Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001474

Physical Location & Seq

Genomic Coordinates Forward (+)

2643144 .. 2644775

Gene Structure 1632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G08700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCTTCTAAGAGGATTTCAAGGGAACTGAGGGATATGCAGAGACATCCTCCAGCAAACTGTAGCGCAGGTCCTGTGGCTGAGGAGGACATATTCCATTGGCAAGCAACTATCATGGGACCGCATGACAGTCCGTATTCCGGAGGCGTATTTACGGTTTCTATTGATTTCTCTTCGGATTATCCTTTCAAGCCACCAAAGGTGAATTTCAAGACTAAGGTGTACCACCCAAACATCGACAGCAAAGGAAGCATTTGCCTTGACATATTGAAAGAGCAATGGAGTCCTGCTCCTACCACATCCAAGGTTTTGTTGTCGATTTGCTCGCTGCTGACTGACCCGAACCCAAATGATCCTCTTGTGCCGGAGATAGCTCATCTCTACAAGGTAGATAAATCAAAATACGAGTCAACTGCACAAAAATGGACACAGAAGTACGCGATGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04621 ko04624 ko05418 map04013 map04120 map04141 map04621 map04624 map05418

Pfam Domains

Protein Families

UQ_con

Protein Analysis

149

Amino Acids

16.71

Weight (kDa)

7.73

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	5 - 142	3.5e-53	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08690 AT3G08690 AT3G08700 AT3G08700
fragaria_vesca	FvH4_3g11640 FvH4_6g09540 FvH4_7g15850
malus_domestica	MD01G1075300.v1.1 MD01G1214300.v1.1 MD04G1176600.v1.1 MD07G1144200.v1.1 MD12G1190900.v1.1
prunus_persica	Prupe.2G183100_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1
pyrus_communis	pycom04g15580 pycom07g14260 pycom12g17820 pycom15g33780
rosa_chinensis	RchiOBHm_Chr1g0358671 RchiOBHm_Chr1g0380011 RchiOBHm_Chr3g0460141 RchiOBHm_Chr5g0018691
rosa_laevigata	RLG00000032387
rosa_multiflora	Rmu_co8206768.1_g000001 Rmu_sc0000449.1_g000050 Rmu_sc0001609.1_g000029 Rmu_sc0010911.1_g000002 Rmu_sc0025354.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059080 Rroxscaffold_4G00279800 Rroxscaffold_4G00297720 Rroxscaffold_6G00419800
rosa_rugosa	Rorug01G0416400 Rorug01G0416500 Rorug03G0040400 Rorug04G0115100 Rorug05G0046000
rosa_samantha	Rh1AG441000 Rh1BG396700 Rh3DG102700 Rh5AG137000 Rh5BG135800 Rh5CG147700
rosa_wichuraiana	Rw1G038350 Rw3G008300 Rw5G012140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	59
AccII	CGCG	1 cut(s)	440
AccIII	TCCGGA	1 cut(s)	140
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	347
AcsI	RAATTY	1 cut(s)	205
AfaI	GTAC	2 cut(s)	224, 437
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	4 cut(s)	21, 190, 211, 271
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	347
AlwNI	CAGNNNCTG	1 cut(s)	74
Aor13HI	TCCGGA	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	1 cut(s)	205
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	71, 119
AsuHPI	GGTGA	1 cut(s)	214
AvaII	GGWCC	2 cut(s)	71, 119
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	1 cut(s)	436
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BcoDI	GTCTC	1 cut(s)	37
BfmI	CTRYAG	1 cut(s)	61
BfuAI	ACCTGC	1 cut(s)	59
BisI	GCNGC	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	330
Bme18I	GGWCC	2 cut(s)	71, 119
BmgT120I	GGNCC	2 cut(s)	71, 119
BmiI	GGNNCC	1 cut(s)	120
BplI	GAGNNNNNCTC	4 cut(s)	34, 66, 274, 306
BpmI	CTGGAG	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse3DI	GCAATG	1 cut(s)	284
BseAI	TCCGGA	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	2 cut(s)	46, 299
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMI	GCAATG	1 cut(s)	284
BseMII	CTCAG	2 cut(s)	20, 72
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	315
BsgI	GTGCAG	1 cut(s)	399
Bsh1236I	CGCG	1 cut(s)	440
BsiSI	CCGG	2 cut(s)	141, 365
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	132
Bsp13I	TCCGGA	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	1 cut(s)	122
BspCNI	CTCAG	2 cut(s)	21, 73
BspEI	TCCGGA	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	440
BspLI	GGNNCC	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	1 cut(s)	352
BssT1I	CCWWGG	1 cut(s)	303
Bst4CI	ACNGT	3 cut(s)	62, 131, 157
Bst6I	CTCTTC	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	105, 326
BstDEI	CTNAG	4 cut(s)	9, 29, 81, 216
BstF5I	GGATG	2 cut(s)	46, 299
BstFNI	CGCG	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	61
BstUI	CGCG	1 cut(s)	440
BstV1I	GCAGC	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	46, 299
BveI	ACCTGC	1 cut(s)	59
Cac8I	GCNNGC	2 cut(s)	105, 326
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	71, 119
Csp6I	GTAC	2 cut(s)	223, 436
CviAII	CATG	2 cut(s)	115, 125
CviJI	RGCY	4 cut(s)	5, 80, 193, 374
CviKI_1	RGCY	4 cut(s)	5, 80, 193, 374
CviQI	GTAC	2 cut(s)	223, 436
DdeI	CTNAG	4 cut(s)	9, 29, 81, 216
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	303
Eco47I	GGWCC	2 cut(s)	71, 119
EcoO109I	RGGNCCY	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	2 cut(s)	118, 128
FaiI	YATR	5 cut(s)	38, 92, 116, 126, 266
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	2 cut(s)	114, 124
Fnu4HI	GCNGC	1 cut(s)	329
FokI	GGATG	2 cut(s)	33, 286
Fsp4HI	GCNGC	1 cut(s)	329
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	329
GsuI	CTGGAG	1 cut(s)	36
HapII	CCGG	2 cut(s)	141, 365
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	118, 128
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	2 cut(s)	283, 407
HpaII	CCGG	2 cut(s)	141, 365
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	2 cut(s)	223, 411
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	2 cut(s)	141, 211
Hpy8I	GTNNAC	2 cut(s)	223, 411
HpyCH4III	ACNGT	3 cut(s)	62, 131, 157
HpyCH4V	TGCA	2 cut(s)	40, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	249
HpyF3I	CTNAG	4 cut(s)	9, 29, 81, 216
Hsp92II	CATG	2 cut(s)	118, 128
HspAI	GCGC	1 cut(s)	66
Kpn2I	TCCGGA	1 cut(s)	140
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	6 cut(s)	54, 66, 87, 154, 300, 378
Lsp1109I	GCAGC	1 cut(s)	315
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	1 cut(s)	165
MluCI	AATT	1 cut(s)	205
MlyI	GAGTC	2 cut(s)	292, 416
MnlI	CCTC	7 cut(s)	6, 24, 60, 76, 79, 137, 366
MroI	TCCGGA	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	421
MspI	CCGG	2 cut(s)	141, 365
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	1 cut(s)	249
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	2 cut(s)	118, 128
NlaIV	GGNNCC	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	330
PleI	GAGTC	2 cut(s)	291, 415
PpsI	GAGTC	2 cut(s)	291, 415
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	2 cut(s)	71, 119
PspPPI	RGGWCCY	1 cut(s)	71
PstNI	CAGNNNCTG	1 cut(s)	74
RsaI	GTAC	2 cut(s)	224, 437
RsaNI	GTAC	2 cut(s)	223, 436
RseI	CAYNNNNRTG	1 cut(s)	421
SatI	GCNGC	1 cut(s)	329
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	2 cut(s)	71, 119
SchI	GAGTC	2 cut(s)	292, 416
SetI	ASST	6 cut(s)	73, 204, 222, 309, 376, 390
SfcI	CTRYAG	1 cut(s)	61
SinI	GGWCC	2 cut(s)	71, 119
SmiMI	CAYNNNNRTG	1 cut(s)	421
Sse9I	AATT	1 cut(s)	205
SsiI	CCGC	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	3 cut(s)	62, 131, 157
TaqI	TCGA	2 cut(s)	237, 317
TasI	AATT	1 cut(s)	205
TseI	GCWGC	1 cut(s)	328
TspGWI	ACGGA	1 cut(s)	123
VpaK11BI	GGWCC	2 cut(s)	71, 119
XapI	RAATTY	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.