Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001898

Physical Location & Seq

Genomic Coordinates Reverse (-)

32166892 .. 32173241

Gene Structure 6350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029063

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1881 bp

ATGACGCTCCACTCCATAGTAATCCAGAAGCTGCTGAGCACCAACGCCCATTTGGGCCGCCGCGTCGCGGCCCACCACTTCAAGCAGTTCACCTTCGGCCACCGCAACGGCATGGCCGTCATCGACTCCGACCGGACCCTCATCTGCCTCCGCAACGCCGCCCAGTTCATCGCCGCCATGGCCGAGAACAAGGCCCGCTTCATGTTCGTCAACACCAACTCCCTCTGGGACGAAATCGTCGAACAAATGACCAAGAAGATCGGCTGCTACTCTCCCTCCATGAACATTCTCTGGCGCACTGGCGGCTTCCTCACCAACAGCCACAGCCCGAAGAAGTTCAGGTCTCGCCGGAAGAAGATCGTCTTCGGACCGACTCAGCCGCCGGACTGCCTCGTGGTTTTCGACTCCGAGAGGAAGTCGTCGGTGATTCTCGAGGCGCATAGGTTGCAGATTCCGATTGTCTCGCTTGTGGACTCGGACATGCCTATTGAGTACTACAACAAGATCACGTATCCGATTCCGTGTAATTCCTCGGTGCAATTTGTGTACCTGTTCTGCAATTTGATCACCAAGACGTTCTTGCTTCAGCAGAAGAAGAGCGGCGCCGGTTCGGCCGAAATTGAGACTAGTGAGCGAGTGGGGGTTATAGAGGAGGCTAAGAGCGCAAAGAAGGATGAGTTGCTTGTGGTTCCTTACGAATTCTTACACATTTCTACTGATGTTGAGAAAATTGAGGAGATGCTGGACAAGCTTGTTGTGATCAAGTTCAATGGAGGTTTGGGTACAAGTATGGGATTCGGTGGCCCCAAGTCAACGATGGAAATTTTTGACGGGTTGACATCTCTTGATGTAATTGTTAATCAAATTGAGTCTCTCAATTCTAAGTATCACTGCAGTGTTCCTTTGGTCCTTGTGAACACAGATAGTACACATGAAGATACGCTGAAGGTCTTGGAGAAATATTCCAATTCGGACATTGATATTCAGTCTATTAAACAGACCCAACATCCACAGAGCAAGTCACAGGGAGGACAGAGTTGTGAGGATGAATTGTATCCCTCTGGCCATGGAGCAGTATTGCTTTCGCTTGTGAAAAATGGAACTCTTGATGTCCTATTATCAAAGGGGAAGGAGTATGTCCTTGTGGTTGACTCAGATAATGTGGCTGCTAAAATTGACCCAAAAATTTTAGACCATCTGGTTGAAAACAAGATAGACTACTGTATGGAGGTCACACCTACTTCCTCATATGATTCAGATTTGATAGGTTCACGCCTACAGAAGTTTGAGCTTGCAGAAATAGCTCAGAATTCTGTCAAAGATTCGACGGAGAAATTCAAACTTGTTGATACTGGCAGCTTGTGGTTGAATGTTAGAGCCATTAAAAGGCTTTTGGATACAGATGAACTAAGGATTGAAGATTTCTCTGTTTCGAAGGAAACAGAGTCTGATCAAGTTCTTCTGCAAGAAACAGCAGTTGGTTCAGCAATACGGTTCTTCAATCATGCTATTGGTGTCAACGTTCCTAATTCTCAATTTCTTTCAATGAAAAAAACATCAGATCTACTTCTGTTAAAGTCAAATCTCTATATGTATGATGAAGGGGTTGTAGTTCGGAATATAGCTAGAACCAACCCGGCAAATCCTGTGATCGAATTAGGGCCTGAATTTGAAAAGGTGAGTGATCTTCTAAGTCGCTTTAAGTCCATGCCCGACATTATTGACCTGGACAGCTTGAAGGTCACTGGTGATGTTTGGTTTGGAGCTGGTATAACTCTCAAGGGGAGAGTAACGATTCATGCAAAACCTGGGATGAAATTGGAAATTCCCGATGGAGTAGTAATAGAGAATGAGGACATTAAGGACCCTTCAGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

627

Amino Acids

69.85

Weight (kDa)

5.76

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	11 - 111	3e-14	Ribosomal protein S2
Ribosomal_S2	PF00318	126 - 192	7.3e-10	Ribosomal protein S2
UDPGP	PF01704	218 - 594	1.8e-106	UTP--glucose-1-phosphate uridylyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03600
fragaria_vesca	FvH4_7g08140
malus_domestica	MD02G1230600.v1.1
prunus_persica	Prupe.2G107500_v2.0.a1
pyrus_communis	pycom02g19970 pycom07g06540
rosa_chinensis	RchiOBHm_Chr1g0341081 RchiOBHm_Chr1g0363821 RchiOBHm_Chr1g0383121 RchiOBHm_Chr2g0085551 RchiOBHm_Chr3g0481141 RchiOBHm_Chr5g0027611 RchiOBHm_Chr5g0054321 RchiOBHm_Chr6g0246101
rosa_laevigata	RLG00000003952 RLG00000006546 RLG00000013359 RLG00000020654 RLG00000029063
rosa_multiflora	Rmu_sc0000533.1_g000047 Rmu_sc0000821.1_g000002 Rmu_sc0001211.1_g000068 Rmu_sc0002200.1_g000002 Rmu_sc0004332.1_g000001 Rmu_sc0004577.1_g000014 Rmu_sc0008563.1_g000010 Rmu_sc0012351.1_g000004 Rmu_ssc0000190.1_g000008
rosa_roxburghii	Rroxscaffold_1G00011600 Rroxscaffold_4G00311710
rosa_rugosa	Rorug01G0160000.1 Rorug05G0092000
rosa_samantha	Rh1AG174300 Rh1BG142600 Rh1BG221400 Rh1CG162100 Rh1CG365900 Rh1DG174200 Rh1DG248400 Rh1DG383600 Rh3AG240800 Rh5AG444100 Rh5DG194400
rosa_wichuraiana	Rw1G014550 Rw4G015450 Rw5G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	602
AccBSI	CCGCTC	1 cut(s)	600
AccII	CGCG	2 cut(s)	63, 68
AclI	AACGTT	1 cut(s)	1521
AcoI	YGGCCR	5 cut(s)	97, 114, 180, 612, 1063
AcsI	RAATTY	7 cut(s)	698, 822, 1185, 1309, 1334, 1667, 1824
AcuI	CTGAAG	3 cut(s)	569, 965, 1854
AcyI	GRCGYC	1 cut(s)	603
AfaI	GTAC	4 cut(s)	494, 548, 784, 928
AfiI	CCNNNNNNNGG	2 cut(s)	67, 1386
AhlI	ACTAGT	1 cut(s)	626
AjnI	CCWGG	2 cut(s)	1725, 1807
AjuI	GAANNNNNNNTTGG	2 cut(s)	1461, 1493
AleI	CACNNNNGTG	1 cut(s)	894
AluBI	AGCT	8 cut(s)	31, 751, 1291, 1304, 1359, 1625, 1734, 1766
AluI	AGCT	8 cut(s)	31, 751, 1291, 1304, 1359, 1625, 1734, 1766
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	4 cut(s)	348, 466, 617, 876
AlwNI	CAGNNNCTG	2 cut(s)	31, 1448
Ama87I	CYCGRG	1 cut(s)	431
ApeKI	GCWGC	4 cut(s)	31, 264, 1166, 1356
ApoI	RAATTY	7 cut(s)	698, 822, 1185, 1309, 1334, 1667, 1824
Asp700I	GAANNNNTTC	1 cut(s)	335
AspLEI	GCGC	4 cut(s)	297, 439, 605, 665
AspS9I	GGNCC	9 cut(s)	55, 70, 135, 193, 368, 803, 907, 1661, 1864
AsuC2I	CCSGG	1 cut(s)	1637
AsuHPI	GGTGA	6 cut(s)	82, 304, 436, 559, 1690, 1760
AsuII	TTCGAA	1 cut(s)	1433
AvaI	CYCGRG	1 cut(s)	431
AvaII	GGWCC	4 cut(s)	135, 368, 907, 1864
BalI	TGGCCA	1 cut(s)	1065
BanI	GGYRCC	1 cut(s)	602
BauI	CACGAG	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	4 cut(s)	18, 251, 1153, 1368
BccI	CCATC	3 cut(s)	811, 1203, 1826
BceAI	ACGGC	2 cut(s)	101, 124
BciT130I	CCWGG	2 cut(s)	1727, 1809
BciVI	GTATCC	3 cut(s)	522, 1065, 1390
BclI	TGATCA	3 cut(s)	564, 759, 1450
BcnI	CCSGG	1 cut(s)	1637
BcoDI	GTCTC	4 cut(s)	348, 466, 617, 876
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	2 cut(s)	627, 1626
BfmI	CTRYAG	2 cut(s)	892, 1277
BfoI	RGCGCY	1 cut(s)	606
BfuI	GTATCC	3 cut(s)	522, 1065, 1390
BglI	GCCNNNNNGGC	2 cut(s)	179, 611
BglII	AGATCT	1 cut(s)	1561
BlpI	GCTNAGC	1 cut(s)	35
BmcAI	AGTACT	1 cut(s)	494
Bme1390I	CCNGG	3 cut(s)	1637, 1727, 1809
Bme18I	GGWCC	4 cut(s)	135, 368, 907, 1864
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	9 cut(s)	55, 70, 135, 193, 368, 803, 907, 1661, 1864
BmiI	GGNNCC	5 cut(s)	137, 604, 690, 805, 1866
BmrFI	CCNGG	3 cut(s)	1637, 1727, 1809
BmrI	ACTGGG	1 cut(s)	157
BmsI	GCATC	1 cut(s)	729
BmuI	ACTGGG	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	355
Bpu1102I	GCTNAGC	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	1433
BpuEI	CTTGAG	1 cut(s)	1763
BpuMI	CCSGG	1 cut(s)	1637
BsaAI	YACGTR	1 cut(s)	510
BsaHI	GRCGYC	1 cut(s)	603
BsaI	GGTCTC	1 cut(s)	348
BsaJI	CCNNGG	4 cut(s)	177, 531, 1066, 1808
BsaWI	WCCGGW	1 cut(s)	132
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 1386
Bse118I	RCCGGY	1 cut(s)	605
Bse1I	ACTGG	4 cut(s)	163, 304, 1357, 1750
BseBI	CCWGG	2 cut(s)	1727, 1809
BseDI	CCNNGG	4 cut(s)	177, 531, 1066, 1808
BseGI	GGATG	4 cut(s)	679, 1006, 1051, 1818
BseLI	CCNNNNNNNGG	2 cut(s)	67, 1386
BseMII	CTCAG	4 cut(s)	26, 389, 1167, 1319
BseNI	ACTGG	4 cut(s)	163, 304, 1357, 1750
BseRI	GAGGAG	2 cut(s)	665, 749
BseX3I	CGGCCG	1 cut(s)	612
BseXI	GCAGC	4 cut(s)	18, 251, 1153, 1368
Bsh1236I	CGCG	2 cut(s)	63, 68
Bsh1285I	CGRYCG	2 cut(s)	133, 615
BshNI	GGYRCC	1 cut(s)	602
BsiEI	CGRYCG	2 cut(s)	133, 615
BsiHKAI	GWGCWC	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	5 cut(s)	133, 349, 383, 606, 1637
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	67, 1386
BsmAI	GTCTC	4 cut(s)	348, 466, 617, 876
BsmFI	GGGAC	1 cut(s)	242
Bso31I	GGTCTC	1 cut(s)	348
BsoBI	CYCGRG	1 cut(s)	431
Bsp119I	TTCGAA	1 cut(s)	1433
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	9 cut(s)	258, 357, 504, 564, 759, 1450, 1561, 1650, 1684
Bsp1720I	GCTNAGC	1 cut(s)	35
Bsp19I	CCATGG	2 cut(s)	177, 1066
BspCNI	CTCAG	4 cut(s)	27, 388, 1166, 1318
BspFNI	CGCG	2 cut(s)	63, 68
BspLI	GGNNCC	5 cut(s)	137, 604, 690, 805, 1866
BspMAI	CTGCAG	1 cut(s)	896
BspQI	GCTCTTC	1 cut(s)	590
BspT104I	TTCGAA	1 cut(s)	1433
BspT107I	GGYRCC	1 cut(s)	602
BspTNI	GGTCTC	1 cut(s)	348
BsrBI	CCGCTC	1 cut(s)	600
BsrFI	RCCGGY	1 cut(s)	605
BsrI	ACTGG	4 cut(s)	163, 304, 1357, 1750
BssAI	RCCGGY	1 cut(s)	605
BssECI	CCNNGG	4 cut(s)	177, 531, 1066, 1808
BssMI	GATC	9 cut(s)	258, 357, 504, 564, 759, 1450, 1561, 1650, 1684
BssNI	GRCGYC	1 cut(s)	603
BssSI	CACGAG	1 cut(s)	392
BssT1I	CCWWGG	2 cut(s)	177, 1066
Bst2BI	CACGAG	1 cut(s)	392
Bst2UI	CCWGG	2 cut(s)	1727, 1809
Bst4CI	ACNGT	2 cut(s)	1223, 1494
Bst6I	CTCTTC	1 cut(s)	590
BstACI	GRCGYC	1 cut(s)	603
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstBAI	YACGTR	1 cut(s)	510
BstBI	TTCGAA	1 cut(s)	1433
BstC8I	GCNNGC	2 cut(s)	196, 1293
BstDEI	CTNAG	8 cut(s)	35, 375, 657, 882, 1153, 1305, 1409, 1691
BstDSI	CCRYGG	2 cut(s)	177, 1066
BstF5I	GGATG	4 cut(s)	679, 1006, 1051, 1818
BstFNI	CGCG	2 cut(s)	63, 68
BstH2I	RGCGCY	1 cut(s)	606
BstHHI	GCGC	4 cut(s)	297, 439, 605, 665
BstKTI	GATC	9 cut(s)	261, 360, 507, 567, 762, 1453, 1564, 1653, 1687
BstMAI	GTCTC	4 cut(s)	348, 466, 617, 876
BstMBI	GATC	9 cut(s)	258, 357, 504, 564, 759, 1450, 1561, 1650, 1684
BstMCI	CGRYCG	2 cut(s)	133, 615
BstMWI	GCNNNNNNNGC	7 cut(s)	179, 303, 445, 611, 662, 748, 1301
BstNI	CCWGG	2 cut(s)	1727, 1809
BstNSI	RCATGY	1 cut(s)	484
BstSCI	CCNGG	3 cut(s)	1635, 1725, 1807
BstSFI	CTRYAG	2 cut(s)	892, 1277
BstUI	CGCG	2 cut(s)	63, 68
BstV1I	GCAGC	4 cut(s)	18, 251, 1153, 1368
BstV2I	GAAGAC	1 cut(s)	355
BstX2I	RGATCY	1 cut(s)	1561
BstYI	RGATCY	1 cut(s)	1561
BstZI	CGGCCG	1 cut(s)	612
BsuI	GTATCC	3 cut(s)	522, 1065, 1390
BtgI	CCRYGG	2 cut(s)	177, 1066
BtgZI	GCGATG	1 cut(s)	154
BtsCI	GGATG	4 cut(s)	679, 1006, 1051, 1818
BtsI	GCAGTG	2 cut(s)	889, 901
BtsIMutI	CAGTG	4 cut(s)	297, 889, 901, 1743
Cac8I	GCNNGC	2 cut(s)	196, 1293
CaiI	CAGNNNCTG	2 cut(s)	31, 1448
CfoI	GCGC	4 cut(s)	297, 439, 605, 665
Cfr10I	RCCGGY	1 cut(s)	605
Cfr13I	GGNCC	9 cut(s)	55, 70, 135, 193, 368, 803, 907, 1661, 1864
CpoI	CGGWCCG	1 cut(s)	368
CseI	GACGC	2 cut(s)	13, 52
Csp6I	GTAC	4 cut(s)	493, 547, 783, 927
CspI	CGGWCCG	1 cut(s)	368
CviQI	GTAC	4 cut(s)	493, 547, 783, 927
DdeI	CTNAG	8 cut(s)	35, 375, 657, 882, 1153, 1305, 1409, 1691
DinI	GGCGCC	1 cut(s)	604
DpnI	GATC	9 cut(s)	260, 359, 506, 566, 761, 1452, 1563, 1652, 1686
DpnII	GATC	9 cut(s)	258, 357, 504, 564, 759, 1450, 1561, 1650, 1684
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
EaeI	YGGCCR	5 cut(s)	97, 114, 180, 612, 1063
EagI	CGGCCG	1 cut(s)	612
Eam1104I	CTCTTC	1 cut(s)	590
EarI	CTCTTC	1 cut(s)	590
EclXI	CGGCCG	1 cut(s)	612
Eco130I	CCWWGG	2 cut(s)	177, 1066
Eco31I	GGTCTC	1 cut(s)	348
Eco47I	GGWCC	4 cut(s)	135, 368, 907, 1864
Eco52I	CGGCCG	1 cut(s)	612
Eco57I	CTGAAG	3 cut(s)	569, 965, 1854
Eco88I	CYCGRG	1 cut(s)	431
EcoO109I	RGGNCCY	2 cut(s)	1661, 1864
EcoRI	GAATTC	2 cut(s)	698, 1309
EcoRII	CCWGG	2 cut(s)	1725, 1807
EcoT14I	CCWWGG	2 cut(s)	177, 1066
EgeI	GGCGCC	1 cut(s)	604
EheI	GGCGCC	1 cut(s)	604
ErhI	CCWWGG	2 cut(s)	177, 1066
FalI	AAGNNNNNCTT	6 cut(s)	182, 214, 347, 379, 563, 595
FaqI	GGGAC	1 cut(s)	242
FauI	CCCGC	1 cut(s)	203
FauNDI	CATATG	1 cut(s)	1249
FbaI	TGATCA	3 cut(s)	564, 759, 1450
FokI	GGATG	4 cut(s)	686, 993, 1058, 1825
FspBI	CTAG	2 cut(s)	627, 1626
GlaI	GCGC	4 cut(s)	296, 438, 604, 664
HaeII	RGCGCY	1 cut(s)	606
HapII	CCGG	5 cut(s)	133, 349, 383, 606, 1637
HgaI	GACGC	2 cut(s)	13, 52
HhaI	GCGC	4 cut(s)	297, 439, 605, 665
Hin1I	GRCGYC	1 cut(s)	603
Hin6I	GCGC	4 cut(s)	295, 437, 603, 663
HinP1I	GCGC	4 cut(s)	295, 437, 603, 663
HincII	GTYRAC	5 cut(s)	211, 813, 837, 1150, 1519
HindII	GTYRAC	5 cut(s)	211, 813, 837, 1150, 1519
HindIII	AAGCTT	1 cut(s)	749
HpaII	CCGG	5 cut(s)	133, 349, 383, 606, 1637
HphI	GGTGA	6 cut(s)	82, 304, 436, 559, 1690, 1760
Hpy188III	TCNNGA	5 cut(s)	25, 431, 845, 1106, 1829
Hpy99I	CGWCG	4 cut(s)	68, 242, 424, 1330
HpyAV	CCTTC	8 cut(s)	103, 664, 940, 1123, 1429, 1595, 1732, 1878
HpyCH4III	ACNGT	2 cut(s)	1223, 1494
HpyCH4IV	ACGT	3 cut(s)	509, 575, 1521
HpyCH4V	TGCA	7 cut(s)	448, 538, 558, 894, 1295, 1465, 1802
HpyF10VI	GCNNNNNNNGC	7 cut(s)	179, 303, 445, 611, 662, 748, 1301
HpyF3I	CTNAG	8 cut(s)	35, 375, 657, 882, 1153, 1305, 1409, 1691
HpySE526I	ACGT	3 cut(s)	509, 575, 1521
Hsp92I	GRCGYC	1 cut(s)	603
HspAI	GCGC	4 cut(s)	295, 437, 603, 663
KasI	GGCGCC	1 cut(s)	602
Ksp22I	TGATCA	3 cut(s)	564, 759, 1450
Kzo9I	GATC	9 cut(s)	258, 357, 504, 564, 759, 1450, 1561, 1650, 1684
LguI	GCTCTTC	1 cut(s)	590
LmnI	GCTCC	3 cut(s)	12, 1070, 1763
Lsp1109I	GCAGC	4 cut(s)	18, 251, 1153, 1368
LweI	GCATC	1 cut(s)	729
MaeI	CTAG	2 cut(s)	627, 1626
MaeII	ACGT	3 cut(s)	509, 575, 1521
MaeIII	GTNAC	4 cut(s)	1020, 1231, 1741, 1789
MalI	GATC	9 cut(s)	260, 359, 506, 566, 761, 1452, 1563, 1652, 1686
MbiI	CCGCTC	1 cut(s)	600
MboI	GATC	9 cut(s)	258, 357, 504, 564, 759, 1450, 1561, 1650, 1684
MflI	RGATCY	1 cut(s)	1561
MhlI	GDGCHC	1 cut(s)	41
MlsI	TGGCCA	1 cut(s)	1065
MluNI	TGGCCA	1 cut(s)	1065
Mly113I	GGCGCC	1 cut(s)	603
MlyI	GAGTC	7 cut(s)	119, 367, 398, 467, 878, 1145, 1454
MmeI	TCCRAC	1 cut(s)	153
Mox20I	TGGCCA	1 cut(s)	1065
MroXI	GAANNNNTTC	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	1065
MseI	TTAA	6 cut(s)	858, 993, 1383, 1574, 1701, 1860
MslI	CAYNNNNRTG	1 cut(s)	894
Msp20I	TGGCCA	1 cut(s)	1065
MspI	CCGG	5 cut(s)	133, 349, 383, 606, 1637
MspR9I	CCNGG	3 cut(s)	1637, 1727, 1809
MvaI	CCWGG	2 cut(s)	1727, 1809
MvnI	CGCG	2 cut(s)	63, 68
MwoI	GCNNNNNNNGC	7 cut(s)	179, 303, 445, 611, 662, 748, 1301
NarI	GGCGCC	1 cut(s)	603
NciI	CCSGG	1 cut(s)	1637
NcoI	CCATGG	2 cut(s)	177, 1066
NdeI	CATATG	1 cut(s)	1249
NdeII	GATC	9 cut(s)	258, 357, 504, 564, 759, 1450, 1561, 1650, 1684
NlaIV	GGNNCC	5 cut(s)	137, 604, 690, 805, 1866
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	3 cut(s)	1020, 1231, 1741
NspI	RCATGY	1 cut(s)	484
NspV	TTCGAA	1 cut(s)	1433
OliI	CACNNNNGTG	1 cut(s)	894
PaeR7I	CTCGAG	1 cut(s)	431
PciSI	GCTCTTC	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	3 cut(s)	114, 237, 399
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	7 cut(s)	427, 451, 517, 795, 1253, 1322, 1795
PleI	GAGTC	7 cut(s)	119, 367, 398, 467, 877, 1145, 1453
PluTI	GGCGCC	1 cut(s)	606
PpsI	GAGTC	7 cut(s)	119, 367, 398, 467, 877, 1145, 1453
Ppu21I	YACGTR	1 cut(s)	510
PpuMI	RGGWCCY	1 cut(s)	1864
Psp1406I	AACGTT	1 cut(s)	1521
Psp5II	RGGWCCY	1 cut(s)	1864
Psp6I	CCWGG	2 cut(s)	1725, 1807
PspGI	CCWGG	2 cut(s)	1725, 1807
PspN4I	GGNNCC	5 cut(s)	137, 604, 690, 805, 1866
PspPI	GGNCC	9 cut(s)	55, 70, 135, 193, 368, 803, 907, 1661, 1864
PspPPI	RGGWCCY	1 cut(s)	1864
PstI	CTGCAG	1 cut(s)	896
PstNI	CAGNNNCTG	2 cut(s)	31, 1448
PsuI	RGATCY	1 cut(s)	1561
RsaI	GTAC	4 cut(s)	494, 548, 784, 928
RsaNI	GTAC	4 cut(s)	493, 547, 783, 927
RseI	CAYNNNNRTG	1 cut(s)	894
Rsr2I	CGGWCCG	1 cut(s)	368
RsrII	CGGWCCG	1 cut(s)	368
SapI	GCTCTTC	1 cut(s)	590
SaqAI	TTAA	6 cut(s)	858, 993, 1383, 1574, 1701, 1860
Sau3AI	GATC	9 cut(s)	258, 357, 504, 564, 759, 1450, 1561, 1650, 1684
Sau96I	GGNCC	9 cut(s)	55, 70, 135, 193, 368, 803, 907, 1661, 1864
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	7 cut(s)	119, 367, 398, 467, 878, 1145, 1454
ScrFI	CCNGG	3 cut(s)	1637, 1727, 1809
SduI	GDGCHC	1 cut(s)	41
SfaNI	GCATC	1 cut(s)	729
SfcI	CTRYAG	2 cut(s)	892, 1277
SfoI	GGCGCC	1 cut(s)	604
Sfr274I	CTCGAG	1 cut(s)	431
SfuI	TTCGAA	1 cut(s)	1433
SinI	GGWCC	4 cut(s)	135, 368, 907, 1864
SlaI	CTCGAG	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	894
SmlI	CTYRAG	2 cut(s)	431, 1778
SmoI	CTYRAG	2 cut(s)	431, 1778
SpeI	ACTAGT	1 cut(s)	626
SspDI	GGCGCC	1 cut(s)	602
SspI	AATATT	1 cut(s)	962
SspMI	CTAG	2 cut(s)	627, 1626
StyD4I	CCNGG	3 cut(s)	1635, 1725, 1807
StyI	CCWWGG	2 cut(s)	177, 1066
TaaI	ACNGT	2 cut(s)	1223, 1494
TaiI	ACGT	3 cut(s)	512, 578, 1524
TaqI	TCGA	7 cut(s)	123, 240, 402, 432, 1325, 1433, 1653
TaqII	GACCGA	1 cut(s)	385
TatI	WGTACW	2 cut(s)	492, 926
TauI	GCSGC	8 cut(s)	60, 63, 71, 161, 176, 306, 382, 603
TfiI	GAWTC	7 cut(s)	427, 451, 517, 795, 1253, 1322, 1795
Tru1I	TTAA	6 cut(s)	858, 993, 1383, 1574, 1701, 1860
Tru9I	TTAA	6 cut(s)	858, 993, 1383, 1574, 1701, 1860
TscAI	CASTG	4 cut(s)	304, 896, 901, 1750
TseFI	GTSAC	3 cut(s)	1020, 1231, 1741
TseI	GCWGC	4 cut(s)	31, 264, 1166, 1356
Tsp45I	GTSAC	3 cut(s)	1020, 1231, 1741
TspGWI	ACGGA	2 cut(s)	510, 1343
TspRI	CASTG	4 cut(s)	304, 896, 901, 1750
VpaK11BI	GGWCC	4 cut(s)	135, 368, 907, 1864
XapI	RAATTY	7 cut(s)	698, 822, 1185, 1309, 1334, 1667, 1824
XceI	RCATGY	1 cut(s)	484
XcmI	CCANNNNNNNNNTGG	2 cut(s)	49, 814
XhoI	CTCGAG	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	335
XspI	CTAG	2 cut(s)	627, 1626
ZrmI	AGTACT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.