Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001898

Physical Location & Seq

Genomic Coordinates Forward (+)

30328473 .. 30329081

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013359

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCCGACAACAAGGCCTGCTTCATGTTCGTCAACACCAACTCCCTCTGGGACGAAATCGTCGAACAAATGACCAAGAAGATCTGCTGCTACTCTCCCTCCATGAACACCCTCTGGCGCACCGGCGGCTTTCTCACCAATAGTCACAGCCCTAAAAAGTTCAGGTCTCGCCTGAAGAAGATCGTCTTCGGACCAACTCAGCTGCCGGACTACCTTGTGGTTTTCAACTCCGAGAGGAAGTCGTCGGTGATTCTCAAGGCGCATAGGTTGCAGATTCCGATTGTTTCGCTTGTGGACTCGAACATGCCTATCGAGTACTACAACAAGATCACTGAGCGAGTGGGGGTTATAAAGGAGGCTAAGAGCGCAAAGAAGGATGAGGTGCTTGTGGTTCAATCAATTAAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

137

Amino Acids

15.55

Weight (kDa)

9.62

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03600
fragaria_vesca	FvH4_7g08140
malus_domestica	MD02G1230600.v1.1
prunus_persica	Prupe.2G107500_v2.0.a1
pyrus_communis	pycom02g19970 pycom07g06540
rosa_chinensis	RchiOBHm_Chr1g0341081 RchiOBHm_Chr1g0363821 RchiOBHm_Chr1g0383121 RchiOBHm_Chr2g0085551 RchiOBHm_Chr3g0481141 RchiOBHm_Chr5g0027611 RchiOBHm_Chr5g0054321 RchiOBHm_Chr6g0246101
rosa_laevigata	RLG00000003952 RLG00000006546 RLG00000013359 RLG00000020654 RLG00000029063
rosa_multiflora	Rmu_sc0000533.1_g000047 Rmu_sc0000821.1_g000002 Rmu_sc0001211.1_g000068 Rmu_sc0002200.1_g000002 Rmu_sc0004332.1_g000001 Rmu_sc0004577.1_g000014 Rmu_sc0008563.1_g000010 Rmu_sc0012351.1_g000004 Rmu_ssc0000190.1_g000008
rosa_roxburghii	Rroxscaffold_1G00011600 Rroxscaffold_4G00311710
rosa_rugosa	Rorug01G0160000.1 Rorug05G0092000
rosa_samantha	Rh1AG174300 Rh1BG142600 Rh1BG221400 Rh1CG162100 Rh1CG365900 Rh1DG174200 Rh1DG248400 Rh1DG383600 Rh3AG240800 Rh5AG444100 Rh5DG194400
rosa_wichuraiana	Rw1G014550 Rw4G015450 Rw5G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	350
AasI	GACNNNNNNGTC	1 cut(s)	59
AciI	CCGC	1 cut(s)	126
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	194
AfaI	GTAC	1 cut(s)	317
AgsI	TTSAA	2 cut(s)	226, 395
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	171
AoxI	GGCC	2 cut(s)	3, 15
ApeKI	GCWGC	2 cut(s)	87, 202
AspLEI	GCGC	3 cut(s)	120, 262, 368
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	127, 259
AvaII	GGWCC	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	178
BbvI	GCAGC	2 cut(s)	74, 189
BcoDI	GTCTC	1 cut(s)	171
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	3 cut(s)	88, 127, 203
BlsI	GCNGC	3 cut(s)	89, 128, 204
BmcAI	AGTACT	1 cut(s)	317
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	171
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 83, 113
Bse118I	RCCGGY	1 cut(s)	122
BseGI	GGATG	1 cut(s)	382
BseMII	CTCAG	2 cut(s)	212, 324
BseXI	GCAGC	2 cut(s)	74, 189
BshFI	GGCC	2 cut(s)	5, 17
BsiSI	CCGG	2 cut(s)	123, 206
BslFI	GGGAC	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	5, 17
Bso31I	GGTCTC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	81, 180, 327
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	2 cut(s)	5, 17
BspCNI	CTCAG	2 cut(s)	211, 325
BspTNI	GGTCTC	1 cut(s)	171
BsrFI	RCCGGY	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	122
BssMI	GATC	3 cut(s)	81, 180, 327
BstAPI	GCANNNNNTGC	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	3 cut(s)	198, 333, 360
BstF5I	GGATG	1 cut(s)	382
BstHHI	GCGC	3 cut(s)	120, 262, 368
BstKTI	GATC	3 cut(s)	84, 183, 330
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	3 cut(s)	81, 180, 327
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 268, 365
BstNSI	RCATGY	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	74, 189
BstV2I	GAAGAC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	5, 17
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	3 cut(s)	120, 262, 368
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	3 cut(s)	25, 103, 304
CviJI	RGCY	6 cut(s)	5, 17, 129, 150, 202, 359
CviKI_1	RGCY	6 cut(s)	5, 17, 129, 150, 202, 359
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	3 cut(s)	198, 333, 360
DpnI	GATC	3 cut(s)	83, 182, 329
DpnII	GATC	3 cut(s)	81, 180, 327
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
EaeI	YGGCCR	1 cut(s)	3
Eco147I	AGGCCT	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	194
FaeI	CATG	3 cut(s)	28, 106, 307
FaiI	YATR	5 cut(s)	26, 104, 264, 305, 350
FalI	AAGNNNNNCTT	3 cut(s)	37, 170, 202
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	3 cut(s)	24, 102, 303
Fnu4HI	GCNGC	3 cut(s)	88, 127, 203
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	3 cut(s)	88, 127, 203
GlaI	GCGC	3 cut(s)	119, 261, 367
GluI	GCNGC	3 cut(s)	88, 127, 203
HaeIII	GGCC	2 cut(s)	5, 17
HapII	CCGG	2 cut(s)	123, 206
HhaI	GCGC	3 cut(s)	120, 262, 368
Hin1II	CATG	3 cut(s)	28, 106, 307
Hin6I	GCGC	3 cut(s)	118, 260, 366
HinP1I	GCGC	3 cut(s)	118, 260, 366
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	3 cut(s)	250, 274, 296
HpaII	CCGG	2 cut(s)	123, 206
HphI	GGTGA	2 cut(s)	127, 259
Hpy166II	GTNNAC	2 cut(s)	34, 295
Hpy188I	TCNGA	3 cut(s)	191, 232, 279
Hpy8I	GTNNAC	2 cut(s)	34, 295
Hpy99I	CGWCG	2 cut(s)	65, 247
HpyAV	CCTTC	1 cut(s)	367
HpyCH4V	TGCA	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 268, 365
HpyF3I	CTNAG	3 cut(s)	198, 333, 360
Hsp92II	CATG	3 cut(s)	28, 106, 307
HspAI	GCGC	3 cut(s)	118, 260, 366
Kzo9I	GATC	3 cut(s)	81, 180, 327
LpnPI	CCDG	7 cut(s)	31, 34, 100, 136, 148, 185, 219
Lsp1109I	GCAGC	2 cut(s)	74, 189
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	3 cut(s)	83, 182, 329
MboI	GATC	3 cut(s)	81, 180, 327
MboII	GAAGA	4 cut(s)	91, 178, 187, 190
MflI	RGATCY	1 cut(s)	81
MluCI	AATT	1 cut(s)	399
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	6 cut(s)	56, 109, 122, 228, 349, 373
MseI	TTAA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	2 cut(s)	123, 206
MwoI	GCNNNNNNNGC	3 cut(s)	126, 268, 365
NdeII	GATC	3 cut(s)	81, 180, 327
NlaIII	CATG	3 cut(s)	28, 106, 307
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	307
PceI	AGGCCT	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	250, 274
PkrI	GCNGC	3 cut(s)	89, 128, 204
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
PsiI	TTATAA	1 cut(s)	350
PspPI	GGNCC	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	81
PvuII	CAGCTG	1 cut(s)	202
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	3 cut(s)	88, 127, 203
Sau3AI	GATC	3 cut(s)	81, 180, 327
Sau96I	GGNCC	1 cut(s)	191
ScaI	AGTACT	1 cut(s)	317
SchI	GAGTC	1 cut(s)	290
SetI	ASST	5 cut(s)	167, 204, 216, 269, 384
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	1 cut(s)	399
SseBI	AGGCCT	1 cut(s)	17
SsiI	CCGC	1 cut(s)	126
StuI	AGGCCT	1 cut(s)	17
TaqI	TCGA	3 cut(s)	63, 299, 312
TasI	AATT	1 cut(s)	399
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	2 cut(s)	250, 274
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	2 cut(s)	87, 202
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	13, 119
TspRI	CASTG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	191
XceI	RCATGY	1 cut(s)	307
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.