Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001474

Physical Location & Seq

Genomic Coordinates Forward (+)

33271061 .. 33271420

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g33780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTTTCATTGGCAAGCAACGATTATGGGATCCCCTTATAGCCCATATGCAGGAGGTGATTTCCTGGTCACCATTCATTTCCCTCCAGATTATCCTTTTAAGCCCCCTAAGGTTGCATTTAGGACTAAGGTCTTCCACCCGAATATCAATAGCAACGGAAGCATTTGTCTTGACATCCTAAAAGAGCAATGGAGCCCAGCACTTACTATCTCTAAGGTATTGCTCTCAATCTGCTCATTGCTGATTGACCCAAATCCTGATGACCCTCTCGTGCCGGAGATTGCCCACATGTACAAAACTGATCGAGCCAAGTACGAATCCACTGCACGTGGCTGGACTGAGAAATATGCAATGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

120

Amino Acids

13.44

Weight (kDa)

6.89

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	1 - 111	3.3e-45	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08690 AT3G08690 AT3G08700 AT3G08700
fragaria_vesca	FvH4_3g11640 FvH4_6g09540 FvH4_7g15850
malus_domestica	MD01G1075300.v1.1 MD01G1214300.v1.1 MD04G1176600.v1.1 MD07G1144200.v1.1 MD12G1190900.v1.1
prunus_persica	Prupe.2G183100_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1
pyrus_communis	pycom04g15580 pycom07g14260 pycom12g17820 pycom15g33780
rosa_chinensis	RchiOBHm_Chr1g0358671 RchiOBHm_Chr1g0380011 RchiOBHm_Chr3g0460141 RchiOBHm_Chr5g0018691
rosa_laevigata	RLG00000032387
rosa_multiflora	Rmu_co8206768.1_g000001 Rmu_sc0000449.1_g000050 Rmu_sc0001609.1_g000029 Rmu_sc0010911.1_g000002 Rmu_sc0025354.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059080 Rroxscaffold_4G00279800 Rroxscaffold_4G00297720 Rroxscaffold_6G00419800
rosa_rugosa	Rorug01G0416400 Rorug01G0416500 Rorug03G0040400 Rorug04G0115100 Rorug05G0046000
rosa_samantha	Rh1AG441000 Rh1BG396700 Rh3DG102700 Rh5AG137000 Rh5BG135800 Rh5CG147700
rosa_wichuraiana	Rw1G038350 Rw3G008300 Rw5G012140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	24, 37
AcvI	CACGTG	1 cut(s)	329
AfaI	GTAC	2 cut(s)	293, 314
AfiI	CCNNNNNNNGG	1 cut(s)	50
AflIII	ACRYGT	1 cut(s)	288
AjnI	CCWGG	1 cut(s)	63
AlwI	GGATC	2 cut(s)	24, 37
AsuHPI	GGTGA	2 cut(s)	61, 68
AxyI	CCTNAGG	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	197
BauI	CACGAG	1 cut(s)	269
BbrPI	CACGTG	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	124
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	31, 194
BmrFI	CCNGG	1 cut(s)	65
BoxI	GACNNNNGTC	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	124
BpmI	CTGGAG	1 cut(s)	69
BsaAI	YACGTR	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse21I	CCTNAGG	1 cut(s)	108
Bse3DI	GCAATG	3 cut(s)	194, 236, 357
BseBI	CCWGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	3 cut(s)	194, 236, 357
BseMII	CTCAG	1 cut(s)	330
BseYI	CCCAGC	1 cut(s)	196
BsgI	GTGCAG	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	29, 301
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	31, 194
BspPI	GGATC	2 cut(s)	24, 37
BsrDI	GCAATG	3 cut(s)	194, 236, 357
BsrGI	TGTACA	1 cut(s)	291
BssMI	GATC	2 cut(s)	29, 301
BssSI	CACGAG	1 cut(s)	269
Bst2BI	CACGAG	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	65
BstAUI	TGTACA	1 cut(s)	291
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	4 cut(s)	108, 126, 213, 339
BstEII	GGTNACC	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	174
BstKTI	GATC	2 cut(s)	32, 304
BstMBI	GATC	2 cut(s)	29, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	1 cut(s)	65
BstNSI	RCATGY	1 cut(s)	292
BstPAI	GACNNNNGTC	1 cut(s)	128
BstPI	GGTNACC	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	63
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
Bsu36I	CCTNAGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	174
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	292, 313
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	5 cut(s)	42, 103, 195, 308, 333
CviKI_1	RGCY	5 cut(s)	42, 103, 195, 308, 333
CviQI	GTAC	2 cut(s)	292, 313
DdeI	CTNAG	4 cut(s)	108, 126, 213, 339
DpnI	GATC	2 cut(s)	31, 303
DpnII	GATC	2 cut(s)	29, 301
Eco24I	GRGCYC	1 cut(s)	197
Eco72I	CACGTG	1 cut(s)	329
Eco81I	CCTNAGG	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	197
FaeI	CATG	1 cut(s)	292
FaiI	YATR	6 cut(s)	26, 39, 46, 48, 290, 348
FatI	CATG	1 cut(s)	288
FauNDI	CATATG	1 cut(s)	46
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	197
GsaI	CCCAGC	1 cut(s)	200
GsuI	CTGGAG	1 cut(s)	69
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	1 cut(s)	292
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	2 cut(s)	61, 68
Hpy188III	TCNNGA	3 cut(s)	86, 170, 257
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	4 cut(s)	50, 116, 326, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	4 cut(s)	108, 126, 213, 339
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	29, 301
LmnI	GCTCC	1 cut(s)	192
LpnPI	CCDG	8 cut(s)	36, 50, 77, 99, 210, 270, 288, 319
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	2 cut(s)	31, 303
MboI	GATC	2 cut(s)	29, 301
MboII	GAAGA	1 cut(s)	124
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	1 cut(s)	197
MnlI	CCTC	3 cut(s)	47, 93, 276
MseI	TTAA	1 cut(s)	99
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	159
NdeI	CATATG	1 cut(s)	46
NdeII	GATC	2 cut(s)	29, 301
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	2 cut(s)	31, 194
NmuCI	GTSAC	1 cut(s)	67
NspI	RCATGY	1 cut(s)	292
PciI	ACATGT	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	317
PmaCI	CACGTG	1 cut(s)	329
PmlI	CACGTG	1 cut(s)	329
Ppu21I	YACGTR	1 cut(s)	329
PscI	ACATGT	1 cut(s)	288
PshAI	GACNNNNGTC	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	63
PspCI	CACGTG	1 cut(s)	329
PspEI	GGTNACC	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	31, 194
PsuI	RGATCY	1 cut(s)	29
RsaI	GTAC	2 cut(s)	293, 314
RsaNI	GTAC	2 cut(s)	292, 313
SaqAI	TTAA	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	29, 301
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	5 cut(s)	58, 114, 132, 219, 331
StyD4I	CCNGG	1 cut(s)	63
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	304
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	65
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	1 cut(s)	328
XceI	RCATGY	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.