Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001898

Physical Location & Seq

Genomic Coordinates Forward (+)

76166597 .. 76172636

Gene Structure 6040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG444100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAACACTCTCTGGCACACCGGCGGCTTCCTCACCAATAGTCACAGCCCTAAGAAGTTCAGGTCTCGCCGAAAGAAGATCGTCTTCGGACCGACTCAGCCGCCGGACTGCCTCGTGGTTTTCGACTCTGAGAGGAAGTCGTCGGTGATTCTAGAGGCGCATAGGTTGCAGGTTCCGATTGTTTCGCTTGTGGACTCGGACATGCCTATCGAGTACTACAACAAGATCACGTATCCGATTCCGTGGGAAGTACCACAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

87

Amino Acids

10.06

Weight (kDa)

9.25

Isoelectric Point (pI)

71.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	33 - 81	1.4e-07	Ribosomal protein S2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03600
fragaria_vesca	FvH4_7g08140
malus_domestica	MD02G1230600.v1.1
prunus_persica	Prupe.2G107500_v2.0.a1
pyrus_communis	pycom02g19970 pycom07g06540
rosa_chinensis	RchiOBHm_Chr1g0341081 RchiOBHm_Chr1g0363821 RchiOBHm_Chr1g0383121 RchiOBHm_Chr2g0085551 RchiOBHm_Chr3g0481141 RchiOBHm_Chr5g0027611 RchiOBHm_Chr5g0054321 RchiOBHm_Chr6g0246101
rosa_laevigata	RLG00000003952 RLG00000006546 RLG00000013359 RLG00000020654 RLG00000029063
rosa_multiflora	Rmu_sc0000533.1_g000047 Rmu_sc0000821.1_g000002 Rmu_sc0001211.1_g000068 Rmu_sc0002200.1_g000002 Rmu_sc0004332.1_g000001 Rmu_sc0004577.1_g000014 Rmu_sc0008563.1_g000010 Rmu_sc0012351.1_g000004 Rmu_ssc0000190.1_g000008
rosa_roxburghii	Rroxscaffold_1G00011600 Rroxscaffold_4G00311710
rosa_rugosa	Rorug01G0160000.1 Rorug05G0092000
rosa_samantha	Rh1AG174300 Rh1BG142600 Rh1BG221400 Rh1CG162100 Rh1CG365900 Rh1DG174200 Rh1DG248400 Rh1DG383600 Rh3AG240800 Rh5AG444100 Rh5DG194400
rosa_wichuraiana	Rw1G014550 Rw4G015450 Rw5G024540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	160
AciI	CCGC	2 cut(s)	24, 101
AfaI	GTAC	2 cut(s)	215, 252
Alw26I	GTCTC	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	2 cut(s)	25, 157
AvaII	GGWCC	1 cut(s)	89
BauI	CACGAG	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	76
BciVI	GTATCC	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	160
BfuI	GTATCC	1 cut(s)	243
BisI	GCNGC	2 cut(s)	25, 101
BlsI	GCNGC	2 cut(s)	26, 102
BmcAI	AGTACT	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	76
BsaAI	YACGTR	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	242
Bse118I	RCCGGY	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	242
BseMII	CTCAG	2 cut(s)	110, 120
BsiSI	CCGG	2 cut(s)	21, 104
BsmAI	GTCTC	1 cut(s)	69
Bso31I	GGTCTC	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	78, 225
BspACI	CCGC	2 cut(s)	24, 101
BspCNI	CTCAG	2 cut(s)	109, 121
BspLI	GGNNCC	1 cut(s)	174
BspMI	ACCTGC	1 cut(s)	160
BspTNI	GGTCTC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	2 cut(s)	78, 225
BssSI	CACGAG	1 cut(s)	113
Bst2BI	CACGAG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	166
BstBAI	YACGTR	1 cut(s)	231
BstDEI	CTNAG	3 cut(s)	51, 96, 129
BstDSI	CCRYGG	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	2 cut(s)	81, 228
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	2 cut(s)	78, 225
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNSI	RCATGY	1 cut(s)	205
BstV2I	GAAGAC	1 cut(s)	76
BsuI	GTATCC	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	242
BveI	ACCTGC	1 cut(s)	160
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	89
CpoI	CGGWCCG	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	214, 251
CspI	CGGWCCG	1 cut(s)	89
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	3 cut(s)	27, 48, 100
CviKI_1	RGCY	3 cut(s)	27, 48, 100
CviQI	GTAC	2 cut(s)	214, 251
DdeI	CTNAG	3 cut(s)	51, 96, 129
DpnI	GATC	2 cut(s)	80, 227
DpnII	GATC	2 cut(s)	78, 225
Eco31I	GGTCTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	89
FaeI	CATG	1 cut(s)	205
FaiI	YATR	2 cut(s)	162, 203
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	1 cut(s)	201
Fnu4HI	GCNGC	2 cut(s)	25, 101
Fsp4HI	GCNGC	2 cut(s)	25, 101
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	2 cut(s)	25, 101
HapII	CCGG	2 cut(s)	21, 104
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	1 cut(s)	205
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	5 cut(s)	94, 125, 148, 194, 238
HpaII	CCGG	2 cut(s)	21, 104
HphI	GGTGA	2 cut(s)	25, 157
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	5 cut(s)	89, 130, 177, 199, 237
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	258
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	3 cut(s)	51, 96, 129
HpySE526I	ACGT	1 cut(s)	230
Hsp92II	CATG	1 cut(s)	205
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	2 cut(s)	78, 225
LpnPI	CCDG	4 cut(s)	34, 46, 117, 155
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	2 cut(s)	80, 227
MboI	GATC	2 cut(s)	78, 225
MboII	GAAGA	2 cut(s)	76, 88
MlyI	GAGTC	3 cut(s)	88, 119, 188
MnlI	CCTC	4 cut(s)	41, 122, 126, 148
MseI	TTAA	1 cut(s)	262
MspI	CCGG	2 cut(s)	21, 104
MwoI	GCNNNNNNNGC	1 cut(s)	166
NdeII	GATC	2 cut(s)	78, 225
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	148, 238
PkrI	GCNGC	2 cut(s)	26, 102
PleI	GAGTC	3 cut(s)	88, 119, 188
PpsI	GAGTC	3 cut(s)	88, 119, 188
Ppu21I	YACGTR	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	89
RsaI	GTAC	2 cut(s)	215, 252
RsaNI	GTAC	2 cut(s)	214, 251
Rsr2I	CGGWCCG	1 cut(s)	89
RsrII	CGGWCCG	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	262
SatI	GCNGC	2 cut(s)	25, 101
Sau3AI	GATC	2 cut(s)	78, 225
Sau96I	GGNCC	1 cut(s)	89
ScaI	AGTACT	1 cut(s)	215
SchI	GAGTC	3 cut(s)	88, 119, 188
SetI	ASST	4 cut(s)	65, 167, 174, 233
SgrAI	CRCCGGYG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	89
SsiI	CCGC	2 cut(s)	24, 101
SspMI	CTAG	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	258
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	2 cut(s)	123, 210
TaqII	GACCGA	1 cut(s)	106
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	2 cut(s)	27, 103
TfiI	GAWTC	2 cut(s)	148, 238
Tru1I	TTAA	1 cut(s)	262
Tru9I	TTAA	1 cut(s)	262
TseFI	GTSAC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	89
XbaI	TCTAGA	1 cut(s)	151
XceI	RCATGY	1 cut(s)	205
XspI	CTAG	1 cut(s)	152
ZrmI	AGTACT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.