Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001474

Physical Location & Seq

Genomic Coordinates Forward (+)

22535010 .. 22538387

Gene Structure 3378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G183100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCTTCAAAACGGATCTTGAAGGAGCTCAAAGATCTCCAGAAGGACCCCCCGACCTCTTGCAGCGCAGGGCCTGTCGCTGAGGACATGTTTCATTGGCAAGCAACGATAATGGGCCCCCCAGATAGTCCTTATGCAGGGGGTGTCTTTCTAGTTACCATTCACTTCCCTCCTGATTATCCATTCAAACCACCTAAGGTTGCGTTTAGGACTAAGGTCTTTCATCCAAATATCAACAGCAATGGAAGTATCTGCCTTGACATTTTGAAAGAGCAGTGGAGCCCTGCTCTAACCATATCTAAGGTGTTGCTATCCATTTGTTCCCTGTTGACGGACCCAAACCCAGATGATCCCCTGGTGCCAGAAATTGCTCATATGTACAAGACAGACCGGGCAAAGTATGAGACAACCGCTAGGAGCTGGACCCAGAAGTACGCTATGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

149

Amino Acids

16.53

Weight (kDa)

7.72

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08690 AT3G08690 AT3G08700 AT3G08700
fragaria_vesca	FvH4_3g11640 FvH4_6g09540 FvH4_7g15850
malus_domestica	MD01G1075300.v1.1 MD01G1214300.v1.1 MD04G1176600.v1.1 MD07G1144200.v1.1 MD12G1190900.v1.1
prunus_persica	Prupe.2G183100_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1
pyrus_communis	pycom04g15580 pycom07g14260 pycom12g17820 pycom15g33780
rosa_chinensis	RchiOBHm_Chr1g0358671 RchiOBHm_Chr1g0380011 RchiOBHm_Chr3g0460141 RchiOBHm_Chr5g0018691
rosa_laevigata	RLG00000032387
rosa_multiflora	Rmu_co8206768.1_g000001 Rmu_sc0000449.1_g000050 Rmu_sc0001609.1_g000029 Rmu_sc0010911.1_g000002 Rmu_sc0025354.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059080 Rroxscaffold_4G00279800 Rroxscaffold_4G00297720 Rroxscaffold_6G00419800
rosa_rugosa	Rorug01G0416400 Rorug01G0416500 Rorug03G0040400 Rorug04G0115100 Rorug05G0046000
rosa_samantha	Rh1AG441000 Rh1BG396700 Rh3DG102700 Rh5AG137000 Rh5BG135800 Rh5CG147700
rosa_wichuraiana	Rw1G038350 Rw3G008300 Rw5G012140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	358
AciI	CCGC	1 cut(s)	411
AclWI	GGATC	2 cut(s)	23, 344
AfaI	GTAC	2 cut(s)	380, 434
AfiI	CCNNNNNNNGG	2 cut(s)	137, 331
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	4 cut(s)	9, 22, 187, 268
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	2 cut(s)	28, 420
AluI	AGCT	2 cut(s)	28, 420
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	2 cut(s)	23, 344
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	71, 115
ApaI	GGGCCC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	6 cut(s)	46, 71, 115, 116, 334, 423
AsuC2I	CCSGG	1 cut(s)	392
AvaII	GGWCC	3 cut(s)	46, 334, 423
AxyI	CCTNAGG	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	358
BanII	GRGCYC	3 cut(s)	30, 119, 284
Bbv12I	GWGCWC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	392
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	2 cut(s)	152, 414
BglII	AGATCT	1 cut(s)	34
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
Bme1390I	CCNGG	2 cut(s)	356, 392
Bme18I	GGWCC	3 cut(s)	46, 334, 423
BmgT120I	GGNCC	6 cut(s)	46, 71, 115, 116, 334, 423
BmiI	GGNNCC	7 cut(s)	48, 117, 118, 281, 336, 360, 425
BmrFI	CCNGG	2 cut(s)	356, 392
BoxI	GACNNNNGTC	1 cut(s)	215
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
BpmI	CTGGAG	1 cut(s)	23
Bpu10I	CCTNAGC	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 331
Bse21I	CCTNAGG	1 cut(s)	195
Bse3DI	GCAATG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	2 cut(s)	137, 331
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	75
BshFI	GGCC	2 cut(s)	73, 117
BshNI	GGYRCC	1 cut(s)	358
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	391
BslI	CCNNNNNNNGG	2 cut(s)	137, 331
BsmAI	GTCTC	1 cut(s)	398
BsnI	GGCC	2 cut(s)	73, 117
Bsp120I	GGGCCC	1 cut(s)	115
Bsp1286I	GDGCHC	3 cut(s)	30, 119, 284
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	3 cut(s)	15, 34, 349
BspACI	CCGC	1 cut(s)	411
BspANI	GGCC	2 cut(s)	73, 117
BspCNI	CTCAG	1 cut(s)	73
BspLI	GGNNCC	7 cut(s)	48, 117, 118, 281, 336, 360, 425
BspPI	GGATC	2 cut(s)	23, 344
BspT107I	GGYRCC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	247
BsrGI	TGTACA	1 cut(s)	378
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	3 cut(s)	15, 34, 349
Bst2UI	CCWGG	1 cut(s)	356
BstAUI	TGTACA	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	4 cut(s)	81, 195, 213, 300
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	3 cut(s)	18, 37, 352
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	3 cut(s)	15, 34, 349
BstNI	CCWGG	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	91
BstPAI	GACNNNNGTC	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	354, 390
BstSLI	GKGCMC	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	75
BstX2I	RGATCY	2 cut(s)	15, 34
BstYI	RGATCY	2 cut(s)	15, 34
Bsu36I	CCTNAGG	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	73, 117
BtsCI	GGATG	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	6 cut(s)	46, 71, 115, 116, 334, 423
Csp6I	GTAC	2 cut(s)	379, 433
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	7 cut(s)	5, 28, 73, 117, 282, 420, 444
CviKI_1	RGCY	7 cut(s)	5, 28, 73, 117, 282, 420, 444
CviQI	GTAC	2 cut(s)	379, 433
DdeI	CTNAG	4 cut(s)	81, 195, 213, 300
DpnI	GATC	3 cut(s)	17, 36, 351
DpnII	GATC	3 cut(s)	15, 34, 349
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	3 cut(s)	30, 119, 284
Eco47I	GGWCC	3 cut(s)	46, 334, 423
Eco53kI	GAGCTC	1 cut(s)	28
Eco81I	CCTNAGG	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	28
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoO109I	RGGNCCY	3 cut(s)	46, 71, 116
EcoRII	CCWGG	1 cut(s)	354
EcoT38I	GRGCYC	3 cut(s)	30, 119, 284
FaeI	CATG	1 cut(s)	91
FaiI	YATR	7 cut(s)	89, 135, 296, 375, 377, 402, 440
FatI	CATG	1 cut(s)	87
FauNDI	CATATG	1 cut(s)	375
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	1 cut(s)	210
FriOI	GRGCYC	3 cut(s)	30, 119, 284
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	2 cut(s)	152, 414
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	64
GsuI	CTGGAG	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	73, 117
HapII	CCGG	1 cut(s)	391
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HpaII	CCGG	1 cut(s)	391
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188III	TCNNGA	3 cut(s)	19, 40, 173
Hpy8I	GTNNAC	1 cut(s)	330
HpyAV	CCTTC	2 cut(s)	16, 37
HpyCH4V	TGCA	2 cut(s)	63, 137
HpyF3I	CTNAG	4 cut(s)	81, 195, 213, 300
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	15, 34, 349
LmnI	GCTCC	3 cut(s)	25, 279, 417
Lsp1109I	GCAGC	1 cut(s)	75
MaeI	CTAG	2 cut(s)	152, 414
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	3 cut(s)	17, 36, 351
MboI	GATC	3 cut(s)	15, 34, 349
MflI	RGATCY	2 cut(s)	15, 34
MhlI	GDGCHC	3 cut(s)	30, 119, 284
MluCI	AATT	1 cut(s)	366
MnlI	CCTC	3 cut(s)	67, 76, 180
MspI	CCGG	1 cut(s)	391
MspR9I	CCNGG	2 cut(s)	356, 392
MvaI	CCWGG	1 cut(s)	356
NciI	CCSGG	1 cut(s)	392
NdeI	CATATG	1 cut(s)	375
NdeII	GATC	3 cut(s)	15, 34, 349
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	7 cut(s)	48, 117, 118, 281, 336, 360, 425
NspI	RCATGY	1 cut(s)	91
PciI	ACATGT	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	65
PpuMI	RGGWCCY	1 cut(s)	46
PscI	ACATGT	1 cut(s)	87
PshAI	GACNNNNGTC	1 cut(s)	215
Psp124BI	GAGCTC	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	7 cut(s)	48, 117, 118, 281, 336, 360, 425
PspOMI	GGGCCC	1 cut(s)	115
PspPI	GGNCC	6 cut(s)	46, 71, 115, 116, 334, 423
PspPPI	RGGWCCY	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	2 cut(s)	15, 34
RsaI	GTAC	2 cut(s)	380, 434
RsaNI	GTAC	2 cut(s)	379, 433
SacI	GAGCTC	1 cut(s)	30
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	3 cut(s)	15, 34, 349
Sau96I	GGNCC	6 cut(s)	46, 71, 115, 116, 334, 423
ScrFI	CCNGG	2 cut(s)	356, 392
SduI	GDGCHC	3 cut(s)	30, 119, 284
SetI	ASST	7 cut(s)	30, 59, 196, 201, 219, 306, 422
SinI	GGWCC	3 cut(s)	46, 334, 423
Sse9I	AATT	1 cut(s)	366
SsiI	CCGC	1 cut(s)	411
SspMI	CTAG	2 cut(s)	152, 414
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	354, 390
TasI	AATT	1 cut(s)	366
TatI	WGTACW	1 cut(s)	378
TscAI	CASTG	1 cut(s)	281
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	83, 212
TspGWI	ACGGA	2 cut(s)	28, 347
TspRI	CASTG	1 cut(s)	281
VpaK11BI	GGWCC	3 cut(s)	46, 334, 423
XagI	CCTNNNNNAGG	1 cut(s)	135
XceI	RCATGY	1 cut(s)	91
XspI	CTAG	2 cut(s)	152, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.