Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004577.1

Orthogroup ID

OG0001898

Physical Location & Seq

Genomic Coordinates Reverse (-)

43976 .. 45024

Gene Structure 1049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004577.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

atgagccaaagttatcccacttactccatctctctctccatatcaacgccggcgacatgctgcatctcctcccttcgcctgaatctacgtcgccaccttctccggcgagctgcttcagagctgcaacgacagagatgggctcggattgcagatcattgtcggtgcagtctctcttgcagggccgccttctcctccggcaaggagtacagatccaaggtcgaggccgagctctctgaggtctgcgctaacatcctgaggattcgtctgattttcatcgccgccatggccgagagcaaggcccgcttcatgttcgtcaacaccaactccctctgggacgaaatcgtcgaacaaatgaccaagaagatcggctgctactctccctccatgaacactctctggcgcaccggcggcttcctcaccaatagtcatagccctaagaagttcaggtctcgccggaagaagatcgtcttcggaccgactcagccgccggactgcctcgtggttttcgactccgagaggaagtcgtcggtgattctcgaggcgcataggttgcagattccaattgtttcgcttgtggactcggacatgcctatcgagtactacaacaagatcacgtattcgattccgtgtaattcctcggtgcaatttgtgtacctgttctgcaatttgatcaccaagacgttcatgcttcagcagaagaaaagcggtgctgattcggccgaaattgagactagtgagcgagtgggggttatagaggaggctaagagcgcaaagaaggatgaggtgcttatggttcaatcaattaaaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

270

Amino Acids

30.66

Weight (kDa)

9.44

Isoelectric Point (pI)

61.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03600
fragaria_vesca	FvH4_7g08140
malus_domestica	MD02G1230600.v1.1
prunus_persica	Prupe.2G107500_v2.0.a1
pyrus_communis	pycom02g19970 pycom07g06540
rosa_chinensis	RchiOBHm_Chr1g0341081 RchiOBHm_Chr1g0363821 RchiOBHm_Chr1g0383121 RchiOBHm_Chr2g0085551 RchiOBHm_Chr3g0481141 RchiOBHm_Chr5g0027611 RchiOBHm_Chr5g0054321 RchiOBHm_Chr6g0246101
rosa_laevigata	RLG00000003952 RLG00000006546 RLG00000013359 RLG00000020654 RLG00000029063
rosa_multiflora	Rmu_sc0000533.1_g000047 Rmu_sc0000821.1_g000002 Rmu_sc0001211.1_g000068 Rmu_sc0002200.1_g000002 Rmu_sc0004332.1_g000001 Rmu_sc0004577.1_g000014 Rmu_sc0008563.1_g000010 Rmu_sc0012351.1_g000004 Rmu_ssc0000190.1_g000008
rosa_roxburghii	Rroxscaffold_1G00011600 Rroxscaffold_4G00311710
rosa_rugosa	Rorug01G0160000.1 Rorug05G0092000
rosa_samantha	Rh1AG174300 Rh1BG142600 Rh1BG221400 Rh1CG162100 Rh1CG365900 Rh1DG174200 Rh1DG248400 Rh1DG383600 Rh3AG240800 Rh5AG444100 Rh5DG194400
rosa_wichuraiana	Rw1G014550 Rw4G015450 Rw5G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
AciI	CCGC	6 cut(s)	183, 279, 301, 408, 485, 705
AclWI	GGATC	1 cut(s)	204
AcoI	YGGCCR	2 cut(s)	285, 717
AcuI	CTGAAG	2 cut(s)	99, 674
AfaI	GTAC	3 cut(s)	206, 599, 653
AgsI	TTSAA	1 cut(s)	797
AhlI	ACTAGT	1 cut(s)	731
AluBI	AGCT	3 cut(s)	110, 121, 229
AluI	AGCT	3 cut(s)	110, 121, 229
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	3 cut(s)	173, 453, 722
AlwI	GGATC	1 cut(s)	204
Ama87I	CYCGRG	1 cut(s)	536
AoxI	GGCC	5 cut(s)	180, 222, 285, 297, 717
ApeKI	GCWGC	4 cut(s)	60, 110, 121, 369
AspLEI	GCGC	4 cut(s)	245, 402, 544, 770
AspS9I	GGNCC	3 cut(s)	180, 298, 473
AsuHPI	GGTGA	3 cut(s)	409, 541, 664
AvaI	CYCGRG	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	473
AxyI	CCTNAGG	1 cut(s)	254
BanII	GRGCYC	2 cut(s)	142, 231
BauI	CACGAG	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	460
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	4 cut(s)	47, 97, 108, 356
BccI	CCATC	2 cut(s)	35, 129
BclI	TGATCA	1 cut(s)	669
BcoDI	GTCTC	3 cut(s)	173, 453, 722
BcuI	ACTAGT	1 cut(s)	731
BfaI	CTAG	1 cut(s)	732
BglI	GCCNNNNNGGC	1 cut(s)	284
BisI	GCNGC	8 cut(s)	61, 111, 122, 183, 279, 370, 409, 485
BlsI	GCNGC	8 cut(s)	62, 112, 123, 184, 280, 371, 410, 486
BmcAI	AGTACT	1 cut(s)	599
Bme18I	GGWCC	1 cut(s)	473
BmeT110I	CYCGRG	1 cut(s)	536
BmgT120I	GGNCC	3 cut(s)	180, 298, 473
BmsI	GCATC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	460
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
BsaAI	YACGTR	1 cut(s)	615
BsaBI	GATNNNNATC	1 cut(s)	272
BsaI	GGTCTC	1 cut(s)	453
BsaJI	CCNNGG	3 cut(s)	213, 282, 636
BsaXI	ACNNNNNCTCC	4 cut(s)	308, 338, 365, 395
Bse118I	RCCGGY	2 cut(s)	49, 404
Bse21I	CCTNAGG	1 cut(s)	254
Bse8I	GATNNNNATC	1 cut(s)	272
BseDI	CCNNGG	3 cut(s)	213, 282, 636
BseGI	GGATG	2 cut(s)	249, 784
BseJI	GATNNNNATC	1 cut(s)	272
BseMII	CTCAG	3 cut(s)	225, 245, 494
BseRI	GAGGAG	3 cut(s)	58, 181, 770
BseX3I	CGGCCG	1 cut(s)	717
BseXI	GCAGC	4 cut(s)	47, 97, 108, 356
BsgI	GTGCAG	1 cut(s)	184
Bsh1285I	CGRYCG	1 cut(s)	720
BshFI	GGCC	5 cut(s)	182, 224, 287, 299, 719
BsiEI	CGRYCG	1 cut(s)	720
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	536
BsiSI	CCGG	6 cut(s)	50, 103, 195, 405, 454, 488
BslFI	GGGAC	1 cut(s)	347
BsmAI	GTCTC	3 cut(s)	173, 453, 722
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	5 cut(s)	182, 224, 287, 299, 719
Bso31I	GGTCTC	1 cut(s)	453
BsoBI	CYCGRG	1 cut(s)	536
Bsp1286I	GDGCHC	2 cut(s)	142, 231
Bsp143I	GATC	6 cut(s)	151, 209, 363, 462, 609, 669
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	6 cut(s)	183, 279, 301, 408, 485, 705
BspANI	GGCC	5 cut(s)	182, 224, 287, 299, 719
BspCNI	CTCAG	3 cut(s)	226, 246, 493
BspPI	GGATC	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	453
BsrFI	RCCGGY	2 cut(s)	49, 404
BssAI	RCCGGY	2 cut(s)	49, 404
BssECI	CCNNGG	3 cut(s)	213, 282, 636
BssMI	GATC	6 cut(s)	151, 209, 363, 462, 609, 669
BssSI	CACGAG	1 cut(s)	497
BssT1I	CCWWGG	2 cut(s)	213, 282
Bst2BI	CACGAG	1 cut(s)	497
BstAPI	GCANNNNNTGC	1 cut(s)	550
BstBAI	YACGTR	1 cut(s)	615
BstC8I	GCNNGC	3 cut(s)	51, 108, 301
BstDEI	CTNAG	5 cut(s)	234, 254, 435, 480, 762
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	2 cut(s)	249, 784
BstHHI	GCGC	4 cut(s)	245, 402, 544, 770
BstKTI	GATC	6 cut(s)	154, 212, 366, 465, 612, 672
BstMAI	GTCTC	3 cut(s)	173, 453, 722
BstMBI	GATC	6 cut(s)	151, 209, 363, 462, 609, 669
BstMCI	CGRYCG	1 cut(s)	720
BstMWI	GCNNNNNNNGC	7 cut(s)	146, 284, 300, 408, 550, 716, 767
BstNSI	RCATGY	2 cut(s)	60, 589
BstV1I	GCAGC	4 cut(s)	47, 97, 108, 356
BstV2I	GAAGAC	1 cut(s)	460
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BstZI	CGGCCG	1 cut(s)	717
Bsu36I	CCTNAGG	1 cut(s)	254
BsuRI	GGCC	5 cut(s)	182, 224, 287, 299, 719
BtgI	CCRYGG	1 cut(s)	282
BtgZI	GCGATG	1 cut(s)	259
BtsCI	GGATG	2 cut(s)	249, 784
Cac8I	GCNNGC	3 cut(s)	51, 108, 301
CfoI	GCGC	4 cut(s)	245, 402, 544, 770
Cfr10I	RCCGGY	2 cut(s)	49, 404
Cfr13I	GGNCC	3 cut(s)	180, 298, 473
CpoI	CGGWCCG	1 cut(s)	473
Csp6I	GTAC	3 cut(s)	205, 598, 652
CspI	CGGWCCG	1 cut(s)	473
CviAII	CATG	6 cut(s)	57, 283, 307, 385, 586, 685
CviQI	GTAC	3 cut(s)	205, 598, 652
DdeI	CTNAG	5 cut(s)	234, 254, 435, 480, 762
DpnI	GATC	6 cut(s)	153, 211, 365, 464, 611, 671
DpnII	GATC	6 cut(s)	151, 209, 363, 462, 609, 669
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
EaeI	YGGCCR	2 cut(s)	285, 717
EagI	CGGCCG	1 cut(s)	717
Ecl136II	GAGCTC	1 cut(s)	229
EclXI	CGGCCG	1 cut(s)	717
Eco130I	CCWWGG	2 cut(s)	213, 282
Eco24I	GRGCYC	2 cut(s)	142, 231
Eco31I	GGTCTC	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	473
Eco52I	CGGCCG	1 cut(s)	717
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	99, 674
Eco81I	CCTNAGG	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	536
EcoICRI	GAGCTC	1 cut(s)	229
EcoT14I	CCWWGG	2 cut(s)	213, 282
EcoT38I	GRGCYC	2 cut(s)	142, 231
ErhI	CCWWGG	2 cut(s)	213, 282
FaeI	CATG	6 cut(s)	60, 286, 310, 388, 589, 688
FalI	AAGNNNNNCTT	4 cut(s)	287, 319, 452, 484
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	6 cut(s)	56, 282, 306, 384, 585, 684
FauI	CCCGC	1 cut(s)	308
FbaI	TGATCA	1 cut(s)	669
Fnu4HI	GCNGC	8 cut(s)	61, 111, 122, 183, 279, 370, 409, 485
FokI	GGATG	2 cut(s)	236, 791
FriOI	GRGCYC	2 cut(s)	142, 231
Fsp4HI	GCNGC	8 cut(s)	61, 111, 122, 183, 279, 370, 409, 485
FspBI	CTAG	1 cut(s)	732
GlaI	GCGC	4 cut(s)	244, 401, 543, 769
GluI	GCNGC	8 cut(s)	61, 111, 122, 183, 279, 370, 409, 485
HaeIII	GGCC	5 cut(s)	182, 224, 287, 299, 719
HapII	CCGG	6 cut(s)	50, 103, 195, 405, 454, 488
HhaI	GCGC	4 cut(s)	245, 402, 544, 770
Hin1II	CATG	6 cut(s)	60, 286, 310, 388, 589, 688
Hin6I	GCGC	4 cut(s)	243, 400, 542, 768
HinP1I	GCGC	4 cut(s)	243, 400, 542, 768
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	9 cut(s)	82, 259, 478, 509, 532, 556, 578, 622, 713
HpaII	CCGG	6 cut(s)	50, 103, 195, 405, 454, 488
HphI	GGTGA	3 cut(s)	409, 541, 664
Hpy166II	GTNNAC	3 cut(s)	316, 577, 652
Hpy188I	TCNGA	7 cut(s)	118, 144, 235, 267, 473, 514, 583
Hpy188III	TCNNGA	2 cut(s)	253, 536
Hpy8I	GTNNAC	3 cut(s)	316, 577, 652
Hpy99I	CGWCG	3 cut(s)	93, 347, 529
HpyAV	CCTTC	4 cut(s)	83, 107, 196, 769
HpyCH4IV	ACGT	3 cut(s)	88, 614, 680
HpyCH4V	TGCA	8 cut(s)	63, 124, 149, 165, 177, 553, 643, 663
HpyF10VI	GCNNNNNNNGC	7 cut(s)	146, 284, 300, 408, 550, 716, 767
HpyF3I	CTNAG	5 cut(s)	234, 254, 435, 480, 762
HpySE526I	ACGT	3 cut(s)	88, 614, 680
Hsp92II	CATG	6 cut(s)	60, 286, 310, 388, 589, 688
HspAI	GCGC	4 cut(s)	243, 400, 542, 768
KroI	GCCGGC	1 cut(s)	49
KroNI	GCCGGC	1 cut(s)	51
Ksp22I	TGATCA	1 cut(s)	669
Kzo9I	GATC	6 cut(s)	151, 209, 363, 462, 609, 669
Lsp1109I	GCAGC	4 cut(s)	47, 97, 108, 356
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	732
MaeII	ACGT	3 cut(s)	88, 614, 680
MalI	GATC	6 cut(s)	153, 211, 365, 464, 611, 671
MboI	GATC	6 cut(s)	151, 209, 363, 462, 609, 669
MboII	GAAGA	5 cut(s)	373, 460, 469, 472, 709
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	2 cut(s)	142, 231
MluCI	AATT	6 cut(s)	561, 631, 644, 664, 723, 801
MlyI	GAGTC	3 cut(s)	472, 503, 572
MreI	CGCCGGCG	1 cut(s)	49
MroNI	GCCGGC	1 cut(s)	49
MseI	TTAA	1 cut(s)	804
MspI	CCGG	6 cut(s)	50, 103, 195, 405, 454, 488
MunI	CAATTG	1 cut(s)	561
MwoI	GCNNNNNNNGC	7 cut(s)	146, 284, 300, 408, 550, 716, 767
NaeI	GCCGGC	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	6 cut(s)	151, 209, 363, 462, 609, 669
NgoMIV	GCCGGC	1 cut(s)	49
NlaIII	CATG	6 cut(s)	60, 286, 310, 388, 589, 688
NmeAIII	GCCGAG	2 cut(s)	250, 313
NspI	RCATGY	2 cut(s)	60, 589
PaeR7I	CTCGAG	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	2 cut(s)	342, 504
PdiI	GCCGGC	1 cut(s)	51
PfeI	GAWTC	6 cut(s)	82, 259, 532, 556, 622, 713
PkrI	GCNGC	8 cut(s)	62, 112, 123, 184, 280, 371, 410, 486
PleI	GAGTC	3 cut(s)	472, 503, 572
PpsI	GAGTC	3 cut(s)	472, 503, 572
Ppu21I	YACGTR	1 cut(s)	615
Psp124BI	GAGCTC	1 cut(s)	231
PspPI	GGNCC	3 cut(s)	180, 298, 473
PsuI	RGATCY	1 cut(s)	209
RsaI	GTAC	3 cut(s)	206, 599, 653
RsaNI	GTAC	3 cut(s)	205, 598, 652
Rsr2I	CGGWCCG	1 cut(s)	473
RsrII	CGGWCCG	1 cut(s)	473
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	804
SatI	GCNGC	8 cut(s)	61, 111, 122, 183, 279, 370, 409, 485
Sau3AI	GATC	6 cut(s)	151, 209, 363, 462, 609, 669
Sau96I	GGNCC	3 cut(s)	180, 298, 473
ScaI	AGTACT	1 cut(s)	599
SchI	GAGTC	3 cut(s)	472, 503, 572
SduI	GDGCHC	2 cut(s)	142, 231
SfaNI	GCATC	1 cut(s)	72
Sfr274I	CTCGAG	1 cut(s)	536
SgrAI	CRCCGGYG	2 cut(s)	49, 404
SinI	GGWCC	1 cut(s)	473
SlaI	CTCGAG	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
SpeI	ACTAGT	1 cut(s)	731
Sse9I	AATT	6 cut(s)	561, 631, 644, 664, 723, 801
SsiI	CCGC	6 cut(s)	183, 279, 301, 408, 485, 705
SspMI	CTAG	1 cut(s)	732
SstI	GAGCTC	1 cut(s)	231
StyI	CCWWGG	2 cut(s)	213, 282
TaiI	ACGT	3 cut(s)	91, 617, 683
TaqI	TCGA	6 cut(s)	219, 345, 507, 537, 594, 620
TaqII	GACCGA	1 cut(s)	490
TasI	AATT	6 cut(s)	561, 631, 644, 664, 723, 801
TatI	WGTACW	2 cut(s)	204, 597
TauI	GCSGC	4 cut(s)	185, 281, 411, 487
TfiI	GAWTC	6 cut(s)	82, 259, 532, 556, 622, 713
Tru1I	TTAA	1 cut(s)	804
Tru9I	TTAA	1 cut(s)	804
TseI	GCWGC	4 cut(s)	60, 110, 121, 369
TspDTI	ATGAA	4 cut(s)	262, 295, 401, 673
TspGWI	ACGGA	1 cut(s)	615
VpaK11BI	GGWCC	1 cut(s)	473
XceI	RCATGY	2 cut(s)	60, 589
XhoI	CTCGAG	1 cut(s)	536
XspI	CTAG	1 cut(s)	732
ZrmI	AGTACT	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.