Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001898

Physical Location & Seq

Genomic Coordinates Reverse (-)

35522261 .. 35522833

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G015450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGTCGAGGCTGAGCTCTCTGAGGTCTGCGCTAACATCCTGAGGATTCGTCTGATTTTCATCGCCGCCATGGCCGAGAACAAGGCCCGCTTCATGTTCGTCAACACCAACTCCCTCTGCGACGAAATCGTCGAACAAATGACCAAGAAGATCGGCTGCTACTCTCCCTCCATGAACACTCTTTGGTGCACCGGCGGCTTCCTCACTAATAGTCACAGCCCTAAGAAGTTCAGGTCTTGCCGGAAGAAGATCATCTTCGGACCGACTCAGCCGCCGGACTGCCTTGTGGTTTTCAACTCCAAGAGGAAGTCGTCAGTGATTCTCGAGGAGCATAGGTTGCAGATTCCGATTGTTTCGCTTGTGGACTCGGACATGCCTATCGAGTACTACAACAAGATCACGTATCTGATTCCGTGTAATTCCTCGGTGCAATTTGTGTACCTGTTCTGCAATTTGATCACCAAGACGTTCATGCTTCAGCAGAAGAAAAGCGGCGCCGATTCGGCTGAAATTGAGACTAGGTGTGTTGGTGTTTTTGGTGCGCACCAGGTGTTTGATGTTTTGATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

190

Amino Acids

21.57

Weight (kDa)

8.35

Isoelectric Point (pI)

51.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	89 - 156	7.2e-09	Ribosomal protein S2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03600
fragaria_vesca	FvH4_7g08140
malus_domestica	MD02G1230600.v1.1
prunus_persica	Prupe.2G107500_v2.0.a1
pyrus_communis	pycom02g19970 pycom07g06540
rosa_chinensis	RchiOBHm_Chr1g0341081 RchiOBHm_Chr1g0363821 RchiOBHm_Chr1g0383121 RchiOBHm_Chr2g0085551 RchiOBHm_Chr3g0481141 RchiOBHm_Chr5g0027611 RchiOBHm_Chr5g0054321 RchiOBHm_Chr6g0246101
rosa_laevigata	RLG00000003952 RLG00000006546 RLG00000013359 RLG00000020654 RLG00000029063
rosa_multiflora	Rmu_sc0000533.1_g000047 Rmu_sc0000821.1_g000002 Rmu_sc0001211.1_g000068 Rmu_sc0002200.1_g000002 Rmu_sc0004332.1_g000001 Rmu_sc0004577.1_g000014 Rmu_sc0008563.1_g000010 Rmu_sc0012351.1_g000004 Rmu_ssc0000190.1_g000008
rosa_roxburghii	Rroxscaffold_1G00011600 Rroxscaffold_4G00311710
rosa_rugosa	Rorug01G0160000.1 Rorug05G0092000
rosa_samantha	Rh1AG174300 Rh1BG142600 Rh1BG221400 Rh1CG162100 Rh1CG365900 Rh1DG174200 Rh1DG248400 Rh1DG383600 Rh3AG240800 Rh5AG444100 Rh5DG194400
rosa_wichuraiana	Rw1G014550 Rw4G015450 Rw5G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
Acc16I	TGCGCA	1 cut(s)	543
AccB1I	GGYRCC	1 cut(s)	494
AciI	CCGC	5 cut(s)	66, 88, 195, 272, 492
AcoI	YGGCCR	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	461
AcyI	GRCGYC	1 cut(s)	495
AdeI	CACNNNGTG	1 cut(s)	550
AfaI	GTAC	2 cut(s)	386, 440
AgsI	TTSAA	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	546
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
Alw21I	GWGCWC	2 cut(s)	18, 191
Alw26I	GTCTC	1 cut(s)	509
Alw44I	GTGCAC	1 cut(s)	187
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	2 cut(s)	72, 84
ApaLI	GTGCAC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	156
AspLEI	GCGC	3 cut(s)	32, 497, 544
AspS9I	GGNCC	2 cut(s)	85, 260
AsuHPI	GGTGA	1 cut(s)	451
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	260
AxyI	CCTNAGG	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	18
Bbv12I	GWGCWC	2 cut(s)	18, 191
BbvI	GCAGC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	548
BclI	TGATCA	1 cut(s)	456
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	1 cut(s)	519
BfoI	RGCGCY	1 cut(s)	498
BglI	GCCNNNNNGGC	2 cut(s)	71, 503
BisI	GCNGC	5 cut(s)	66, 157, 196, 272, 493
BlpI	GCTNAGC	1 cut(s)	12
BlsI	GCNGC	5 cut(s)	67, 158, 197, 273, 494
BmcAI	AGTACT	1 cut(s)	386
Bme1390I	CCNGG	1 cut(s)	548
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	2 cut(s)	85, 260
BmiI	GGNNCC	1 cut(s)	496
BmrFI	CCNGG	1 cut(s)	548
Bpu1102I	GCTNAGC	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	402
BsaBI	GATNNNNATC	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	495
BsaJI	CCNNGG	2 cut(s)	69, 423
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 152, 182, 320, 350
Bse118I	RCCGGY	1 cut(s)	191
Bse21I	CCTNAGG	1 cut(s)	41
Bse8I	GATNNNNATC	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	2 cut(s)	69, 423
BseGI	GGATG	1 cut(s)	36
BseJI	GATNNNNATC	1 cut(s)	59
BseMII	CTCAG	3 cut(s)	12, 32, 281
BseRI	GAGGAG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	143
BshFI	GGCC	2 cut(s)	74, 86
BshNI	GGYRCC	1 cut(s)	494
BsiHKAI	GWGCWC	2 cut(s)	18, 191
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	3 cut(s)	192, 241, 275
BsmAI	GTCTC	1 cut(s)	509
BsnI	GGCC	2 cut(s)	74, 86
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	2 cut(s)	18, 191
Bsp143I	GATC	4 cut(s)	150, 249, 396, 456
Bsp1720I	GCTNAGC	1 cut(s)	12
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	5 cut(s)	66, 88, 195, 272, 492
BspANI	GGCC	2 cut(s)	74, 86
BspCNI	CTCAG	4 cut(s)	4, 13, 33, 280
BspLI	GGNNCC	1 cut(s)	496
BspT107I	GGYRCC	1 cut(s)	494
BsrFI	RCCGGY	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	69, 423
BssMI	GATC	4 cut(s)	150, 249, 396, 456
BssNI	GRCGYC	1 cut(s)	495
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	548
BstACI	GRCGYC	1 cut(s)	495
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstBAI	YACGTR	1 cut(s)	402
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	5 cut(s)	12, 21, 41, 222, 267
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	36
BstH2I	RGCGCY	1 cut(s)	498
BstHHI	GCGC	3 cut(s)	32, 497, 544
BstKTI	GATC	4 cut(s)	153, 252, 399, 459
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	4 cut(s)	150, 249, 396, 456
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 195, 337, 503
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	546
BstSLI	GKGCMC	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	143
Bsu36I	CCTNAGG	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	74, 86
BtgI	CCRYGG	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	1 cut(s)	88
CfoI	GCGC	3 cut(s)	32, 497, 544
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	85, 260
CpoI	CGGWCCG	1 cut(s)	260
CsiI	ACCWGGT	1 cut(s)	546
Csp6I	GTAC	2 cut(s)	385, 439
CspI	CGGWCCG	1 cut(s)	260
CviAII	CATG	5 cut(s)	70, 94, 172, 373, 472
CviJI	RGCY	9 cut(s)	11, 16, 74, 86, 156, 198, 219, 271, 506
CviKI_1	RGCY	9 cut(s)	11, 16, 74, 86, 156, 198, 219, 271, 506
CviQI	GTAC	2 cut(s)	385, 439
DdeI	CTNAG	5 cut(s)	12, 21, 41, 222, 267
DinI	GGCGCC	1 cut(s)	496
DpnI	GATC	4 cut(s)	152, 251, 398, 458
DpnII	GATC	4 cut(s)	150, 249, 396, 456
DraIII	CACNNNGTG	1 cut(s)	550
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	461
Eco81I	CCTNAGG	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	18
EgeI	GGCGCC	1 cut(s)	496
EheI	GGCGCC	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	5 cut(s)	73, 97, 175, 376, 475
FaiI	YATR	6 cut(s)	71, 95, 173, 333, 374, 473
FalI	AAGNNNNNCTT	4 cut(s)	74, 106, 239, 271
FatI	CATG	5 cut(s)	69, 93, 171, 372, 471
FauI	CCCGC	1 cut(s)	95
FbaI	TGATCA	1 cut(s)	456
Fnu4HI	GCNGC	5 cut(s)	66, 157, 196, 272, 493
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	5 cut(s)	66, 157, 196, 272, 493
FspAI	RTGCGCAY	1 cut(s)	543
FspBI	CTAG	1 cut(s)	519
FspI	TGCGCA	1 cut(s)	543
GlaI	GCGC	3 cut(s)	31, 496, 543
GluI	GCNGC	5 cut(s)	66, 157, 196, 272, 493
HaeII	RGCGCY	1 cut(s)	498
HaeIII	GGCC	2 cut(s)	74, 86
HapII	CCGG	3 cut(s)	192, 241, 275
HhaI	GCGC	3 cut(s)	32, 497, 544
Hin1I	GRCGYC	1 cut(s)	495
Hin1II	CATG	5 cut(s)	73, 97, 175, 376, 475
Hin6I	GCGC	3 cut(s)	30, 495, 542
HinP1I	GCGC	3 cut(s)	30, 495, 542
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	7 cut(s)	46, 265, 319, 343, 365, 409, 500
HpaII	CCGG	3 cut(s)	192, 241, 275
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	4 cut(s)	103, 189, 364, 439
Hpy188I	TCNGA	6 cut(s)	22, 54, 260, 348, 370, 408
Hpy188III	TCNNGA	2 cut(s)	40, 323
Hpy8I	GTNNAC	4 cut(s)	103, 189, 364, 439
Hpy99I	CGWCG	2 cut(s)	125, 134
HpyCH4IV	ACGT	2 cut(s)	401, 467
HpyCH4V	TGCA	4 cut(s)	189, 340, 430, 450
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 195, 337, 503
HpyF3I	CTNAG	5 cut(s)	12, 21, 41, 222, 267
HpySE526I	ACGT	2 cut(s)	401, 467
Hsp92I	GRCGYC	1 cut(s)	495
Hsp92II	CATG	5 cut(s)	73, 97, 175, 376, 475
HspAI	GCGC	3 cut(s)	30, 495, 542
KasI	GGCGCC	1 cut(s)	494
Ksp22I	TGATCA	1 cut(s)	456
Kzo9I	GATC	4 cut(s)	150, 249, 396, 456
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	8 cut(s)	53, 205, 217, 254, 288, 455, 533, 560
Lsp1109I	GCAGC	1 cut(s)	143
MabI	ACCWGGT	1 cut(s)	546
MaeI	CTAG	1 cut(s)	519
MaeII	ACGT	2 cut(s)	401, 467
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	4 cut(s)	152, 251, 398, 458
MboI	GATC	4 cut(s)	150, 249, 396, 456
MboII	GAAGA	5 cut(s)	160, 247, 256, 259, 496
MhlI	GDGCHC	2 cut(s)	18, 191
MluCI	AATT	4 cut(s)	418, 431, 451, 510
Mly113I	GGCGCC	1 cut(s)	495
MlyI	GAGTC	2 cut(s)	259, 359
MnlI	CCTC	8 cut(s)	16, 36, 125, 178, 212, 297, 319, 433
MspI	CCGG	3 cut(s)	192, 241, 275
MspR9I	CCNGG	1 cut(s)	548
MvaI	CCWGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	4 cut(s)	71, 195, 337, 503
NarI	GGCGCC	1 cut(s)	495
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	4 cut(s)	150, 249, 396, 456
NlaIII	CATG	5 cut(s)	73, 97, 175, 376, 475
NlaIV	GGNNCC	1 cut(s)	496
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	212
NsbI	TGCGCA	1 cut(s)	543
NspI	RCATGY	1 cut(s)	376
PaeR7I	CTCGAG	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	5 cut(s)	46, 319, 343, 409, 500
PkrI	GCNGC	5 cut(s)	67, 158, 197, 273, 494
PleI	GAGTC	2 cut(s)	259, 359
PluTI	GGCGCC	1 cut(s)	498
PpsI	GAGTC	2 cut(s)	259, 359
Ppu21I	YACGTR	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	496
PspPI	GGNCC	2 cut(s)	85, 260
RsaI	GTAC	2 cut(s)	386, 440
RsaNI	GTAC	2 cut(s)	385, 439
Rsr2I	CGGWCCG	1 cut(s)	260
RsrII	CGGWCCG	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	18
SatI	GCNGC	5 cut(s)	66, 157, 196, 272, 493
Sau3AI	GATC	4 cut(s)	150, 249, 396, 456
Sau96I	GGNCC	2 cut(s)	85, 260
ScaI	AGTACT	1 cut(s)	386
SchI	GAGTC	2 cut(s)	259, 359
ScrFI	CCNGG	1 cut(s)	548
SduI	GDGCHC	2 cut(s)	18, 191
SetI	ASST	9 cut(s)	18, 27, 236, 338, 404, 444, 470, 524, 552
SexAI	ACCWGGT	1 cut(s)	546
SfoI	GGCGCC	1 cut(s)	496
Sfr274I	CTCGAG	1 cut(s)	323
SgrAI	CRCCGGYG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	4 cut(s)	418, 431, 451, 510
SsiI	CCGC	5 cut(s)	66, 88, 195, 272, 492
SspDI	GGCGCC	1 cut(s)	494
SspMI	CTAG	1 cut(s)	519
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	546
StyI	CCWWGG	1 cut(s)	69
TaiI	ACGT	2 cut(s)	404, 470
TaqI	TCGA	4 cut(s)	6, 132, 324, 381
TaqII	GACCGA	1 cut(s)	277
TasI	AATT	4 cut(s)	418, 431, 451, 510
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	4 cut(s)	68, 198, 274, 495
TfiI	GAWTC	5 cut(s)	46, 319, 343, 409, 500
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	1 cut(s)	156
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	4 cut(s)	49, 82, 188, 460
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	321
VneI	GTGCAC	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	260
XceI	RCATGY	1 cut(s)	376
XhoI	CTCGAG	1 cut(s)	323
XspI	CTAG	1 cut(s)	519
ZrmI	AGTACT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.