Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001474

Physical Location & Seq

Genomic Coordinates Reverse (-)

51920491 .. 51923260

Gene Structure 2770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0416500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGTTACATTGAAAACACCTGAAAAAGAAAATGGGTTTCGTCCCAATTTTAAGAGGCCTAGAGTTTATGCAGTTCGACATTTCCCTGAAGGTTGTGGACGATTTGTGGCTCGAGTGCAGCCAAGTGAATGTGAAGAGGGTGATGAAGATATGAACACATTACCAGGGAAAAATCGCTCCCTGCCTAGTCCTCGAGTTGATGTTGATGTTGTTCGAGATTTTCCTAAAGGTTGTGGACCGATGGTAGTTTCTTCTTTGAAAGATGCTGAAGAGAAGAGTTTGGTTCCAGACGTTAAAGAATGCGAGCAGCGTGTTGTTGGTCACAAGTTGAGTGTTGCAAGTGTGGTTGATAAAGCTCATAACAAGGCGAAGAAAGCTTTGGCTGCATATCAAGAAAAGAGTTTGGTTCCAGACGTCAAGGATAAAGAATGCGAGCAGCGTGTTGTTGGTCACAAGTTGAGTGTTGCAAGTGTGGTTGATAAAGCTCATAACAAGGTGAAGAAAGCTTTGGCTGCATATCAAGAGACTTTGATTGAGATGGGTGGAGAATGCGATGCTAATTTCAACAGACTAAAGGGTTGGAAATTGTATGTTGAAGCAGCAATGTATCTTAAGAAGAAAGATAAATGGGTTAACACGACGAAACAAACAGGGGACATTCCAGGAGTGAAGGTTGGTGACAAGTTTCGGTATAGACCTGAATTAGCTATTGTTGGTCTTCATAGTCACTTTCAATGCGGTATTGATTATATGACAGAGGACGGGGAAATGATTGCCACAAGTATTGTTGAATCTGGCCGCTATGCGAACGAGACAGAATCACCTGATGTCATGATATACACAGGTCAAGGTGGAAATCCAAAGGTTTCAAAAGGGGAACCAATAGATCAAAAGCCCGAGCGTGGAAACCGTGCACTGATGAATAGCAAGGCAACAGGAACTCCTGTGAGGGTAATCCGGAGCTATAAATTGCGGGAGGAATCTGGTTATGTTTATCATGGTCTCTACATTGTGGATAATTTTTGGCGAAAAAGAGGAGATTATGGCAAGTTTGTGTTTAAATTTTTGTTGAGGAGGATTTCGGGTCAACCAAAACTCACACTTTGCAACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

371

Amino Acids

41.68

Weight (kDa)

9.24

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAD_SRA	PF02182	217 - 363	7.4e-47	SAD/SRA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08690 AT3G08690 AT3G08700 AT3G08700
fragaria_vesca	FvH4_3g11640 FvH4_6g09540 FvH4_7g15850
malus_domestica	MD01G1075300.v1.1 MD01G1214300.v1.1 MD04G1176600.v1.1 MD07G1144200.v1.1 MD12G1190900.v1.1
prunus_persica	Prupe.2G183100_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1
pyrus_communis	pycom04g15580 pycom07g14260 pycom12g17820 pycom15g33780
rosa_chinensis	RchiOBHm_Chr1g0358671 RchiOBHm_Chr1g0380011 RchiOBHm_Chr3g0460141 RchiOBHm_Chr5g0018691
rosa_laevigata	RLG00000032387
rosa_multiflora	Rmu_co8206768.1_g000001 Rmu_sc0000449.1_g000050 Rmu_sc0001609.1_g000029 Rmu_sc0010911.1_g000002 Rmu_sc0025354.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059080 Rroxscaffold_4G00279800 Rroxscaffold_4G00297720 Rroxscaffold_6G00419800
rosa_rugosa	Rorug01G0416400 Rorug01G0416500 Rorug03G0040400 Rorug04G0115100 Rorug05G0046000
rosa_samantha	Rh1AG441000 Rh1BG396700 Rh3DG102700 Rh5AG137000 Rh5BG135800 Rh5CG147700
rosa_wichuraiana	Rw1G038350 Rw3G008300 Rw5G012140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	417
AccIII	TCCGGA	1 cut(s)	957
AciI	CCGC	3 cut(s)	738, 799, 973
AcoI	YGGCCR	1 cut(s)	796
AcsI	RAATTY	1 cut(s)	1061
AcuI	CTGAAG	2 cut(s)	108, 288
AcyI	GRCGYC	1 cut(s)	414
AfiI	CCNNNNNNNGG	1 cut(s)	902
AflII	CTTAAG	1 cut(s)	611
AgsI	TTSAA	7 cut(s)	13, 259, 565, 596, 734, 791, 870
AjnI	CCWGG	2 cut(s)	163, 661
AjuI	GAANNNNNNNTTGG	4 cut(s)	362, 394, 491, 523
AluBI	AGCT	6 cut(s)	356, 377, 485, 506, 707, 963
AluI	AGCT	6 cut(s)	356, 377, 485, 506, 707, 963
Alw21I	GWGCWC	1 cut(s)	916
Alw26I	GTCTC	3 cut(s)	518, 806, 1007
Alw44I	GTGCAC	1 cut(s)	912
Ama87I	CYCGRG	3 cut(s)	111, 192, 896
Aor13HI	TCCGGA	1 cut(s)	957
AoxI	GGCC	2 cut(s)	56, 796
ApaLI	GTGCAC	1 cut(s)	912
ApeKI	GCWGC	6 cut(s)	118, 307, 383, 436, 512, 599
ApoI	RAATTY	1 cut(s)	1061
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	4 cut(s)	152, 508, 689, 813
AvaI	CYCGRG	3 cut(s)	111, 192, 896
AvaII	GGWCC	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	916
BbsI	GAAGAC	1 cut(s)	710
Bbv12I	GWGCWC	1 cut(s)	916
BbvI	GCAGC	6 cut(s)	130, 319, 370, 448, 499, 611
BccI	CCATC	2 cut(s)	235, 532
BciT130I	CCWGG	2 cut(s)	165, 663
BcoDI	GTCTC	3 cut(s)	518, 806, 1007
BfaI	CTAG	2 cut(s)	60, 186
BfrI	CTTAAG	1 cut(s)	611
BisI	GCNGC	7 cut(s)	119, 308, 384, 437, 513, 600, 799
BlsI	GCNGC	7 cut(s)	120, 309, 385, 438, 514, 601, 800
Bme1390I	CCNGG	2 cut(s)	165, 663
Bme18I	GGWCC	1 cut(s)	236
BmeT110I	CYCGRG	3 cut(s)	111, 192, 896
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	3 cut(s)	285, 408, 879
BmrFI	CCNGG	2 cut(s)	165, 663
BmsI	GCATC	2 cut(s)	253, 544
BpiI	GAAGAC	1 cut(s)	710
BsaHI	GRCGYC	1 cut(s)	414
BsaI	GGTCTC	1 cut(s)	1007
BsaJI	CCNNGG	1 cut(s)	164
BsaWI	WCCGGW	1 cut(s)	957
BsaXI	ACNNNNNCTCC	4 cut(s)	657, 687, 925, 955
Bsc4I	CCNNNNNNNGG	1 cut(s)	902
Bse3DI	GCAATG	1 cut(s)	609
BseAI	TCCGGA	1 cut(s)	957
BseBI	CCWGG	2 cut(s)	165, 663
BseDI	CCNNGG	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	902
BseMI	GCAATG	1 cut(s)	609
BseRI	GAGGAG	2 cut(s)	1050, 1087
BseSI	GKGCMC	1 cut(s)	916
BseXI	GCAGC	6 cut(s)	130, 319, 370, 448, 499, 611
BsgI	GTGCAG	1 cut(s)	137
BshFI	GGCC	2 cut(s)	58, 798
BsiHKAI	GWGCWC	1 cut(s)	916
BsiHKCI	CYCGRG	3 cut(s)	111, 192, 896
BsiSI	CCGG	1 cut(s)	958
BslFI	GGGAC	2 cut(s)	27, 668
BslI	CCNNNNNNNGG	1 cut(s)	902
BsmAI	GTCTC	3 cut(s)	518, 806, 1007
BsmFI	GGGAC	2 cut(s)	27, 668
BsmI	GAATGC	3 cut(s)	305, 434, 554
BsnI	GGCC	2 cut(s)	58, 798
Bso31I	GGTCTC	1 cut(s)	1007
BsoBI	CYCGRG	3 cut(s)	111, 192, 896
Bsp1286I	GDGCHC	1 cut(s)	916
Bsp13I	TCCGGA	1 cut(s)	957
Bsp143I	GATC	1 cut(s)	886
BspACI	CCGC	3 cut(s)	738, 799, 973
BspANI	GGCC	2 cut(s)	58, 798
BspEI	TCCGGA	1 cut(s)	957
BspHI	TCATGA	1 cut(s)	831
BspLI	GGNNCC	3 cut(s)	285, 408, 879
BspTI	CTTAAG	1 cut(s)	611
BspTNI	GGTCTC	1 cut(s)	1007
BsrDI	GCAATG	1 cut(s)	609
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	1 cut(s)	886
BssNI	GRCGYC	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	165, 663
Bst4CI	ACNGT	2 cut(s)	911, 1112
Bst6I	CTCTTC	3 cut(s)	129, 264, 269
BstACI	GRCGYC	1 cut(s)	414
BstAFI	CTTAAG	1 cut(s)	611
BstC8I	GCNNGC	2 cut(s)	305, 434
BstKTI	GATC	1 cut(s)	889
BstMAI	GTCTC	3 cut(s)	518, 806, 1007
BstMBI	GATC	1 cut(s)	886
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 383, 512
BstNI	CCWGG	2 cut(s)	165, 663
BstSCI	CCNGG	2 cut(s)	163, 661
BstSLI	GKGCMC	1 cut(s)	916
BstV1I	GCAGC	6 cut(s)	130, 319, 370, 448, 499, 611
BstV2I	GAAGAC	1 cut(s)	710
BsuRI	GGCC	2 cut(s)	58, 798
BtgZI	GCGATG	1 cut(s)	567
BtsIMutI	CAGTG	1 cut(s)	914
Cac8I	GCNNGC	2 cut(s)	305, 434
CciI	TCATGA	1 cut(s)	831
Cfr13I	GGNCC	1 cut(s)	236
CspCI	CAANNNNNGTGG	2 cut(s)	766, 801
CviAII	CATG	2 cut(s)	832, 998
DpnI	GATC	1 cut(s)	888
DpnII	GATC	1 cut(s)	886
DraI	TTTAAA	1 cut(s)	1060
EaeI	YGGCCR	1 cut(s)	796
Eam1104I	CTCTTC	3 cut(s)	129, 264, 269
EarI	CTCTTC	3 cut(s)	129, 264, 269
Eco147I	AGGCCT	1 cut(s)	58
Eco31I	GGTCTC	1 cut(s)	1007
Eco47I	GGWCC	1 cut(s)	236
Eco57I	CTGAAG	2 cut(s)	108, 288
Eco88I	CYCGRG	3 cut(s)	111, 192, 896
EcoRII	CCWGG	2 cut(s)	163, 661
FaeI	CATG	2 cut(s)	835, 1001
FaqI	GGGAC	2 cut(s)	27, 668
FatI	CATG	2 cut(s)	831, 997
FauI	CCCGC	1 cut(s)	966
Fnu4HI	GCNGC	7 cut(s)	119, 308, 384, 437, 513, 600, 799
Fsp4HI	GCNGC	7 cut(s)	119, 308, 384, 437, 513, 600, 799
FspBI	CTAG	2 cut(s)	60, 186
GluI	GCNGC	7 cut(s)	119, 308, 384, 437, 513, 600, 799
HaeIII	GGCC	2 cut(s)	58, 798
HapII	CCGG	1 cut(s)	958
Hin1I	GRCGYC	1 cut(s)	414
Hin1II	CATG	2 cut(s)	835, 1001
HincII	GTYRAC	2 cut(s)	634, 1088
HindII	GTYRAC	2 cut(s)	634, 1088
HindIII	AAGCTT	2 cut(s)	375, 504
HinfI	GANTC	3 cut(s)	791, 818, 980
HpaI	GTTAAC	1 cut(s)	634
HpaII	CCGG	1 cut(s)	958
HphI	GGTGA	4 cut(s)	152, 508, 689, 813
Hpy166II	GTNNAC	5 cut(s)	98, 236, 634, 914, 1088
Hpy188III	TCNNGA	7 cut(s)	215, 287, 392, 410, 521, 832, 958
Hpy8I	GTNNAC	5 cut(s)	98, 236, 634, 914, 1088
Hpy99I	CGWCG	1 cut(s)	643
HpyAV	CCTTC	2 cut(s)	83, 664
HpyCH4III	ACNGT	2 cut(s)	911, 1112
HpyCH4IV	ACGT	2 cut(s)	291, 414
HpyCH4V	TGCA	8 cut(s)	71, 118, 338, 386, 467, 515, 914, 1107
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 383, 512
HpySE526I	ACGT	2 cut(s)	291, 414
Hsp92I	GRCGYC	1 cut(s)	414
Hsp92II	CATG	2 cut(s)	835, 1001
Kpn2I	TCCGGA	1 cut(s)	957
KspAI	GTTAAC	1 cut(s)	634
Kzo9I	GATC	1 cut(s)	886
LmnI	GCTCC	2 cut(s)	182, 960
Lsp1109I	GCAGC	6 cut(s)	130, 319, 370, 448, 499, 611
LweI	GCATC	2 cut(s)	253, 544
MaeI	CTAG	2 cut(s)	60, 186
MaeII	ACGT	2 cut(s)	291, 414
MaeIII	GTNAC	5 cut(s)	4, 320, 449, 677, 725
MalI	GATC	1 cut(s)	888
MboI	GATC	1 cut(s)	886
MboII	GAAGA	9 cut(s)	146, 158, 243, 281, 286, 382, 511, 628, 710
MhlI	GDGCHC	1 cut(s)	916
MluCI	AATT	7 cut(s)	46, 559, 584, 701, 968, 1018, 1061
MmeI	TCCRAC	1 cut(s)	560
MnlI	CCTC	9 cut(s)	48, 130, 201, 751, 942, 970, 1028, 1065, 1068
MroI	TCCGGA	1 cut(s)	957
MseI	TTAA	5 cut(s)	51, 294, 612, 633, 1059
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	1 cut(s)	958
MspR9I	CCNGG	2 cut(s)	165, 663
Mva1269I	GAATGC	3 cut(s)	305, 434, 554
MvaI	CCWGG	2 cut(s)	165, 663
MwoI	GCNNNNNNNGC	3 cut(s)	374, 383, 512
NdeII	GATC	1 cut(s)	886
NlaIII	CATG	2 cut(s)	835, 1001
NlaIV	GGNNCC	3 cut(s)	285, 408, 879
NmuCI	GTSAC	4 cut(s)	320, 449, 677, 725
PaeR7I	CTCGAG	2 cut(s)	111, 192
PagI	TCATGA	1 cut(s)	831
PceI	AGGCCT	1 cut(s)	58
PctI	GAATGC	3 cut(s)	305, 434, 554
PfeI	GAWTC	3 cut(s)	791, 818, 980
PfoI	TCCNGGA	1 cut(s)	661
PkrI	GCNGC	7 cut(s)	120, 309, 385, 438, 514, 601, 800
Psp6I	CCWGG	2 cut(s)	163, 661
PspGI	CCWGG	2 cut(s)	163, 661
PspN4I	GGNNCC	3 cut(s)	285, 408, 879
PspPI	GGNCC	1 cut(s)	236
PspXI	VCTCGAGB	2 cut(s)	111, 192
SaqAI	TTAA	5 cut(s)	51, 294, 612, 633, 1059
SatI	GCNGC	7 cut(s)	119, 308, 384, 437, 513, 600, 799
Sau3AI	GATC	1 cut(s)	886
Sau96I	GGNCC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	165, 663
SduI	GDGCHC	1 cut(s)	916
SfaNI	GCATC	2 cut(s)	253, 544
Sfr274I	CTCGAG	2 cut(s)	111, 192
SinI	GGWCC	1 cut(s)	236
SlaI	CTCGAG	2 cut(s)	111, 192
SmlI	CTYRAG	3 cut(s)	111, 192, 611
SmoI	CTYRAG	3 cut(s)	111, 192, 611
Sse9I	AATT	7 cut(s)	46, 559, 584, 701, 968, 1018, 1061
SseBI	AGGCCT	1 cut(s)	58
SsiI	CCGC	3 cut(s)	738, 799, 973
SspMI	CTAG	2 cut(s)	60, 186
StuI	AGGCCT	1 cut(s)	58
StyD4I	CCNGG	2 cut(s)	163, 661
TaaI	ACNGT	2 cut(s)	911, 1112
TaiI	ACGT	2 cut(s)	294, 417
TaqI	TCGA	4 cut(s)	76, 112, 193, 214
TaqII	GACCGA	1 cut(s)	253
TasI	AATT	7 cut(s)	46, 559, 584, 701, 968, 1018, 1061
TauI	GCSGC	1 cut(s)	801
TfiI	GAWTC	3 cut(s)	791, 818, 980
Tru1I	TTAA	5 cut(s)	51, 294, 612, 633, 1059
Tru9I	TTAA	5 cut(s)	51, 294, 612, 633, 1059
TscAI	CASTG	1 cut(s)	921
TseFI	GTSAC	4 cut(s)	320, 449, 677, 725
TseI	GCWGC	6 cut(s)	118, 307, 383, 436, 512, 599
Tsp45I	GTSAC	4 cut(s)	320, 449, 677, 725
TspDTI	ATGAA	4 cut(s)	159, 167, 710, 935
TspRI	CASTG	1 cut(s)	921
Vha464I	CTTAAG	1 cut(s)	611
VneI	GTGCAC	1 cut(s)	912
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	1 cut(s)	1061
XhoI	CTCGAG	2 cut(s)	111, 192
XspI	CTAG	2 cut(s)	60, 186
ZraI	GACGTC	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.