Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001474

Physical Location & Seq

Genomic Coordinates Forward (+)

14048944 .. 14051148

Gene Structure 2205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG137000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCGAGAAAAAATTCTCAATAAAATCTGTTCTCGGCTTTGTAAGTCTTGGGTTGTAAGTTGCATATCAACACAAGCTTCATCATCGATCATGGCCTCGAAGCGCATCTCAAAGGAGCTCATGGATCTACAGAGGGATCCTCCAACTAATTGCAGCGCCGGTCCGGTGGCGGCTAACATGTTCCGTTGGCAAGCGACGATTATGGGACCCCCTGATAGCCCATACGCAGGAGGTGTATTCCATGTCAACGTTGACTTCCCTCCTGATTATCCTTTCAAACCTCCCAAGGTTTCATTCAAGACTCAGGTCTTCCACCCCAATGTCAATAGCAACGGAAGCATATGCCTTGATATCCTCAAAGAACAATGGAGTCCAGCCCTAACTATCTCTAAGGTGTTGCTATCGATCTGCTCGTTGTTGACAGACCCGAATCCTGAAGACCCCCTCGTGCCGGAGATTGCCCATATGTATAAAACTGATCGAGCCAAGTATGAAGCAACTGCGCGTAGCTGGACTCAGAAGTATGCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

177

Amino Acids

19.75

Weight (kDa)

8.9

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	35 - 171	2.6e-55	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08690 AT3G08690 AT3G08700 AT3G08700
fragaria_vesca	FvH4_3g11640 FvH4_6g09540 FvH4_7g15850
malus_domestica	MD01G1075300.v1.1 MD01G1214300.v1.1 MD04G1176600.v1.1 MD07G1144200.v1.1 MD12G1190900.v1.1
prunus_persica	Prupe.2G183100_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1
pyrus_communis	pycom04g15580 pycom07g14260 pycom12g17820 pycom15g33780
rosa_chinensis	RchiOBHm_Chr1g0358671 RchiOBHm_Chr1g0380011 RchiOBHm_Chr3g0460141 RchiOBHm_Chr5g0018691
rosa_laevigata	RLG00000032387
rosa_multiflora	Rmu_co8206768.1_g000001 Rmu_sc0000449.1_g000050 Rmu_sc0001609.1_g000029 Rmu_sc0010911.1_g000002 Rmu_sc0025354.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059080 Rroxscaffold_4G00279800 Rroxscaffold_4G00297720 Rroxscaffold_6G00419800
rosa_rugosa	Rorug01G0416400 Rorug01G0416500 Rorug03G0040400 Rorug04G0115100 Rorug05G0046000
rosa_samantha	Rh1AG441000 Rh1BG396700 Rh3DG102700 Rh5AG137000 Rh5BG135800 Rh5CG147700
rosa_wichuraiana	Rw1G038350 Rw3G008300 Rw5G012140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	505
AciI	CCGC	1 cut(s)	170
AclI	AACGTT	1 cut(s)	249
AclWI	GGATC	3 cut(s)	131, 132, 144
AcsI	RAATTY	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	456
AfiI	CCNNNNNNNGG	2 cut(s)	227, 451
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	2 cut(s)	277, 298
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	3 cut(s)	77, 118, 510
AluI	AGCT	3 cut(s)	77, 118, 510
Alw21I	GWGCWC	1 cut(s)	120
AlwI	GGATC	3 cut(s)	131, 132, 144
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	153
ApoI	RAATTY	1 cut(s)	12
Asp700I	GAANNNNTTC	1 cut(s)	12
AspLEI	GCGC	3 cut(s)	105, 158, 505
AspS9I	GGNCC	2 cut(s)	161, 206
AvaII	GGWCC	2 cut(s)	161, 206
BamHI	GGATCC	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	120
BauI	CACGAG	1 cut(s)	446
BbsI	GAAGAC	2 cut(s)	301, 444
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	128
BfoI	RGCGCY	1 cut(s)	159
BisI	GCNGC	2 cut(s)	154, 171
BlsI	GCNGC	2 cut(s)	155, 172
Bme18I	GGWCC	2 cut(s)	161, 206
BmgT120I	GGNCC	2 cut(s)	161, 206
BmiI	GGNNCC	3 cut(s)	138, 207, 208
BmsI	GCATC	1 cut(s)	114
BoxI	GACNNNNGTC	1 cut(s)	305
BpiI	GAAGAC	2 cut(s)	301, 444
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
Bsa29I	ATCGAT	2 cut(s)	86, 404
BsaJI	CCNNGG	1 cut(s)	285
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 451
Bse118I	RCCGGY	1 cut(s)	158
BseCI	ATCGAT	2 cut(s)	86, 404
BseDI	CCNNGG	1 cut(s)	285
BseLI	CCNNNNNNNGG	2 cut(s)	227, 451
BseMII	CTCAG	2 cut(s)	317, 530
BseXI	GCAGC	1 cut(s)	165
Bsh1236I	CGCG	1 cut(s)	505
BshFI	GGCC	1 cut(s)	95
BshVI	ATCGAT	2 cut(s)	86, 404
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	3 cut(s)	159, 164, 452
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	227, 451
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	5 cut(s)	87, 124, 136, 405, 478
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	316, 529
BspDI	ATCGAT	2 cut(s)	86, 404
BspFNI	CGCG	1 cut(s)	505
BspLI	GGNNCC	3 cut(s)	138, 207, 208
BspPI	GGATC	3 cut(s)	131, 132, 144
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	5 cut(s)	87, 124, 136, 405, 478
BssSI	CACGAG	1 cut(s)	446
BssT1I	CCWWGG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	446
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	3 cut(s)	303, 390, 516
BstFNI	CGCG	1 cut(s)	505
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	3 cut(s)	105, 158, 505
BstKTI	GATC	5 cut(s)	90, 127, 139, 408, 481
BstMBI	GATC	5 cut(s)	87, 124, 136, 405, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNSI	RCATGY	1 cut(s)	181
BstPAI	GACNNNNGTC	1 cut(s)	305
BstSFI	CTRYAG	1 cut(s)	128
BstUI	CGCG	1 cut(s)	505
BstV1I	GCAGC	1 cut(s)	165
BstV2I	GAAGAC	2 cut(s)	301, 444
BstX2I	RGATCY	2 cut(s)	124, 136
BstYI	RGATCY	2 cut(s)	124, 136
Bsu15I	ATCGAT	2 cut(s)	86, 404
BsuRI	GGCC	1 cut(s)	95
BsuTUI	ATCGAT	2 cut(s)	86, 404
Cac8I	GCNNGC	1 cut(s)	192
CfoI	GCGC	3 cut(s)	105, 158, 505
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	161, 206
ClaI	ATCGAT	2 cut(s)	86, 404
CpoI	CGGWCCG	1 cut(s)	161
CspI	CGGWCCG	1 cut(s)	161
CviAII	CATG	4 cut(s)	91, 121, 178, 242
CviJI	RGCY	9 cut(s)	37, 77, 95, 118, 173, 219, 377, 485, 510
CviKI_1	RGCY	9 cut(s)	37, 77, 95, 118, 173, 219, 377, 485, 510
DdeI	CTNAG	3 cut(s)	303, 390, 516
DpnI	GATC	5 cut(s)	89, 126, 138, 407, 480
DpnII	GATC	5 cut(s)	87, 124, 136, 405, 478
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	2 cut(s)	161, 206
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	456
EcoICRI	GAGCTC	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRV	GATATC	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	4 cut(s)	94, 124, 181, 245
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	4 cut(s)	90, 120, 177, 241
FauNDI	CATATG	2 cut(s)	341, 465
Fnu4HI	GCNGC	2 cut(s)	154, 171
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	2 cut(s)	154, 171
GlaI	GCGC	3 cut(s)	104, 157, 504
GluI	GCNGC	2 cut(s)	154, 171
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	3 cut(s)	159, 164, 452
HhaI	GCGC	3 cut(s)	105, 158, 505
Hin1II	CATG	4 cut(s)	94, 124, 181, 245
Hin6I	GCGC	3 cut(s)	103, 156, 503
HinP1I	GCGC	3 cut(s)	103, 156, 503
HincII	GTYRAC	3 cut(s)	247, 253, 420
HindII	GTYRAC	3 cut(s)	247, 253, 420
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	4 cut(s)	301, 370, 430, 514
HpaII	CCGG	3 cut(s)	159, 164, 452
Hpy166II	GTNNAC	3 cut(s)	247, 253, 420
Hpy188I	TCNGA	1 cut(s)	519
Hpy188III	TCNNGA	3 cut(s)	263, 298, 434
Hpy8I	GTNNAC	3 cut(s)	247, 253, 420
Hpy99I	CGWCG	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	3 cut(s)	63, 153, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpyF3I	CTNAG	3 cut(s)	303, 390, 516
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	4 cut(s)	94, 124, 181, 245
HspAI	GCGC	3 cut(s)	103, 156, 503
KflI	GGGWCCC	1 cut(s)	206
Kzo9I	GATC	5 cut(s)	87, 124, 136, 405, 478
LmnI	GCTCC	1 cut(s)	115
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	1 cut(s)	114
MaeII	ACGT	1 cut(s)	249
MalI	GATC	5 cut(s)	89, 126, 138, 407, 480
MboI	GATC	5 cut(s)	87, 124, 136, 405, 478
MboII	GAAGA	2 cut(s)	301, 449
MflI	RGATCY	2 cut(s)	124, 136
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	2 cut(s)	12, 148
MlyI	GAGTC	3 cut(s)	295, 379, 508
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	8 cut(s)	106, 126, 150, 224, 270, 291, 365, 455
MroXI	GAANNNNTTC	1 cut(s)	12
MseI	TTAA	1 cut(s)	532
MslI	CAYNNNNRTG	1 cut(s)	318
MspI	CCGG	3 cut(s)	159, 164, 452
MvnI	CGCG	1 cut(s)	505
MwoI	GCNNNNNNNGC	1 cut(s)	336
NdeI	CATATG	2 cut(s)	341, 465
NdeII	GATC	5 cut(s)	87, 124, 136, 405, 478
NlaIII	CATG	4 cut(s)	94, 124, 181, 245
NlaIV	GGNNCC	3 cut(s)	138, 207, 208
NmeAIII	GCCGAG	1 cut(s)	13
NspI	RCATGY	1 cut(s)	181
PciI	ACATGT	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	410
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	430
PkrI	GCNGC	2 cut(s)	155, 172
PleI	GAGTC	3 cut(s)	295, 378, 508
PpsI	GAGTC	3 cut(s)	295, 378, 508
PpuMI	RGGWCCY	1 cut(s)	206
PscI	ACATGT	1 cut(s)	177
PshAI	GACNNNNGTC	1 cut(s)	305
Psp124BI	GAGCTC	1 cut(s)	120
Psp1406I	AACGTT	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	206
PspN4I	GGNNCC	3 cut(s)	138, 207, 208
PspPI	GGNCC	2 cut(s)	161, 206
PspPPI	RGGWCCY	1 cut(s)	206
PsuI	RGATCY	2 cut(s)	124, 136
RseI	CAYNNNNRTG	1 cut(s)	318
Rsr2I	CGGWCCG	1 cut(s)	161
RsrII	CGGWCCG	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	532
SatI	GCNGC	2 cut(s)	154, 171
Sau3AI	GATC	5 cut(s)	87, 124, 136, 405, 478
Sau96I	GGNCC	2 cut(s)	161, 206
SchI	GAGTC	3 cut(s)	295, 379, 508
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	9 cut(s)	79, 120, 235, 252, 283, 291, 309, 396, 512
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	1 cut(s)	128
SinI	GGWCC	2 cut(s)	161, 206
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	2 cut(s)	12, 148
SsiI	CCGC	1 cut(s)	170
SstI	GAGCTC	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	285
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	4 cut(s)	86, 98, 404, 481
TasI	AATT	2 cut(s)	12, 148
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	1 cut(s)	532
Tru9I	TTAA	1 cut(s)	532
TseI	GCWGC	1 cut(s)	153
TspDTI	ATGAA	3 cut(s)	69, 282, 507
TspGWI	ACGGA	2 cut(s)	173, 348
VpaK11BI	GGWCC	2 cut(s)	161, 206
XapI	RAATTY	1 cut(s)	12
XceI	RCATGY	1 cut(s)	181
XmnI	GAANNNNTTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.