Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001474

Physical Location & Seq

Genomic Coordinates Forward (+)

51919559 .. 51920417

Gene Structure 859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0416400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCAGCTCAATACATTTCAGTTCACCCTCTTCCTTTTCCTCTTCATCACCACCACTTGGGCTTCTGGTAGCGGTAGCGGCGGTGCTGCGGGCAGAAAGGTCATGTCCCGAGAAGCGTGGGAGACAGGGCCGACAAGTAGTGGTAGTGGCTCTGGCCATGGACCCAACTGGCAATATAGTTGGGGGTGGTGGAGTACTAGCCCGGGTGGTGGTTGGGGTTCTGGTTCTGGATCATCTGGTAGCAGGTCTGCTAATGGGTTTGGTAGGGGTTCAGGTTCTGGATATGGTTCGGGGTCTGGCGGTGGATACCATGGTGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGGCAAAACAACCATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

123

Amino Acids

11.86

Weight (kDa)

9.98

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08690 AT3G08690 AT3G08700 AT3G08700
fragaria_vesca	FvH4_3g11640 FvH4_6g09540 FvH4_7g15850
malus_domestica	MD01G1075300.v1.1 MD01G1214300.v1.1 MD04G1176600.v1.1 MD07G1144200.v1.1 MD12G1190900.v1.1
prunus_persica	Prupe.2G183100_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1
pyrus_communis	pycom04g15580 pycom07g14260 pycom12g17820 pycom15g33780
rosa_chinensis	RchiOBHm_Chr1g0358671 RchiOBHm_Chr1g0380011 RchiOBHm_Chr3g0460141 RchiOBHm_Chr5g0018691
rosa_laevigata	RLG00000032387
rosa_multiflora	Rmu_co8206768.1_g000001 Rmu_sc0000449.1_g000050 Rmu_sc0001609.1_g000029 Rmu_sc0010911.1_g000002 Rmu_sc0025354.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059080 Rroxscaffold_4G00279800 Rroxscaffold_4G00297720 Rroxscaffold_6G00419800
rosa_rugosa	Rorug01G0416400 Rorug01G0416500 Rorug03G0040400 Rorug04G0115100 Rorug05G0046000
rosa_samantha	Rh1AG441000 Rh1BG396700 Rh3DG102700 Rh5AG137000 Rh5BG135800 Rh5CG147700
rosa_wichuraiana	Rw1G038350 Rw3G008300 Rw5G012140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	234
AccB7I	CCANNNNNTGG	1 cut(s)	57
AciI	CCGC	5 cut(s)	72, 78, 81, 89, 300
AclWI	GGATC	1 cut(s)	238
AcoI	YGGCCR	1 cut(s)	154
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	2 cut(s)	57, 209
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	1 cut(s)	238
AlwNI	CAGNNNCTG	1 cut(s)	278
Ama87I	CYCGRG	2 cut(s)	108, 202
AoxI	GGCC	2 cut(s)	128, 154
ApeKI	GCWGC	2 cut(s)	4, 86
AspS9I	GGNCC	2 cut(s)	128, 161
AsuC2I	CCSGG	2 cut(s)	203, 204
AsuHPI	GGTGA	2 cut(s)	16, 40
AvaI	CYCGRG	2 cut(s)	108, 202
AvaII	GGWCC	1 cut(s)	161
BaeI	ACNNNNGTAYC	2 cut(s)	298, 331
BalI	TGGCCA	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	16, 73
BciVI	GTATCC	1 cut(s)	299
BcnI	CCSGG	2 cut(s)	203, 204
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	234
BfuI	GTATCC	1 cut(s)	299
BisI	GCNGC	3 cut(s)	5, 79, 87
BlsI	GCNGC	3 cut(s)	6, 80, 88
BmcAI	AGTACT	1 cut(s)	196
Bme1390I	CCNGG	2 cut(s)	203, 204
Bme18I	GGWCC	1 cut(s)	161
BmeT110I	CYCGRG	2 cut(s)	108, 202
BmgT120I	GGNCC	2 cut(s)	128, 161
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	2 cut(s)	203, 204
BpuMI	CCSGG	2 cut(s)	203, 204
BsaJI	CCNNGG	4 cut(s)	157, 202, 310, 364
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 209
Bse1I	ACTGG	1 cut(s)	173
BseDI	CCNNGG	4 cut(s)	157, 202, 310, 364
BseLI	CCNNNNNNNGG	2 cut(s)	57, 209
BseNI	ACTGG	1 cut(s)	173
BseRI	GAGGAG	6 cut(s)	348, 351, 354, 357, 360, 363
BseXI	GCAGC	2 cut(s)	16, 73
BshFI	GGCC	2 cut(s)	130, 156
BsiHKCI	CYCGRG	2 cut(s)	108, 202
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	2 cut(s)	57, 209
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	130, 156
BsoBI	CYCGRG	2 cut(s)	108, 202
Bsp143I	GATC	1 cut(s)	230
Bsp19I	CCATGG	3 cut(s)	157, 310, 364
BspACI	CCGC	5 cut(s)	72, 78, 81, 89, 300
BspANI	GGCC	2 cut(s)	130, 156
BspLI	GGNNCC	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	234
BspPI	GGATC	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	173
BssECI	CCNNGG	4 cut(s)	157, 202, 310, 364
BssMI	GATC	1 cut(s)	230
BssT1I	CCWWGG	3 cut(s)	157, 310, 364
Bst6I	CTCTTC	2 cut(s)	35, 47
BstC8I	GCNNGC	1 cut(s)	91
BstDSI	CCRYGG	3 cut(s)	157, 310, 364
BstKTI	GATC	1 cut(s)	233
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstSCI	CCNGG	2 cut(s)	201, 202
BstV1I	GCAGC	2 cut(s)	16, 73
BstXI	CCANNNNNNTGG	1 cut(s)	317
BsuI	GTATCC	1 cut(s)	299
BsuRI	GGCC	2 cut(s)	130, 156
BtgI	CCRYGG	3 cut(s)	157, 310, 364
BveI	ACCTGC	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	128, 161
Cfr9I	CCCGGG	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	4 cut(s)	103, 158, 311, 365
CviJI	RGCY	7 cut(s)	7, 62, 130, 150, 156, 201, 369
CviKI_1	RGCY	7 cut(s)	7, 62, 130, 150, 156, 201, 369
CviQI	GTAC	1 cut(s)	195
DpnI	GATC	1 cut(s)	232
DpnII	GATC	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	2 cut(s)	35, 47
EarI	CTCTTC	2 cut(s)	35, 47
Eco130I	CCWWGG	3 cut(s)	157, 310, 364
Eco47I	GGWCC	1 cut(s)	161
Eco88I	CYCGRG	2 cut(s)	108, 202
EcoT14I	CCWWGG	3 cut(s)	157, 310, 364
ErhI	CCWWGG	3 cut(s)	157, 310, 364
FaeI	CATG	4 cut(s)	106, 161, 314, 368
FaiI	YATR	6 cut(s)	104, 159, 177, 285, 312, 366
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	4 cut(s)	102, 157, 310, 364
FauI	CCCGC	1 cut(s)	82
Fnu4HI	GCNGC	3 cut(s)	5, 79, 87
Fsp4HI	GCNGC	3 cut(s)	5, 79, 87
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	3 cut(s)	5, 79, 87
HaeIII	GGCC	2 cut(s)	130, 156
HapII	CCGG	1 cut(s)	203
Hin1II	CATG	4 cut(s)	106, 161, 314, 368
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	2 cut(s)	16, 40
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188III	TCNNGA	3 cut(s)	108, 228, 279
Hpy8I	GTNNAC	1 cut(s)	24
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
Hsp92II	CATG	4 cut(s)	106, 161, 314, 368
Kzo9I	GATC	1 cut(s)	230
Lsp1109I	GCAGC	2 cut(s)	16, 73
MaeI	CTAG	1 cut(s)	198
MalI	GATC	1 cut(s)	232
MboI	GATC	1 cut(s)	230
MboII	GAAGA	2 cut(s)	22, 34
MlsI	TGGCCA	1 cut(s)	156
MluNI	TGGCCA	1 cut(s)	156
MnlI	CCTC	9 cut(s)	38, 50, 326, 329, 332, 335, 338, 341, 344
Mox20I	TGGCCA	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	315
Msp20I	TGGCCA	1 cut(s)	156
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	2 cut(s)	203, 204
MwoI	GCNNNNNNNGC	1 cut(s)	78
NciI	CCSGG	2 cut(s)	203, 204
NcoI	CCATGG	3 cut(s)	157, 310, 364
NdeII	GATC	1 cut(s)	230
NlaIII	CATG	4 cut(s)	106, 161, 314, 368
NlaIV	GGNNCC	1 cut(s)	163
PflMI	CCANNNNNTGG	1 cut(s)	57
PkrI	GCNGC	3 cut(s)	6, 80, 88
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	2 cut(s)	128, 161
PstNI	CAGNNNCTG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	315
SatI	GCNGC	3 cut(s)	5, 79, 87
Sau3AI	GATC	1 cut(s)	230
Sau96I	GGNCC	2 cut(s)	128, 161
ScaI	AGTACT	1 cut(s)	196
ScrFI	CCNGG	2 cut(s)	203, 204
SetI	ASST	4 cut(s)	9, 102, 248, 277
SinI	GGWCC	1 cut(s)	161
SmaI	CCCGGG	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	315
SsiI	CCGC	5 cut(s)	72, 78, 81, 89, 300
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	201, 202
StyI	CCWWGG	3 cut(s)	157, 310, 364
TatI	WGTACW	1 cut(s)	194
TauI	GCSGC	1 cut(s)	81
TseI	GCWGC	2 cut(s)	4, 86
TspDTI	ATGAA	1 cut(s)	34
TspMI	CCCGGG	1 cut(s)	202
Van91I	CCANNNNNTGG	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XmaI	CCCGGG	1 cut(s)	202
XspI	CTAG	1 cut(s)	198
ZrmI	AGTACT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.