Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001898

Physical Location & Seq

Genomic Coordinates Reverse (-)

25256617 .. 25257166

Gene Structure 550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG240800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCCGAGAACAAGGCCCGCTTCATGTTCATCAACACCAACTCCCTCTGGGACGAAATCGTCAAACAAATGACCAAGAAGATCGGCTGCTACTCTCCCTCCATGAACACTCTCTGGCGCACCGACGGCTTCCTCACCAATAGTCACTGCCCTAAGAAGTTCAGGTCTCGCCGGAAGAAGATCGTCTTCGGACTGACTCAGCCACCGGACTGCCTCGTGGTTTTCGACTCTGAGAGGAAGTCGTCGGTGATTCTCGAGGCGCATAGGTTGCAGATTCCAATTGGTTCGTTTGTGGACTCGGACATGCCTATCGAGTACTACAACAAGATCACAAGAAGAGCGGCGCCGTTTCGGCCGAAATTGAGACTAGTGAGCGAGTGGGGGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

129

Amino Acids

15.07

Weight (kDa)

9.91

Isoelectric Point (pI)

59.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03600
fragaria_vesca	FvH4_7g08140
malus_domestica	MD02G1230600.v1.1
prunus_persica	Prupe.2G107500_v2.0.a1
pyrus_communis	pycom02g19970 pycom07g06540
rosa_chinensis	RchiOBHm_Chr1g0341081 RchiOBHm_Chr1g0363821 RchiOBHm_Chr1g0383121 RchiOBHm_Chr2g0085551 RchiOBHm_Chr3g0481141 RchiOBHm_Chr5g0027611 RchiOBHm_Chr5g0054321 RchiOBHm_Chr6g0246101
rosa_laevigata	RLG00000003952 RLG00000006546 RLG00000013359 RLG00000020654 RLG00000029063
rosa_multiflora	Rmu_sc0000533.1_g000047 Rmu_sc0000821.1_g000002 Rmu_sc0001211.1_g000068 Rmu_sc0002200.1_g000002 Rmu_sc0004332.1_g000001 Rmu_sc0004577.1_g000014 Rmu_sc0008563.1_g000010 Rmu_sc0012351.1_g000004 Rmu_ssc0000190.1_g000008
rosa_roxburghii	Rroxscaffold_1G00011600 Rroxscaffold_4G00311710
rosa_rugosa	Rorug01G0160000.1 Rorug05G0092000
rosa_samantha	Rh1AG174300 Rh1BG142600 Rh1BG221400 Rh1CG162100 Rh1CG365900 Rh1DG174200 Rh1DG248400 Rh1DG383600 Rh3AG240800 Rh5AG444100 Rh5DG194400
rosa_wichuraiana	Rw1G014550 Rw4G015450 Rw5G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	343
AccBSI	CCGCTC	1 cut(s)	341
AciI	CCGC	2 cut(s)	19, 341
AcoI	YGGCCR	2 cut(s)	3, 353
AcyI	GRCGYC	1 cut(s)	344
AfaI	GTAC	1 cut(s)	317
AhlI	ACTAGT	1 cut(s)	367
Alw26I	GTCTC	2 cut(s)	171, 358
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	3 cut(s)	3, 15, 353
ApeKI	GCWGC	1 cut(s)	87
AspLEI	GCGC	3 cut(s)	120, 262, 346
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	127, 259
AvaI	CYCGRG	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	343
BauI	CACGAG	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	74
BceAI	ACGGC	2 cut(s)	142, 331
BcoDI	GTCTC	2 cut(s)	171, 358
BcuI	ACTAGT	1 cut(s)	367
BfaI	CTAG	1 cut(s)	368
BfoI	RGCGCY	1 cut(s)	347
BglI	GCCNNNNNGGC	1 cut(s)	352
BisI	GCNGC	2 cut(s)	88, 342
BlsI	GCNGC	2 cut(s)	89, 343
BmcAI	AGTACT	1 cut(s)	317
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	178
BsaHI	GRCGYC	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	171
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 83, 113
BseMII	CTCAG	2 cut(s)	212, 222
BseX3I	CGGCCG	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	356
BshFI	GGCC	3 cut(s)	5, 17, 355
BshNI	GGYRCC	1 cut(s)	343
BsiEI	CGRYCG	1 cut(s)	356
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	2 cut(s)	172, 206
BslFI	GGGAC	1 cut(s)	65
BsmAI	GTCTC	2 cut(s)	171, 358
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	3 cut(s)	5, 17, 355
Bso31I	GGTCTC	1 cut(s)	171
BsoBI	CYCGRG	1 cut(s)	254
Bsp143I	GATC	3 cut(s)	81, 180, 327
BspACI	CCGC	2 cut(s)	19, 341
BspANI	GGCC	3 cut(s)	5, 17, 355
BspCNI	CTCAG	2 cut(s)	211, 223
BspLI	GGNNCC	1 cut(s)	345
BspQI	GCTCTTC	1 cut(s)	331
BspT107I	GGYRCC	1 cut(s)	343
BspTNI	GGTCTC	1 cut(s)	171
BsrBI	CCGCTC	1 cut(s)	341
BssMI	GATC	3 cut(s)	81, 180, 327
BssNI	GRCGYC	1 cut(s)	344
BssSI	CACGAG	1 cut(s)	215
Bst2BI	CACGAG	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	331
BstACI	GRCGYC	1 cut(s)	344
BstAPI	GCANNNNNTGC	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	3 cut(s)	153, 198, 231
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	3 cut(s)	120, 262, 346
BstKTI	GATC	3 cut(s)	84, 183, 330
BstMAI	GTCTC	2 cut(s)	171, 358
BstMBI	GATC	3 cut(s)	81, 180, 327
BstMCI	CGRYCG	1 cut(s)	356
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 268, 352
BstNSI	RCATGY	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	74
BstV2I	GAAGAC	1 cut(s)	178
BstZI	CGGCCG	1 cut(s)	353
BsuRI	GGCC	3 cut(s)	5, 17, 355
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	3 cut(s)	120, 262, 346
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	3 cut(s)	25, 103, 304
CviJI	RGCY	6 cut(s)	5, 17, 87, 129, 202, 355
CviKI_1	RGCY	6 cut(s)	5, 17, 87, 129, 202, 355
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	3 cut(s)	153, 198, 231
DinI	GGCGCC	1 cut(s)	345
DpnI	GATC	3 cut(s)	83, 182, 329
DpnII	GATC	3 cut(s)	81, 180, 327
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
EaeI	YGGCCR	2 cut(s)	3, 353
EagI	CGGCCG	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	331
EclXI	CGGCCG	1 cut(s)	353
Eco31I	GGTCTC	1 cut(s)	171
Eco52I	CGGCCG	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	254
EgeI	GGCGCC	1 cut(s)	345
EheI	GGCGCC	1 cut(s)	345
FaeI	CATG	3 cut(s)	28, 106, 307
FaiI	YATR	5 cut(s)	26, 104, 264, 305, 388
FalI	AAGNNNNNCTT	3 cut(s)	37, 170, 202
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	3 cut(s)	24, 102, 303
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	2 cut(s)	88, 342
Fsp4HI	GCNGC	2 cut(s)	88, 342
FspBI	CTAG	1 cut(s)	368
GlaI	GCGC	3 cut(s)	119, 261, 345
GluI	GCNGC	2 cut(s)	88, 342
HaeII	RGCGCY	1 cut(s)	347
HaeIII	GGCC	3 cut(s)	5, 17, 355
HapII	CCGG	2 cut(s)	172, 206
HhaI	GCGC	3 cut(s)	120, 262, 346
Hin1I	GRCGYC	1 cut(s)	344
Hin1II	CATG	3 cut(s)	28, 106, 307
Hin6I	GCGC	3 cut(s)	118, 260, 344
HinP1I	GCGC	3 cut(s)	118, 260, 344
HinfI	GANTC	5 cut(s)	196, 227, 250, 274, 296
HpaII	CCGG	2 cut(s)	172, 206
HphI	GGTGA	2 cut(s)	127, 259
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	3 cut(s)	191, 232, 301
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	2 cut(s)	128, 247
HpyCH4V	TGCA	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 268, 352
HpyF3I	CTNAG	3 cut(s)	153, 198, 231
Hsp92I	GRCGYC	1 cut(s)	344
Hsp92II	CATG	3 cut(s)	28, 106, 307
HspAI	GCGC	3 cut(s)	118, 260, 344
KasI	GGCGCC	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	81, 180, 327
LguI	GCTCTTC	1 cut(s)	331
LpnPI	CCDG	5 cut(s)	34, 100, 148, 185, 219
Lsp1109I	GCAGC	1 cut(s)	74
MaeI	CTAG	1 cut(s)	368
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	3 cut(s)	83, 182, 329
MbiI	CCGCTC	1 cut(s)	341
MboI	GATC	3 cut(s)	81, 180, 327
MboII	GAAGA	5 cut(s)	91, 178, 187, 190, 348
MfeI	CAATTG	1 cut(s)	279
MluCI	AATT	2 cut(s)	279, 359
Mly113I	GGCGCC	1 cut(s)	344
MlyI	GAGTC	3 cut(s)	190, 221, 290
MnlI	CCTC	6 cut(s)	56, 109, 143, 224, 228, 250
MspI	CCGG	2 cut(s)	172, 206
MunI	CAATTG	1 cut(s)	279
MwoI	GCNNNNNNNGC	3 cut(s)	126, 268, 352
NarI	GGCGCC	1 cut(s)	344
NdeII	GATC	3 cut(s)	81, 180, 327
NlaIII	CATG	3 cut(s)	28, 106, 307
NlaIV	GGNNCC	1 cut(s)	345
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	307
PaeR7I	CTCGAG	1 cut(s)	254
PciSI	GCTCTTC	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	250, 274
PkrI	GCNGC	2 cut(s)	89, 343
PleI	GAGTC	3 cut(s)	190, 221, 290
PluTI	GGCGCC	1 cut(s)	347
PpsI	GAGTC	3 cut(s)	190, 221, 290
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	16
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SapI	GCTCTTC	1 cut(s)	331
SatI	GCNGC	2 cut(s)	88, 342
Sau3AI	GATC	3 cut(s)	81, 180, 327
Sau96I	GGNCC	1 cut(s)	16
ScaI	AGTACT	1 cut(s)	317
SchI	GAGTC	3 cut(s)	190, 221, 290
SetI	ASST	2 cut(s)	167, 269
SfoI	GGCGCC	1 cut(s)	345
Sfr274I	CTCGAG	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SpeI	ACTAGT	1 cut(s)	367
Sse9I	AATT	2 cut(s)	279, 359
SsiI	CCGC	2 cut(s)	19, 341
SspDI	GGCGCC	1 cut(s)	343
SspMI	CTAG	1 cut(s)	368
TaqI	TCGA	3 cut(s)	225, 255, 312
TasI	AATT	2 cut(s)	279, 359
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	250, 274
TscAI	CASTG	1 cut(s)	152
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	87
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	3 cut(s)	13, 19, 119
TspRI	CASTG	1 cut(s)	152
XceI	RCATGY	1 cut(s)	307
XhoI	CTCGAG	1 cut(s)	254
XspI	CTAG	1 cut(s)	368
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.