTGCAATTTGATCACCAAGACGTTCATGCTTCAGCAGAAGAAAAGCGGCGCCTATTCTGCCGAAATTGAGACTAGTAAGCGAGTGGGGGTTATAGAGAAGGCTAAGAGCGCACAGAAGGATGAGGTGCTTATGGTTCAATCAATTAAAGGATGA

Protein Analysis

286

Amino Acids

32.54

Weight (kDa)

9.69

Isoelectric Point (pI)

59.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S2 PF00318 177 - 243 1.6e-09 Ribosomal protein S2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 389
Acc36I ACCTGC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 755
AciI CCGC 5 cut(s) 231, 327, 349, 456, 753
AclWI GGATC 1 cut(s) 252
AcoI YGGCCR 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 722
AcyI GRCGYC 1 cut(s) 756
AfaI GTAC 3 cut(s) 254, 647, 701
AgsI TTSAA 1 cut(s) 845
AhlI ACTAGT 1 cut(s) 779
AluBI AGCT 3 cut(s) 158, 169, 277
AluI AGCT 3 cut(s) 158, 169, 277
Alw21I GWGCWC 2 cut(s) 279, 452
Alw26I GTCTC 4 cut(s) 82, 221, 501, 770
Alw44I GTGCAC 1 cut(s) 448
AlwI GGATC 1 cut(s) 252
Ama87I CYCGRG 1 cut(s) 584
AoxI GGCC 4 cut(s) 228, 270, 333, 345
ApaLI GTGCAC 1 cut(s) 448
ApeKI GCWGC 3 cut(s) 108, 158, 417
AspLEI GCGC 3 cut(s) 592, 758, 818
AspS9I GGNCC 3 cut(s) 228, 346, 521
AsuHPI GGTGA 3 cut(s) 457, 589, 712
AvaI CYCGRG 1 cut(s) 584
AvaII GGWCC 1 cut(s) 521
AxyI CCTNAGG 1 cut(s) 302
BaeGI GKGCMC 1 cut(s) 452
BanI GGYRCC 1 cut(s) 755
BanII GRGCYC 2 cut(s) 190, 279
BauI CACGAG 1 cut(s) 545
BbsI GAAGAC 1 cut(s) 508
Bbv12I GWGCWC 2 cut(s) 279, 452
BbvI GCAGC 3 cut(s) 95, 145, 404
BccI CCATC 1 cut(s) 177
BciVI GTATCC 1 cut(s) 675
BclI TGATCA 1 cut(s) 717
BcoDI GTCTC 4 cut(s) 82, 221, 501, 770
BcuI ACTAGT 1 cut(s) 779
BfaI CTAG 1 cut(s) 780
BfoI RGCGCY 1 cut(s) 759
BfuAI ACCTGC 1 cut(s) 113
BfuI GTATCC 1 cut(s) 675
BglI GCCNNNNNGGC 1 cut(s) 332
BisI GCNGC 7 cut(s) 109, 159, 231, 327, 418, 457, 754
BlsI GCNGC 7 cut(s) 110, 160, 232, 328, 419, 458, 755
BmcAI AGTACT 1 cut(s) 647
Bme18I GGWCC 1 cut(s) 521
BmeT110I CYCGRG 1 cut(s) 584
BmgT120I GGNCC 3 cut(s) 228, 346, 521
BmiI GGNNCC 1 cut(s) 757
BmsI GCATC 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 508
BplI GAGNNNNNCTC 4 cut(s) 172, 204, 275, 307
BpmI CTGGAG 1 cut(s) 52
BsaAI YACGTR 1 cut(s) 663
BsaHI GRCGYC 1 cut(s) 756
BsaI GGTCTC 1 cut(s) 501
BsaJI CCNNGG 3 cut(s) 261, 330, 684
BsaWI WCCGGW 1 cut(s) 535
BsaXI ACNNNNNCTCC 4 cut(s) 356, 386, 413, 443
Bse118I RCCGGY 2 cut(s) 97, 452
Bse1I ACTGG 1 cut(s) 74
Bse21I CCTNAGG 1 cut(s) 302
BseDI CCNNGG 3 cut(s) 261, 330, 684
BseGI GGATG 3 cut(s) 22, 297, 832
BseMII CTCAG 2 cut(s) 273, 293
BseNI ACTGG 1 cut(s) 74
BseRI GAGGAG 3 cut(s) 43, 106, 229
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 3 cut(s) 95, 145, 404
BsgI GTGCAG 1 cut(s) 232
BshFI GGCC 4 cut(s) 230, 272, 335, 347
BshNI GGYRCC 1 cut(s) 755
BsiHKAI GWGCWC 2 cut(s) 279, 452
BsiHKCI CYCGRG 1 cut(s) 584
BsiSI CCGG 5 cut(s) 98, 151, 243, 453, 536
BslFI GGGAC 1 cut(s) 395
BsmAI GTCTC 4 cut(s) 82, 221, 501, 770
BsmFI GGGAC 1 cut(s) 395
BsnI GGCC 4 cut(s) 230, 272, 335, 347
Bso31I GGTCTC 1 cut(s) 501
BsoBI CYCGRG 1 cut(s) 584
Bsp1286I GDGCHC 3 cut(s) 190, 279, 452
Bsp143I GATC 7 cut(s) 28, 199, 257, 411, 510, 657, 717
Bsp19I CCATGG 1 cut(s) 330
BspACI CCGC 5 cut(s) 231, 327, 349, 456, 753
BspANI GGCC 4 cut(s) 230, 272, 335, 347
BspCNI CTCAG 2 cut(s) 274, 294
BspLI GGNNCC 1 cut(s) 757
BspMI ACCTGC 1 cut(s) 113
BspPI GGATC 1 cut(s) 252
BspT107I GGYRCC 1 cut(s) 755
BspTNI GGTCTC 1 cut(s) 501
BsrFI RCCGGY 2 cut(s) 97, 452
BsrI ACTGG 1 cut(s) 74
BssAI RCCGGY 2 cut(s) 97, 452
BssECI CCNNGG 3 cut(s) 261, 330, 684
BssMI GATC 7 cut(s) 28, 199, 257, 411, 510, 657, 717
BssNI GRCGYC 1 cut(s) 756
BssSI CACGAG 1 cut(s) 545
BssT1I CCWWGG 2 cut(s) 261, 330
Bst2BI CACGAG 1 cut(s) 545
Bst6I CTCTTC 1 cut(s) 44
BstACI GRCGYC 1 cut(s) 756
BstAPI GCANNNNNTGC 1 cut(s) 598
BstBAI YACGTR 1 cut(s) 663
BstC8I GCNNGC 3 cut(s) 99, 156, 349
BstDEI CTNAG 4 cut(s) 282, 302, 483, 810
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 3 cut(s) 22, 297, 832
BstH2I RGCGCY 1 cut(s) 759
BstHHI GCGC 3 cut(s) 592, 758, 818
BstKTI GATC 7 cut(s) 31, 202, 260, 414, 513, 660, 720
BstMAI GTCTC 4 cut(s) 82, 221, 501, 770
BstMBI GATC 7 cut(s) 28, 199, 257, 411, 510, 657, 717
BstMWI GCNNNNNNNGC 5 cut(s) 332, 456, 598, 764, 815
BstNSI RCATGY 1 cut(s) 637
BstSLI GKGCMC 1 cut(s) 452
BstV1I GCAGC 3 cut(s) 95, 145, 404
BstV2I GAAGAC 1 cut(s) 508
BstX2I RGATCY 1 cut(s) 257
BstYI RGATCY 1 cut(s) 257
Bsu36I CCTNAGG 1 cut(s) 302
BsuI GTATCC 1 cut(s) 675
BsuRI GGCC 4 cut(s) 230, 272, 335, 347
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 3 cut(s) 22, 297, 832
BveI ACCTGC 1 cut(s) 113
Cac8I GCNNGC 3 cut(s) 99, 156, 349
CfoI GCGC 3 cut(s) 592, 758, 818
Cfr10I RCCGGY 2 cut(s) 97, 452
Cfr13I GGNCC 3 cut(s) 228, 346, 521
CpoI CGGWCCG 1 cut(s) 521
Csp6I GTAC 3 cut(s) 253, 646, 700
CspI CGGWCCG 1 cut(s) 521
CviAII CATG 5 cut(s) 331, 355, 433, 634, 733
CviQI GTAC 3 cut(s) 253, 646, 700
DdeI CTNAG 4 cut(s) 282, 302, 483, 810
DinI GGCGCC 1 cut(s) 757
DpnI GATC 7 cut(s) 30, 201, 259, 413, 512, 659, 719
DpnII GATC 7 cut(s) 28, 199, 257, 411, 510, 657, 717
DrdI GACNNNNNNGTC 1 cut(s) 389
DseDI GACNNNNNNGTC 1 cut(s) 389
EaeI YGGCCR 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Ecl136II GAGCTC 1 cut(s) 277
Eco130I CCWWGG 2 cut(s) 261, 330
Eco24I GRGCYC 2 cut(s) 190, 279
Eco31I GGTCTC 1 cut(s) 501
Eco47I GGWCC 1 cut(s) 521
Eco53kI GAGCTC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 722
Eco81I CCTNAGG 1 cut(s) 302
Eco88I CYCGRG 1 cut(s) 584
EcoICRI GAGCTC 1 cut(s) 277
EcoT14I CCWWGG 2 cut(s) 261, 330
EcoT38I GRGCYC 2 cut(s) 190, 279
EgeI GGCGCC 1 cut(s) 757
EheI GGCGCC 1 cut(s) 757
ErhI CCWWGG 2 cut(s) 261, 330
FaeI CATG 5 cut(s) 334, 358, 436, 637, 736
FaiI YATR 9 cut(s) 89, 332, 356, 434, 594, 635, 734, 800, 839
FalI AAGNNNNNCTT 4 cut(s) 335, 367, 500, 532
FaqI GGGAC 1 cut(s) 395
FatI CATG 5 cut(s) 330, 354, 432, 633, 732
FauI CCCGC 1 cut(s) 356
FbaI TGATCA 1 cut(s) 717
Fnu4HI GCNGC 7 cut(s) 109, 159, 231, 327, 418, 457, 754
FokI GGATG 3 cut(s) 9, 284, 839
FriOI GRGCYC 2 cut(s) 190, 279
Fsp4HI GCNGC 7 cut(s) 109, 159, 231, 327, 418, 457, 754
FspBI CTAG 1 cut(s) 780
GlaI GCGC 3 cut(s) 591, 757, 817
GluI GCNGC 7 cut(s) 109, 159, 231, 327, 418, 457, 754
GsuI CTGGAG 1 cut(s) 52
HaeII RGCGCY 1 cut(s) 759
HaeIII GGCC 4 cut(s) 230, 272, 335, 347
HapII CCGG 5 cut(s) 98, 151, 243, 453, 536
HhaI GCGC 3 cut(s) 592, 758, 818
Hin1I GRCGYC 1 cut(s) 756
Hin1II CATG 5 cut(s) 334, 358, 436, 637, 736
Hin6I GCGC 3 cut(s) 590, 756, 816
HinP1I GCGC 3 cut(s) 590, 756, 816
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 7 cut(s) 130, 307, 526, 557, 580, 626, 670
HpaII CCGG 5 cut(s) 98, 151, 243, 453, 536
HphI GGTGA 3 cut(s) 457, 589, 712
Hpy166II GTNNAC 4 cut(s) 364, 450, 625, 700
Hpy188I TCNGA 7 cut(s) 192, 283, 315, 521, 562, 631, 669
Hpy188III TCNNGA 4 cut(s) 26, 69, 301, 584
Hpy8I GTNNAC 4 cut(s) 364, 450, 625, 700
Hpy99I CGWCG 4 cut(s) 141, 326, 395, 577
HpyAV CCTTC 5 cut(s) 131, 155, 244, 799, 817
HpyCH4IV ACGT 3 cut(s) 136, 662, 728
HpyCH4V TGCA 6 cut(s) 111, 213, 450, 601, 691, 711
HpyF10VI GCNNNNNNNGC 5 cut(s) 332, 456, 598, 764, 815
HpyF3I CTNAG 4 cut(s) 282, 302, 483, 810
HpySE526I ACGT 3 cut(s) 136, 662, 728
Hsp92I GRCGYC 1 cut(s) 756
Hsp92II CATG 5 cut(s) 334, 358, 436, 637, 736
HspAI GCGC 3 cut(s) 590, 756, 816
KasI GGCGCC 1 cut(s) 755
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
Ksp22I TGATCA 1 cut(s) 717
Kzo9I GATC 7 cut(s) 28, 199, 257, 411, 510, 657, 717
Lsp1109I GCAGC 3 cut(s) 95, 145, 404
LweI GCATC 1 cut(s) 120
MaeI CTAG 1 cut(s) 780
MaeII ACGT 3 cut(s) 136, 662, 728
MaeIII GTNAC 1 cut(s) 473
MalI GATC 7 cut(s) 30, 201, 259, 413, 512, 659, 719
MboI GATC 7 cut(s) 28, 199, 257, 411, 510, 657, 717
MboII GAAGA 6 cut(s) 31, 421, 508, 517, 520, 757
MflI RGATCY 1 cut(s) 257
MhlI GDGCHC 3 cut(s) 190, 279, 452
MluCI AATT 5 cut(s) 679, 692, 712, 771, 849
Mly113I GGCGCC 1 cut(s) 756
MlyI GAGTC 3 cut(s) 520, 551, 620
MreI CGCCGGCG 1 cut(s) 97
MroNI GCCGGC 1 cut(s) 97
MseI TTAA 1 cut(s) 852
MspI CCGG 5 cut(s) 98, 151, 243, 453, 536
MwoI GCNNNNNNNGC 5 cut(s) 332, 456, 598, 764, 815
NaeI GCCGGC 1 cut(s) 99
NarI GGCGCC 1 cut(s) 756
NcoI CCATGG 1 cut(s) 330
NdeII GATC 7 cut(s) 28, 199, 257, 411, 510, 657, 717
NgoMIV GCCGGC 1 cut(s) 97
NlaIII CATG 5 cut(s) 334, 358, 436, 637, 736
NlaIV GGNNCC 1 cut(s) 757
NmeAIII GCCGAG 2 cut(s) 298, 361
NmuCI GTSAC 1 cut(s) 473
NspI RCATGY 1 cut(s) 637
PaeR7I CTCGAG 1 cut(s) 584
PcsI WCGNNNNNNNCGW 2 cut(s) 390, 552
PdiI GCCGGC 1 cut(s) 99
PfeI GAWTC 4 cut(s) 130, 307, 580, 670
PkrI GCNGC 7 cut(s) 110, 160, 232, 328, 419, 458, 755
PleI GAGTC 3 cut(s) 520, 551, 620
PluTI GGCGCC 1 cut(s) 759
PpsI GAGTC 3 cut(s) 520, 551, 620
Ppu21I YACGTR 1 cut(s) 663
Psp124BI GAGCTC 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 757
PspPI GGNCC 3 cut(s) 228, 346, 521
PsuI RGATCY 1 cut(s) 257
RsaI GTAC 3 cut(s) 254, 647, 701
RsaNI GTAC 3 cut(s) 253, 646, 700
Rsr2I CGGWCCG 1 cut(s) 521
RsrII CGGWCCG 1 cut(s) 521
SacI GAGCTC 1 cut(s) 279
SaqAI TTAA 1 cut(s) 852
SatI GCNGC 7 cut(s) 109, 159, 231, 327, 418, 457, 754
Sau3AI GATC 7 cut(s) 28, 199, 257, 411, 510, 657, 717
Sau96I GGNCC 3 cut(s) 228, 346, 521
ScaI AGTACT 1 cut(s) 647
SchI GAGTC 3 cut(s) 520, 551, 620
SduI GDGCHC 3 cut(s) 190, 279, 452
SfaNI GCATC 1 cut(s) 120
SfoI GGCGCC 1 cut(s) 757
Sfr274I CTCGAG 1 cut(s) 584
SgrAI CRCCGGYG 2 cut(s) 97, 452
SinI GGWCC 1 cut(s) 521
SlaI CTCGAG 1 cut(s) 584
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
SpeI ACTAGT 1 cut(s) 779
Sse9I AATT 5 cut(s) 679, 692, 712, 771, 849
SsiI CCGC 5 cut(s) 231, 327, 349, 456, 753
SspDI GGCGCC 1 cut(s) 755
SspMI CTAG 1 cut(s) 780
SstI GAGCTC 1 cut(s) 279
StyI CCWWGG 2 cut(s) 261, 330
TaiI ACGT 3 cut(s) 139, 665, 731
TaqI TCGA 6 cut(s) 267, 393, 555, 585, 608, 642
TaqII GACCGA 1 cut(s) 538
TasI AATT 5 cut(s) 679, 692, 712, 771, 849
TatI WGTACW 2 cut(s) 252, 645
TauI GCSGC 4 cut(s) 233, 329, 459, 756
TfiI GAWTC 4 cut(s) 130, 307, 580, 670
Tru1I TTAA 1 cut(s) 852
Tru9I TTAA 1 cut(s) 852
TseFI GTSAC 1 cut(s) 473
TseI GCWGC 3 cut(s) 108, 158, 417
Tsp45I GTSAC 1 cut(s) 473
TspDTI ATGAA 3 cut(s) 343, 449, 721
TspGWI ACGGA 1 cut(s) 663
VneI GTGCAC 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 521
XceI RCATGY 1 cut(s) 637
XhoI CTCGAG 1 cut(s) 584
XspI CTAG 1 cut(s) 780
ZrmI AGTACT 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.