Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001474

Physical Location & Seq

Genomic Coordinates Forward (+)

2641012 .. 2642919

Gene Structure 1908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G08690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCTTCTAAGAGGATCTTGAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTGGTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTCCTGAAAGTCCGTATGCCGGAGGAGTGTTTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGTATTTGCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGGTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCTCTTGTGCCGGAGATAGCTCACATGTACAAGACAGATAGATCCAAGTACGAGTCAACTGCGAGAAGCTGGACACAAAAGTACGCAATGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

148

Amino Acids

16.55

Weight (kDa)

7.71

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	5 - 141	1.2e-55	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08690 AT3G08690 AT3G08700 AT3G08700
fragaria_vesca	FvH4_3g11640 FvH4_6g09540 FvH4_7g15850
malus_domestica	MD01G1075300.v1.1 MD01G1214300.v1.1 MD04G1176600.v1.1 MD07G1144200.v1.1 MD12G1190900.v1.1
prunus_persica	Prupe.2G183100_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1
pyrus_communis	pycom04g15580 pycom07g14260 pycom12g17820 pycom15g33780
rosa_chinensis	RchiOBHm_Chr1g0358671 RchiOBHm_Chr1g0380011 RchiOBHm_Chr3g0460141 RchiOBHm_Chr5g0018691
rosa_laevigata	RLG00000032387
rosa_multiflora	Rmu_co8206768.1_g000001 Rmu_sc0000449.1_g000050 Rmu_sc0001609.1_g000029 Rmu_sc0010911.1_g000002 Rmu_sc0025354.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059080 Rroxscaffold_4G00279800 Rroxscaffold_4G00297720 Rroxscaffold_6G00419800
rosa_rugosa	Rorug01G0416400 Rorug01G0416500 Rorug03G0040400 Rorug04G0115100 Rorug05G0046000
rosa_samantha	Rh1AG441000 Rh1BG396700 Rh3DG102700 Rh5AG137000 Rh5BG135800 Rh5CG147700
rosa_wichuraiana	Rw1G038350 Rw3G008300 Rw5G012140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	172
AclWI	GGATC	6 cut(s)	23, 41, 42, 54, 344, 387
AfaI	GTAC	4 cut(s)	221, 380, 401, 434
AfeI	AGCGCT	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflIII	ACRYGT	2 cut(s)	87, 375
AgsI	TTSAA	4 cut(s)	22, 57, 187, 268
AluBI	AGCT	3 cut(s)	28, 371, 420
AluI	AGCT	3 cut(s)	28, 371, 420
Alw21I	GWGCWC	1 cut(s)	30
AlwI	GGATC	6 cut(s)	23, 41, 42, 54, 344, 387
Aor13HI	TCCGGA	1 cut(s)	172
Aor51HI	AGCGCT	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	71, 116
AvaII	GGWCC	2 cut(s)	71, 116
BamHI	GGATCC	1 cut(s)	46
BanII	GRGCYC	2 cut(s)	30, 284
Bbv12I	GWGCWC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	1 cut(s)	231
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BfmI	CTRYAG	2 cut(s)	38, 61
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
Bme18I	GGWCC	2 cut(s)	71, 116
BmgT120I	GGNCC	2 cut(s)	71, 116
BmiI	GGNNCC	3 cut(s)	48, 117, 281
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
Bpu10I	CCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	14
BsaWI	WCCGGW	2 cut(s)	73, 172
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse3DI	GCAATG	3 cut(s)	247, 281, 444
BseAI	TCCGGA	1 cut(s)	172
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	3 cut(s)	247, 281, 444
BseMII	CTCAG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	4 cut(s)	74, 138, 173, 362
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	129
Bsp1286I	GDGCHC	2 cut(s)	30, 284
Bsp13I	TCCGGA	1 cut(s)	172
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	5 cut(s)	15, 34, 46, 349, 392
BspCNI	CTCAG	1 cut(s)	73
BspEI	TCCGGA	1 cut(s)	172
BspLI	GGNNCC	3 cut(s)	48, 117, 281
BspMAI	CTGCAG	2 cut(s)	42, 65
BspPI	GGATC	6 cut(s)	23, 41, 42, 54, 344, 387
BsrDI	GCAATG	3 cut(s)	247, 281, 444
BsrGI	TGTACA	1 cut(s)	378
BssMI	GATC	5 cut(s)	15, 34, 46, 349, 392
BstAUI	TGTACA	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	102, 323
BstDEI	CTNAG	4 cut(s)	9, 81, 213, 300
BstF5I	GGATG	1 cut(s)	223
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	5 cut(s)	18, 37, 49, 352, 395
BstMBI	GATC	5 cut(s)	15, 34, 46, 349, 392
BstNSI	RCATGY	2 cut(s)	91, 379
BstSFI	CTRYAG	2 cut(s)	38, 61
BstV1I	GCAGC	1 cut(s)	75
BstX2I	RGATCY	4 cut(s)	15, 34, 46, 392
BstXI	CCANNNNNNTGG	1 cut(s)	112
BstYI	RGATCY	4 cut(s)	15, 34, 46, 392
BtsCI	GGATG	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	102, 323
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	71, 116
Csp6I	GTAC	4 cut(s)	220, 379, 400, 433
CviAII	CATG	3 cut(s)	88, 112, 376
CviJI	RGCY	8 cut(s)	5, 28, 80, 104, 190, 282, 371, 420
CviKI_1	RGCY	8 cut(s)	5, 28, 80, 104, 190, 282, 371, 420
CviQI	GTAC	4 cut(s)	220, 379, 400, 433
DdeI	CTNAG	4 cut(s)	9, 81, 213, 300
DpnI	GATC	5 cut(s)	17, 36, 48, 351, 394
DpnII	GATC	5 cut(s)	15, 34, 46, 349, 392
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	2 cut(s)	30, 284
Eco47I	GGWCC	2 cut(s)	71, 116
Eco47III	AGCGCT	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	28
EcoICRI	GAGCTC	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	116
EcoT38I	GRGCYC	2 cut(s)	30, 284
FaeI	CATG	3 cut(s)	91, 115, 379
FaiI	YATR	4 cut(s)	89, 113, 135, 377
FalI	AAGNNNNNCTT	1 cut(s)	34
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	3 cut(s)	87, 111, 375
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	1 cut(s)	210
FriOI	GRGCYC	2 cut(s)	30, 284
Fsp4HI	GCNGC	1 cut(s)	64
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	64
HaeII	RGCGCY	1 cut(s)	69
HapII	CCGG	4 cut(s)	74, 138, 173, 362
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	91, 115, 379
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	2 cut(s)	330, 408
HindII	GTYRAC	2 cut(s)	330, 408
HinfI	GANTC	1 cut(s)	404
HpaII	CCGG	4 cut(s)	74, 138, 173, 362
Hpy166II	GTNNAC	3 cut(s)	220, 330, 408
Hpy188III	TCNNGA	3 cut(s)	19, 122, 173
Hpy8I	GTNNAC	3 cut(s)	220, 330, 408
HpyAV	CCTTC	3 cut(s)	16, 37, 63
HpyCH4V	TGCA	2 cut(s)	40, 63
HpyF3I	CTNAG	4 cut(s)	9, 81, 213, 300
Hsp92II	CATG	3 cut(s)	91, 115, 379
HspAI	GCGC	1 cut(s)	66
Kpn2I	TCCGGA	1 cut(s)	172
Kzo9I	GATC	5 cut(s)	15, 34, 46, 349, 392
LmnI	GCTCC	2 cut(s)	25, 279
LpnPI	CCDG	9 cut(s)	54, 87, 135, 151, 186, 297, 357, 375, 406
Lsp1109I	GCAGC	1 cut(s)	75
MalI	GATC	5 cut(s)	17, 36, 48, 351, 394
MboI	GATC	5 cut(s)	15, 34, 46, 349, 392
MflI	RGATCY	4 cut(s)	15, 34, 46, 392
MhlI	GDGCHC	2 cut(s)	30, 284
MlyI	GAGTC	1 cut(s)	413
MnlI	CCTC	7 cut(s)	6, 60, 76, 129, 134, 180, 363
MroI	TCCGGA	1 cut(s)	172
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	110
MspI	CCGG	4 cut(s)	74, 138, 173, 362
NdeII	GATC	5 cut(s)	15, 34, 46, 349, 392
NlaIII	CATG	3 cut(s)	91, 115, 379
NlaIV	GGNNCC	3 cut(s)	48, 117, 281
NspI	RCATGY	2 cut(s)	91, 379
PciI	ACATGT	2 cut(s)	87, 375
PkrI	GCNGC	1 cut(s)	65
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
PpuMI	RGGWCCY	1 cut(s)	116
PscI	ACATGT	2 cut(s)	87, 375
Psp124BI	GAGCTC	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	116
PspN4I	GGNNCC	3 cut(s)	48, 117, 281
PspPI	GGNCC	2 cut(s)	71, 116
PspPPI	RGGWCCY	1 cut(s)	116
PstI	CTGCAG	2 cut(s)	42, 65
PsuI	RGATCY	4 cut(s)	15, 34, 46, 392
RsaI	GTAC	4 cut(s)	221, 380, 401, 434
RsaNI	GTAC	4 cut(s)	220, 379, 400, 433
RseI	CAYNNNNRTG	1 cut(s)	110
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	5 cut(s)	15, 34, 46, 349, 392
Sau96I	GGNCC	2 cut(s)	71, 116
SchI	GAGTC	1 cut(s)	413
SduI	GDGCHC	2 cut(s)	30, 284
SetI	ASST	7 cut(s)	30, 121, 201, 219, 306, 373, 422
SfcI	CTRYAG	2 cut(s)	38, 61
SinI	GGWCC	2 cut(s)	71, 116
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	30
TaqI	TCGA	1 cut(s)	314
TatI	WGTACW	1 cut(s)	378
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	152
TspGWI	ACGGA	1 cut(s)	120
VpaK11BI	GGWCC	2 cut(s)	71, 116
XceI	RCATGY	2 cut(s)	91, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.