Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001898

Physical Location & Seq

Genomic Coordinates Reverse (-)

67185313 .. 67185819

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020654

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAACACTCTCTGGTGCACCGACGGCTTCCTCACCAATAGTCACAGCCCTAAGAAGTTCAGGTCTCGCTGGAAGAAGATCGTCTTCGGACCGACTCAGCCGCCGGACTGCCTCGTGGTTTTCGACTCTGAGAGGAAGCCGTCGGTGATTCTCGAGGCGCATAGGTTGCAGATTCCGATTGTTTCGCTTGTGGACTCGGACATGCCTATCGAGTACTACAACAAGATCACGTATCCGATTCCGTGTAATTCCTCGGTGCAATTTGTGTACCTGTTCTGCAATTTGATCACCAAGACTGAGCGAGTGGGGGTTATAAAGGAGGCTAAGAGCGCAAAGAAGGATGAGGTGCTTGTGGTTCAATCAATTAAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

125

Amino Acids

14.16

Weight (kDa)

9.1

Isoelectric Point (pI)

48.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	32 - 99	5.8e-11	Ribosomal protein S2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03600
fragaria_vesca	FvH4_7g08140
malus_domestica	MD02G1230600.v1.1
prunus_persica	Prupe.2G107500_v2.0.a1
pyrus_communis	pycom02g19970 pycom07g06540
rosa_chinensis	RchiOBHm_Chr1g0341081 RchiOBHm_Chr1g0363821 RchiOBHm_Chr1g0383121 RchiOBHm_Chr2g0085551 RchiOBHm_Chr3g0481141 RchiOBHm_Chr5g0027611 RchiOBHm_Chr5g0054321 RchiOBHm_Chr6g0246101
rosa_laevigata	RLG00000003952 RLG00000006546 RLG00000013359 RLG00000020654 RLG00000029063
rosa_multiflora	Rmu_sc0000533.1_g000047 Rmu_sc0000821.1_g000002 Rmu_sc0001211.1_g000068 Rmu_sc0002200.1_g000002 Rmu_sc0004332.1_g000001 Rmu_sc0004577.1_g000014 Rmu_sc0008563.1_g000010 Rmu_sc0012351.1_g000004 Rmu_ssc0000190.1_g000008
rosa_roxburghii	Rroxscaffold_1G00011600 Rroxscaffold_4G00311710
rosa_rugosa	Rorug01G0160000.1 Rorug05G0092000
rosa_samantha	Rh1AG174300 Rh1BG142600 Rh1BG221400 Rh1CG162100 Rh1CG365900 Rh1DG174200 Rh1DG248400 Rh1DG383600 Rh3AG240800 Rh5AG444100 Rh5DG194400
rosa_wichuraiana	Rw1G014550 Rw4G015450 Rw5G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	314
AciI	CCGC	1 cut(s)	101
AfaI	GTAC	2 cut(s)	215, 269
AgsI	TTSAA	1 cut(s)	359
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	1 cut(s)	69
Alw44I	GTGCAC	1 cut(s)	16
Ama87I	CYCGRG	1 cut(s)	152
ApaLI	GTGCAC	1 cut(s)	16
AspLEI	GCGC	2 cut(s)	160, 332
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	3 cut(s)	25, 157, 280
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	20
BauI	CACGAG	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	20
BceAI	ACGGC	2 cut(s)	40, 124
BciVI	GTATCC	1 cut(s)	243
BclI	TGATCA	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	69
BfuI	GTATCC	1 cut(s)	243
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
BmcAI	AGTACT	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	76
BsaAI	YACGTR	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	346
BseMII	CTCAG	3 cut(s)	110, 120, 288
BseSI	GKGCMC	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	69
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	3 cut(s)	78, 225, 285
BspACI	CCGC	1 cut(s)	101
BspCNI	CTCAG	3 cut(s)	109, 121, 289
BspTNI	GGTCTC	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	3 cut(s)	78, 225, 285
BssSI	CACGAG	1 cut(s)	113
Bst2BI	CACGAG	1 cut(s)	113
BstAPI	GCANNNNNTGC	1 cut(s)	166
BstBAI	YACGTR	1 cut(s)	231
BstDEI	CTNAG	5 cut(s)	51, 96, 129, 297, 324
BstF5I	GGATG	1 cut(s)	346
BstHHI	GCGC	2 cut(s)	160, 332
BstKTI	GATC	3 cut(s)	81, 228, 288
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	3 cut(s)	78, 225, 285
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 166, 329
BstNSI	RCATGY	1 cut(s)	205
BstSLI	GKGCMC	1 cut(s)	20
BstV2I	GAAGAC	1 cut(s)	76
BsuI	GTATCC	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	346
CfoI	GCGC	2 cut(s)	160, 332
Cfr13I	GGNCC	1 cut(s)	89
CpoI	CGGWCCG	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	214, 268
CspI	CGGWCCG	1 cut(s)	89
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	5 cut(s)	27, 48, 100, 139, 323
CviKI_1	RGCY	5 cut(s)	27, 48, 100, 139, 323
CviQI	GTAC	2 cut(s)	214, 268
DdeI	CTNAG	5 cut(s)	51, 96, 129, 297, 324
DpnI	GATC	3 cut(s)	80, 227, 287
DpnII	GATC	3 cut(s)	78, 225, 285
Eco31I	GGTCTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	152
FaeI	CATG	1 cut(s)	205
FaiI	YATR	3 cut(s)	162, 203, 314
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	1 cut(s)	201
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	1 cut(s)	101
GlaI	GCGC	2 cut(s)	159, 331
GluI	GCNGC	1 cut(s)	101
HapII	CCGG	1 cut(s)	104
HhaI	GCGC	2 cut(s)	160, 332
Hin1II	CATG	1 cut(s)	205
Hin6I	GCGC	2 cut(s)	158, 330
HinP1I	GCGC	2 cut(s)	158, 330
HinfI	GANTC	6 cut(s)	94, 125, 148, 172, 194, 238
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	3 cut(s)	25, 157, 280
Hpy166II	GTNNAC	3 cut(s)	18, 193, 268
Hpy188I	TCNGA	5 cut(s)	89, 130, 177, 199, 237
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	3 cut(s)	18, 193, 268
Hpy99I	CGWCG	2 cut(s)	26, 145
HpyAV	CCTTC	1 cut(s)	331
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	4 cut(s)	18, 169, 259, 279
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 166, 329
HpyF3I	CTNAG	5 cut(s)	51, 96, 129, 297, 324
HpySE526I	ACGT	1 cut(s)	230
Hsp92II	CATG	1 cut(s)	205
HspAI	GCGC	2 cut(s)	158, 330
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	78, 225, 285
LpnPI	CCDG	4 cut(s)	46, 55, 117, 284
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	3 cut(s)	80, 227, 287
MboI	GATC	3 cut(s)	78, 225, 285
MboII	GAAGA	3 cut(s)	76, 85, 88
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	4 cut(s)	247, 260, 280, 363
MlyI	GAGTC	3 cut(s)	88, 119, 188
MnlI	CCTC	7 cut(s)	41, 122, 126, 148, 262, 313, 337
MseI	TTAA	1 cut(s)	366
MspI	CCGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	3 cut(s)	24, 166, 329
NdeII	GATC	3 cut(s)	78, 225, 285
NlaIII	CATG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PfeI	GAWTC	3 cut(s)	148, 172, 238
PkrI	GCNGC	1 cut(s)	102
PleI	GAGTC	3 cut(s)	88, 119, 188
PpsI	GAGTC	3 cut(s)	88, 119, 188
Ppu21I	YACGTR	1 cut(s)	231
PsiI	TTATAA	1 cut(s)	314
PspPI	GGNCC	1 cut(s)	89
RsaI	GTAC	2 cut(s)	215, 269
RsaNI	GTAC	2 cut(s)	214, 268
Rsr2I	CGGWCCG	1 cut(s)	89
RsrII	CGGWCCG	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	3 cut(s)	78, 225, 285
Sau96I	GGNCC	1 cut(s)	89
ScaI	AGTACT	1 cut(s)	215
SchI	GAGTC	3 cut(s)	88, 119, 188
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	5 cut(s)	65, 167, 233, 273, 348
Sfr274I	CTCGAG	1 cut(s)	152
SinI	GGWCC	1 cut(s)	89
SlaI	CTCGAG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	4 cut(s)	247, 260, 280, 363
SsiI	CCGC	1 cut(s)	101
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	3 cut(s)	123, 153, 210
TaqII	GACCGA	1 cut(s)	106
TasI	AATT	4 cut(s)	247, 260, 280, 363
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	3 cut(s)	148, 172, 238
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TseFI	GTSAC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	231
VneI	GTGCAC	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	89
XceI	RCATGY	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	152
ZrmI	AGTACT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.