Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001898

Physical Location & Seq

Genomic Coordinates Forward (+)

33445384 .. 33452234

Gene Structure 6851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG174300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1863 bp

ATGACGCTCCACTCCATAGTAATCCAGAAGCTTCTGAGCACCAACGCCCATTTGGGCCGGCGCGTCGCGGCCCACCACTTCAAGCAGTTCACCTTCGGCCACCGCAACGGCATGGCCGTCATCGACTCCGACCGGACCCTCATCTGCCTCCGCAACGCCGCTCAGTTCATCGCCGCCATGGCCGAGAACAAGGCCCGCTTCATGTTCGTCAACACCAACTCCCTCTGGGACGAAATCGTCGAACAAATGACCAAGAAGATCGGCTGCTACTCTCCCTCCATGAACACTCTCTGGCGCACCGGCGGCTTCCTCACCAATAGTCACAGCCCGAAGAAGTTCAGGTCTCGCCGGAAGAAGATCGTCTTCGGACCGACTCAGCCGCCGGACTGCCTCGTGGTTTTCGACTCCGAGAGGAAGTCATCGGTGATTCTGGAGGCGCATAGGTTGCAGATTCCAATTGTTTCGCTTGTGGACTCGGACATGCCTATTGAGTACTACAACAAGATCACGTATCCGATTCCGTGTAATTCCTCGGTGCAATTTGTGTACCTGTTCTGCAATTTGATCACCAAGACGTTCTTGCTTCAGCAGAAGAAGAGCGGCGCCGTTTCGGCCGAAATTGAGACTAGTGAGCGAGTGGGGGTTATAGAGGAGGCTAAGAGCGCAAAGAAGGATGAGTTGCTTGTGGTTCCTTACGAATTCTTACACATTTCTACTGATGTTGAGAAAATTGAGGAGATGCTGGACAAGCTTGTTGTGATCAAGTTCAATGGAGGTTTGGGTACAAGTATTGGATTCGGTGGCCCCAAGTCAGCAATGGAAATTTTTGATGGGTTGACATCTCTTGACTTAATTGTTAATCAAATTGAGTCTCTCAATTCTAAGTATCACTGCAGTGTTCCTTTGGTCCTTGTGAACACAGATAGTACACATGAAGATACGCTGAAGGTCTTGGAGAAATATTCCAATTCGGACATTGATATTCAGTCTATTAAACAGAACAAGTCACAGGGAGGACAGAGTGGCGACGATGAATTGTATCCCTCTGGCCACGGAGCAGTATTGCTTTCGCTTGTGAAAAATGGAACCCTTGACGTCCTATTATCAAAGGGGAAGGAGTATGTCCTTGTGGTTGACTCGGATAATGTGGCTGCTAAAATTGACCCAAAAATTTTAGACCATCTGGTTGAAAACAAGATAGACTACTGTATGGAGGTCACACCTACCTCCTCATATGATTCAGATTTGATTGGTTCACGCCTACAGAAGTTTGAGCTTGCAGAAATAGCTCAGAATTCCGTCAAAGATACGGGGAAATTCAAACTTGTCGATACTGGCAGCTTGTGGTTGAATGTTAGAGCCATTAAAAGGCTTTTGGATAAAGATGAACTAAAGATTGAAGATTTCTCTGTTTCGAAGGAAACAGAGTCTGATCAAGTTCTTCTGCAAGAAACAGCAGTTGGTTCAGCAATACGGTTCTTCAATAATGCTGTTGGTGTCAACGTTCCTAATTCTCAATTTCTTTCAATGAAAAAAACATCAGATCTACTTCTGCTAAAGTCAAATCTCTATATGTATGATGAAGGGGTTGTAGTTCGGAATATAGCTAGAACCAACCCGGCAAATCCTGTGATTGAATTAGGGCCGGAATTTGAAAAGGTGAGTGGCCTTCTAAGTCGCTTTAAGTCCATGCCCGACATTATTGACCTGGACAGCTTGAAGGTCACCGGTGATGTTTGGTTTGGAGCTGGTATAACCCTCAAGGGGAGAGTAACAATTCATGCAGAACCTGGGATGAAATTGGAAATTCCTGATGGAGTAGTAATAGAGAATGAGGATATTAAGGATCCTTCAGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

620

Amino Acids

68.97

Weight (kDa)

5.74

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	11 - 112	8.5e-15	Ribosomal protein S2
Ribosomal_S2	PF00318	126 - 192	6.6e-10	Ribosomal protein S2
UDPGP	PF01704	217 - 588	7.7e-102	UTP--glucose-1-phosphate uridylyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03600
fragaria_vesca	FvH4_7g08140
malus_domestica	MD02G1230600.v1.1
prunus_persica	Prupe.2G107500_v2.0.a1
pyrus_communis	pycom02g19970 pycom07g06540
rosa_chinensis	RchiOBHm_Chr1g0341081 RchiOBHm_Chr1g0363821 RchiOBHm_Chr1g0383121 RchiOBHm_Chr2g0085551 RchiOBHm_Chr3g0481141 RchiOBHm_Chr5g0027611 RchiOBHm_Chr5g0054321 RchiOBHm_Chr6g0246101
rosa_laevigata	RLG00000003952 RLG00000006546 RLG00000013359 RLG00000020654 RLG00000029063
rosa_multiflora	Rmu_sc0000533.1_g000047 Rmu_sc0000821.1_g000002 Rmu_sc0001211.1_g000068 Rmu_sc0002200.1_g000002 Rmu_sc0004332.1_g000001 Rmu_sc0004577.1_g000014 Rmu_sc0008563.1_g000010 Rmu_sc0012351.1_g000004 Rmu_ssc0000190.1_g000008
rosa_roxburghii	Rroxscaffold_1G00011600 Rroxscaffold_4G00311710
rosa_rugosa	Rorug01G0160000.1 Rorug05G0092000
rosa_samantha	Rh1AG174300 Rh1BG142600 Rh1BG221400 Rh1CG162100 Rh1CG365900 Rh1DG174200 Rh1DG248400 Rh1DG383600 Rh3AG240800 Rh5AG444100 Rh5DG194400
rosa_wichuraiana	Rw1G014550 Rw4G015450 Rw5G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
AatII	GACGTC	1 cut(s)	1098
AccB1I	GGYRCC	1 cut(s)	602
AccBSI	CCGCTC	2 cut(s)	161, 600
AccII	CGCG	2 cut(s)	63, 68
AciI	CCGC	9 cut(s)	68, 103, 151, 159, 174, 196, 303, 380, 600
AclI	AACGTT	1 cut(s)	1503
AclWI	GGATC	2 cut(s)	1841, 1854
AcoI	YGGCCR	5 cut(s)	97, 114, 180, 612, 1048
AcsI	RAATTY	7 cut(s)	698, 822, 1170, 1294, 1316, 1649, 1806
AcuI	CTGAAG	3 cut(s)	569, 965, 1836
AcyI	GRCGYC	2 cut(s)	603, 1095
AfaI	GTAC	4 cut(s)	494, 548, 784, 928
AfiI	CCNNNNNNNGG	2 cut(s)	1368, 1764
AgeI	ACCGGT	1 cut(s)	1727
AhlI	ACTAGT	1 cut(s)	626
AjnI	CCWGG	2 cut(s)	1707, 1789
AjuI	GAANNNNNNNTTGG	2 cut(s)	1443, 1475
AleI	CACNNNNGTG	1 cut(s)	894
AluBI	AGCT	8 cut(s)	31, 751, 1276, 1289, 1341, 1607, 1716, 1748
AluI	AGCT	8 cut(s)	31, 751, 1276, 1289, 1341, 1607, 1716, 1748
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	3 cut(s)	348, 617, 876
AlwI	GGATC	2 cut(s)	1841, 1854
AlwNI	CAGNNNCTG	2 cut(s)	1430, 1790
ApeKI	GCWGC	3 cut(s)	264, 1151, 1338
ApoI	RAATTY	7 cut(s)	698, 822, 1170, 1294, 1316, 1649, 1806
AsiGI	ACCGGT	1 cut(s)	1727
Asp700I	GAANNNNTTC	1 cut(s)	335
AspLEI	GCGC	5 cut(s)	63, 297, 439, 605, 665
AspS9I	GGNCC	8 cut(s)	55, 70, 135, 193, 368, 803, 907, 1643
AsuC2I	CCSGG	1 cut(s)	1619
AsuHPI	GGTGA	7 cut(s)	82, 304, 436, 559, 1672, 1717, 1742
AsuII	TTCGAA	1 cut(s)	1415
AvaII	GGWCC	3 cut(s)	135, 368, 907
BalI	TGGCCA	1 cut(s)	1050
BamHI	GGATCC	1 cut(s)	1846
BanI	GGYRCC	1 cut(s)	602
BauI	CACGAG	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	3 cut(s)	251, 1138, 1350
BccI	CCATC	3 cut(s)	824, 1188, 1808
BceAI	ACGGC	3 cut(s)	101, 124, 590
BciT130I	CCWGG	2 cut(s)	1709, 1791
BciVI	GTATCC	2 cut(s)	522, 1050
BclI	TGATCA	3 cut(s)	564, 759, 1432
BcnI	CCSGG	1 cut(s)	1619
BcoDI	GTCTC	3 cut(s)	348, 617, 876
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	2 cut(s)	627, 1608
BfmI	CTRYAG	2 cut(s)	892, 1262
BfoI	RGCGCY	1 cut(s)	606
BfuI	GTATCC	2 cut(s)	522, 1050
BglI	GCCNNNNNGGC	2 cut(s)	179, 611
BglII	AGATCT	1 cut(s)	1543
BisI	GCNGC	9 cut(s)	69, 159, 174, 265, 304, 380, 601, 1152, 1339
BlsI	GCNGC	9 cut(s)	70, 160, 175, 266, 305, 381, 602, 1153, 1340
BmcAI	AGTACT	1 cut(s)	494
Bme1390I	CCNGG	3 cut(s)	1619, 1709, 1791
Bme18I	GGWCC	3 cut(s)	135, 368, 907
BmgT120I	GGNCC	8 cut(s)	55, 70, 135, 193, 368, 803, 907, 1643
BmiI	GGNNCC	6 cut(s)	137, 604, 690, 805, 1087, 1848
BmrFI	CCNGG	3 cut(s)	1619, 1709, 1791
BmsI	GCATC	1 cut(s)	729
BpiI	GAAGAC	1 cut(s)	355
BpmI	CTGGAG	1 cut(s)	452
Bpu14I	TTCGAA	1 cut(s)	1415
BpuEI	CTTGAG	1 cut(s)	1745
BpuMI	CCSGG	1 cut(s)	1619
BsaAI	YACGTR	1 cut(s)	510
BsaHI	GRCGYC	2 cut(s)	603, 1095
BsaI	GGTCTC	1 cut(s)	348
BsaJI	CCNNGG	4 cut(s)	177, 531, 1051, 1790
BsaWI	WCCGGW	2 cut(s)	132, 1727
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	1368, 1764
Bse118I	RCCGGY	3 cut(s)	57, 299, 1727
Bse1I	ACTGG	1 cut(s)	1339
Bse3DI	GCAATG	1 cut(s)	822
BseBI	CCWGG	2 cut(s)	1709, 1791
BseDI	CCNNGG	4 cut(s)	177, 531, 1051, 1790
BseGI	GGATG	2 cut(s)	679, 1800
BseLI	CCNNNNNNNGG	2 cut(s)	1368, 1764
BseMI	GCAATG	1 cut(s)	822
BseMII	CTCAG	4 cut(s)	26, 176, 389, 1304
BseNI	ACTGG	1 cut(s)	1339
BseRI	GAGGAG	3 cut(s)	665, 749, 1219
BseX3I	CGGCCG	1 cut(s)	612
BseXI	GCAGC	3 cut(s)	251, 1138, 1350
Bsh1236I	CGCG	2 cut(s)	63, 68
Bsh1285I	CGRYCG	2 cut(s)	133, 615
BshNI	GGYRCC	1 cut(s)	602
BshTI	ACCGGT	1 cut(s)	1727
BsiEI	CGRYCG	2 cut(s)	133, 615
BsiHKAI	GWGCWC	1 cut(s)	41
BsiSI	CCGG	8 cut(s)	58, 133, 300, 349, 383, 1619, 1646, 1728
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	1368, 1764
BsmAI	GTCTC	3 cut(s)	348, 617, 876
BsmFI	GGGAC	1 cut(s)	242
Bso31I	GGTCTC	1 cut(s)	348
Bsp119I	TTCGAA	1 cut(s)	1415
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	8 cut(s)	258, 357, 504, 564, 759, 1432, 1543, 1846
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	9 cut(s)	68, 103, 151, 159, 174, 196, 303, 380, 600
BspCNI	CTCAG	4 cut(s)	27, 175, 388, 1303
BspFNI	CGCG	2 cut(s)	63, 68
BspLI	GGNNCC	6 cut(s)	137, 604, 690, 805, 1087, 1848
BspMAI	CTGCAG	1 cut(s)	896
BspPI	GGATC	2 cut(s)	1841, 1854
BspQI	GCTCTTC	1 cut(s)	590
BspT104I	TTCGAA	1 cut(s)	1415
BspT107I	GGYRCC	1 cut(s)	602
BspTNI	GGTCTC	1 cut(s)	348
BsrBI	CCGCTC	2 cut(s)	161, 600
BsrDI	GCAATG	1 cut(s)	822
BsrFI	RCCGGY	3 cut(s)	57, 299, 1727
BsrI	ACTGG	1 cut(s)	1339
BssAI	RCCGGY	3 cut(s)	57, 299, 1727
BssECI	CCNNGG	4 cut(s)	177, 531, 1051, 1790
BssMI	GATC	8 cut(s)	258, 357, 504, 564, 759, 1432, 1543, 1846
BssNI	GRCGYC	2 cut(s)	603, 1095
BssSI	CACGAG	1 cut(s)	392
BssT1I	CCWWGG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	392
Bst2UI	CCWGG	2 cut(s)	1709, 1791
Bst4CI	ACNGT	2 cut(s)	1208, 1476
Bst6I	CTCTTC	1 cut(s)	590
BstACI	GRCGYC	2 cut(s)	603, 1095
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstBAI	YACGTR	1 cut(s)	510
BstBI	TTCGAA	1 cut(s)	1415
BstC8I	GCNNGC	3 cut(s)	59, 196, 1278
BstDEI	CTNAG	7 cut(s)	35, 162, 375, 657, 882, 1290, 1673
BstDSI	CCRYGG	2 cut(s)	177, 1051
BstEII	GGTNACC	1 cut(s)	1723
BstF5I	GGATG	2 cut(s)	679, 1800
BstFNI	CGCG	2 cut(s)	63, 68
BstH2I	RGCGCY	1 cut(s)	606
BstHHI	GCGC	5 cut(s)	63, 297, 439, 605, 665
BstKTI	GATC	8 cut(s)	261, 360, 507, 567, 762, 1435, 1546, 1849
BstMAI	GTCTC	3 cut(s)	348, 617, 876
BstMBI	GATC	8 cut(s)	258, 357, 504, 564, 759, 1432, 1543, 1846
BstMCI	CGRYCG	2 cut(s)	133, 615
BstMWI	GCNNNNNNNGC	7 cut(s)	179, 303, 445, 611, 662, 748, 1286
BstNI	CCWGG	2 cut(s)	1709, 1791
BstNSI	RCATGY	1 cut(s)	484
BstPI	GGTNACC	1 cut(s)	1723
BstSCI	CCNGG	3 cut(s)	1617, 1707, 1789
BstSFI	CTRYAG	2 cut(s)	892, 1262
BstUI	CGCG	2 cut(s)	63, 68
BstV1I	GCAGC	3 cut(s)	251, 1138, 1350
BstV2I	GAAGAC	1 cut(s)	355
BstX2I	RGATCY	2 cut(s)	1543, 1846
BstYI	RGATCY	2 cut(s)	1543, 1846
BstZI	CGGCCG	1 cut(s)	612
BsuI	GTATCC	2 cut(s)	522, 1050
BtgI	CCRYGG	2 cut(s)	177, 1051
BtgZI	GCGATG	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	679, 1800
BtsI	GCAGTG	2 cut(s)	889, 901
BtsIMutI	CAGTG	2 cut(s)	889, 901
Cac8I	GCNNGC	3 cut(s)	59, 196, 1278
CaiI	CAGNNNCTG	2 cut(s)	1430, 1790
CfoI	GCGC	5 cut(s)	63, 297, 439, 605, 665
Cfr10I	RCCGGY	3 cut(s)	57, 299, 1727
Cfr13I	GGNCC	8 cut(s)	55, 70, 135, 193, 368, 803, 907, 1643
CpoI	CGGWCCG	1 cut(s)	368
CseI	GACGC	2 cut(s)	13, 52
Csp6I	GTAC	4 cut(s)	493, 547, 783, 927
CspAI	ACCGGT	1 cut(s)	1727
CspI	CGGWCCG	1 cut(s)	368
CviAII	CATG	8 cut(s)	112, 178, 202, 280, 481, 932, 1690, 1781
CviQI	GTAC	4 cut(s)	493, 547, 783, 927
DdeI	CTNAG	7 cut(s)	35, 162, 375, 657, 882, 1290, 1673
DinI	GGCGCC	1 cut(s)	604
DpnI	GATC	8 cut(s)	260, 359, 506, 566, 761, 1434, 1545, 1848
DpnII	GATC	8 cut(s)	258, 357, 504, 564, 759, 1432, 1543, 1846
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
EaeI	YGGCCR	5 cut(s)	97, 114, 180, 612, 1048
EagI	CGGCCG	1 cut(s)	612
Eam1104I	CTCTTC	1 cut(s)	590
EarI	CTCTTC	1 cut(s)	590
EclXI	CGGCCG	1 cut(s)	612
Eco130I	CCWWGG	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	348
Eco47I	GGWCC	3 cut(s)	135, 368, 907
Eco52I	CGGCCG	1 cut(s)	612
Eco57I	CTGAAG	3 cut(s)	569, 965, 1836
Eco91I	GGTNACC	1 cut(s)	1723
EcoO65I	GGTNACC	1 cut(s)	1723
EcoRI	GAATTC	2 cut(s)	698, 1294
EcoRII	CCWGG	2 cut(s)	1707, 1789
EcoT14I	CCWWGG	1 cut(s)	177
EgeI	GGCGCC	1 cut(s)	604
EheI	GGCGCC	1 cut(s)	604
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	8 cut(s)	115, 181, 205, 283, 484, 935, 1693, 1784
FalI	AAGNNNNNCTT	6 cut(s)	182, 214, 347, 379, 563, 595
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	8 cut(s)	111, 177, 201, 279, 480, 931, 1689, 1780
FauI	CCCGC	1 cut(s)	203
FauNDI	CATATG	1 cut(s)	1234
FbaI	TGATCA	3 cut(s)	564, 759, 1432
Fnu4HI	GCNGC	9 cut(s)	69, 159, 174, 265, 304, 380, 601, 1152, 1339
FokI	GGATG	2 cut(s)	686, 1807
Fsp4HI	GCNGC	9 cut(s)	69, 159, 174, 265, 304, 380, 601, 1152, 1339
FspBI	CTAG	2 cut(s)	627, 1608
GlaI	GCGC	5 cut(s)	62, 296, 438, 604, 664
GluI	GCNGC	9 cut(s)	69, 159, 174, 265, 304, 380, 601, 1152, 1339
GsuI	CTGGAG	1 cut(s)	452
HaeII	RGCGCY	1 cut(s)	606
HapII	CCGG	8 cut(s)	58, 133, 300, 349, 383, 1619, 1646, 1728
HgaI	GACGC	2 cut(s)	13, 52
HhaI	GCGC	5 cut(s)	63, 297, 439, 605, 665
Hin1I	GRCGYC	2 cut(s)	603, 1095
Hin1II	CATG	8 cut(s)	115, 181, 205, 283, 484, 935, 1693, 1784
Hin6I	GCGC	5 cut(s)	61, 295, 437, 603, 663
HinP1I	GCGC	5 cut(s)	61, 295, 437, 603, 663
HincII	GTYRAC	4 cut(s)	211, 837, 1135, 1501
HindII	GTYRAC	4 cut(s)	211, 837, 1135, 1501
HindIII	AAGCTT	2 cut(s)	29, 749
HpaII	CCGG	8 cut(s)	58, 133, 300, 349, 383, 1619, 1646, 1728
HphI	GGTGA	7 cut(s)	82, 304, 436, 559, 1672, 1717, 1742
Hpy188III	TCNNGA	4 cut(s)	25, 431, 845, 1811
Hpy99I	CGWCG	3 cut(s)	68, 242, 1031
HpyAV	CCTTC	9 cut(s)	103, 664, 940, 1108, 1411, 1577, 1679, 1714, 1860
HpyCH4III	ACNGT	2 cut(s)	1208, 1476
HpyCH4IV	ACGT	4 cut(s)	509, 575, 1095, 1503
HpyCH4V	TGCA	7 cut(s)	448, 538, 558, 894, 1280, 1447, 1784
HpyF10VI	GCNNNNNNNGC	7 cut(s)	179, 303, 445, 611, 662, 748, 1286
HpyF3I	CTNAG	7 cut(s)	35, 162, 375, 657, 882, 1290, 1673
HpySE526I	ACGT	4 cut(s)	509, 575, 1095, 1503
Hsp92I	GRCGYC	2 cut(s)	603, 1095
Hsp92II	CATG	8 cut(s)	115, 181, 205, 283, 484, 935, 1693, 1784
HspAI	GCGC	5 cut(s)	61, 295, 437, 603, 663
KasI	GGCGCC	1 cut(s)	602
KroI	GCCGGC	1 cut(s)	57
KroNI	GCCGGC	1 cut(s)	59
Ksp22I	TGATCA	3 cut(s)	564, 759, 1432
Kzo9I	GATC	8 cut(s)	258, 357, 504, 564, 759, 1432, 1543, 1846
LguI	GCTCTTC	1 cut(s)	590
LmnI	GCTCC	3 cut(s)	12, 1055, 1745
Lsp1109I	GCAGC	3 cut(s)	251, 1138, 1350
LweI	GCATC	1 cut(s)	729
MaeI	CTAG	2 cut(s)	627, 1608
MaeII	ACGT	4 cut(s)	509, 575, 1095, 1503
MaeIII	GTNAC	5 cut(s)	320, 1005, 1216, 1723, 1771
MalI	GATC	8 cut(s)	260, 359, 506, 566, 761, 1434, 1545, 1848
MbiI	CCGCTC	2 cut(s)	161, 600
MboI	GATC	8 cut(s)	258, 357, 504, 564, 759, 1432, 1543, 1846
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	2 cut(s)	1543, 1846
MhlI	GDGCHC	1 cut(s)	41
MlsI	TGGCCA	1 cut(s)	1050
MluNI	TGGCCA	1 cut(s)	1050
Mly113I	GGCGCC	1 cut(s)	603
MlyI	GAGTC	7 cut(s)	119, 367, 398, 467, 878, 1130, 1436
MmeI	TCCRAC	1 cut(s)	153
Mox20I	TGGCCA	1 cut(s)	1050
MroNI	GCCGGC	1 cut(s)	57
MroXI	GAANNNNTTC	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	1050
MseI	TTAA	6 cut(s)	851, 858, 993, 1365, 1683, 1842
MslI	CAYNNNNRTG	1 cut(s)	894
Msp20I	TGGCCA	1 cut(s)	1050
MspI	CCGG	8 cut(s)	58, 133, 300, 349, 383, 1619, 1646, 1728
MspR9I	CCNGG	3 cut(s)	1619, 1709, 1791
MunI	CAATTG	1 cut(s)	456
MvaI	CCWGG	2 cut(s)	1709, 1791
MvnI	CGCG	2 cut(s)	63, 68
MwoI	GCNNNNNNNGC	7 cut(s)	179, 303, 445, 611, 662, 748, 1286
NaeI	GCCGGC	1 cut(s)	59
NarI	GGCGCC	1 cut(s)	603
NciI	CCSGG	1 cut(s)	1619
NcoI	CCATGG	1 cut(s)	177
NdeI	CATATG	1 cut(s)	1234
NdeII	GATC	8 cut(s)	258, 357, 504, 564, 759, 1432, 1543, 1846
NgoMIV	GCCGGC	1 cut(s)	57
NlaIII	CATG	8 cut(s)	115, 181, 205, 283, 484, 935, 1693, 1784
NlaIV	GGNNCC	6 cut(s)	137, 604, 690, 805, 1087, 1848
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	4 cut(s)	320, 1005, 1216, 1723
NspI	RCATGY	1 cut(s)	484
NspV	TTCGAA	1 cut(s)	1415
OliI	CACNNNNGTG	1 cut(s)	894
PciSI	GCTCTTC	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	3 cut(s)	114, 237, 399
PdiI	GCCGGC	1 cut(s)	59
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	5 cut(s)	427, 451, 517, 795, 1238
PinAI	ACCGGT	1 cut(s)	1727
PkrI	GCNGC	9 cut(s)	70, 160, 175, 266, 305, 381, 602, 1153, 1340
PleI	GAGTC	7 cut(s)	119, 367, 398, 467, 877, 1130, 1435
PluTI	GGCGCC	1 cut(s)	606
PpsI	GAGTC	7 cut(s)	119, 367, 398, 467, 877, 1130, 1435
Ppu21I	YACGTR	1 cut(s)	510
Psp1406I	AACGTT	1 cut(s)	1503
Psp6I	CCWGG	2 cut(s)	1707, 1789
PspEI	GGTNACC	1 cut(s)	1723
PspGI	CCWGG	2 cut(s)	1707, 1789
PspN4I	GGNNCC	6 cut(s)	137, 604, 690, 805, 1087, 1848
PspPI	GGNCC	8 cut(s)	55, 70, 135, 193, 368, 803, 907, 1643
PstI	CTGCAG	1 cut(s)	896
PstNI	CAGNNNCTG	2 cut(s)	1430, 1790
PsuI	RGATCY	2 cut(s)	1543, 1846
RsaI	GTAC	4 cut(s)	494, 548, 784, 928
RsaNI	GTAC	4 cut(s)	493, 547, 783, 927
RseI	CAYNNNNRTG	1 cut(s)	894
Rsr2I	CGGWCCG	1 cut(s)	368
RsrII	CGGWCCG	1 cut(s)	368
SapI	GCTCTTC	1 cut(s)	590
SaqAI	TTAA	6 cut(s)	851, 858, 993, 1365, 1683, 1842
SatI	GCNGC	9 cut(s)	69, 159, 174, 265, 304, 380, 601, 1152, 1339
Sau3AI	GATC	8 cut(s)	258, 357, 504, 564, 759, 1432, 1543, 1846
Sau96I	GGNCC	8 cut(s)	55, 70, 135, 193, 368, 803, 907, 1643
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	7 cut(s)	119, 367, 398, 467, 878, 1130, 1436
ScrFI	CCNGG	3 cut(s)	1619, 1709, 1791
SduI	GDGCHC	1 cut(s)	41
SfaNI	GCATC	1 cut(s)	729
SfcI	CTRYAG	2 cut(s)	892, 1262
SfoI	GGCGCC	1 cut(s)	604
SfuI	TTCGAA	1 cut(s)	1415
SgrAI	CRCCGGYG	2 cut(s)	299, 1727
SinI	GGWCC	3 cut(s)	135, 368, 907
SmiMI	CAYNNNNRTG	1 cut(s)	894
SmlI	CTYRAG	1 cut(s)	1760
SmoI	CTYRAG	1 cut(s)	1760
SpeI	ACTAGT	1 cut(s)	626
SsiI	CCGC	9 cut(s)	68, 103, 151, 159, 174, 196, 303, 380, 600
SspDI	GGCGCC	1 cut(s)	602
SspI	AATATT	1 cut(s)	962
SspMI	CTAG	2 cut(s)	627, 1608
StyD4I	CCNGG	3 cut(s)	1617, 1707, 1789
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	1208, 1476
TaiI	ACGT	4 cut(s)	512, 578, 1098, 1506
TaqI	TCGA	5 cut(s)	123, 240, 402, 1329, 1415
TaqII	GACCGA	1 cut(s)	385
TatI	WGTACW	2 cut(s)	492, 926
TauI	GCSGC	6 cut(s)	71, 161, 176, 306, 382, 603
TfiI	GAWTC	5 cut(s)	427, 451, 517, 795, 1238
Tru1I	TTAA	6 cut(s)	851, 858, 993, 1365, 1683, 1842
Tru9I	TTAA	6 cut(s)	851, 858, 993, 1365, 1683, 1842
TscAI	CASTG	2 cut(s)	896, 901
TseFI	GTSAC	4 cut(s)	320, 1005, 1216, 1723
TseI	GCWGC	3 cut(s)	264, 1151, 1338
Tsp45I	GTSAC	4 cut(s)	320, 1005, 1216, 1723
TspGWI	ACGGA	3 cut(s)	510, 1068, 1288
TspRI	CASTG	2 cut(s)	896, 901
VpaK11BI	GGWCC	3 cut(s)	135, 368, 907
XapI	RAATTY	7 cut(s)	698, 822, 1170, 1294, 1316, 1649, 1806
XceI	RCATGY	1 cut(s)	484
XcmI	CCANNNNNNNNNTGG	2 cut(s)	49, 814
XmnI	GAANNNNTTC	1 cut(s)	335
XspI	CTAG	2 cut(s)	627, 1608
ZraI	GACGTC	1 cut(s)	1096
ZrmI	AGTACT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.