Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001474

Physical Location & Seq

Genomic Coordinates Reverse (-)

41189612 .. 41191702

Gene Structure 2091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00419800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCTTCCAAGCGCATCTTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACTTCCTGCAGCGCCGGACATGTTTCATTGGCAAGCGACGATTATGGGACCCCTGATAGCCCATATGCAGGAGGTGTATTCCTTGTTACCATTCATTTCCCTCCTGACTATCCTTTCAAACCACCTAAGGTTGCATTTAGGACTAAGGTCTTCCACCCGAATATCAATAGCAATGGAAGCATTTGTCTTGATATCCTCAAAGAACAATGGAGTCCAGCCCTTACTATCTCTAAGGTATTGCTCTCAATCTGCTCATTGCTGACTGACCCAAATCCTGATGACCCCCTTGTACCGGAGATTGCCCATATGTATAAAACTGATCGAGCCAAGTATGAGTCGACTGCACGTAGCTGGACTCAGAAATATGCAATGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

143

Amino Acids

15.85

Weight (kDa)

7.71

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	5 - 136	2.6e-45	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08690 AT3G08690 AT3G08700 AT3G08700
fragaria_vesca	FvH4_3g11640 FvH4_6g09540 FvH4_7g15850
malus_domestica	MD01G1075300.v1.1 MD01G1214300.v1.1 MD04G1176600.v1.1 MD07G1144200.v1.1 MD12G1190900.v1.1
prunus_persica	Prupe.2G183100_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1
pyrus_communis	pycom04g15580 pycom07g14260 pycom12g17820 pycom15g33780
rosa_chinensis	RchiOBHm_Chr1g0358671 RchiOBHm_Chr1g0380011 RchiOBHm_Chr3g0460141 RchiOBHm_Chr5g0018691
rosa_laevigata	RLG00000032387
rosa_multiflora	Rmu_co8206768.1_g000001 Rmu_sc0000449.1_g000050 Rmu_sc0001609.1_g000029 Rmu_sc0010911.1_g000002 Rmu_sc0025354.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059080 Rroxscaffold_4G00279800 Rroxscaffold_4G00297720 Rroxscaffold_6G00419800
rosa_rugosa	Rorug01G0416400 Rorug01G0416500 Rorug03G0040400 Rorug04G0115100 Rorug05G0046000
rosa_samantha	Rh1AG441000 Rh1BG396700 Rh3DG102700 Rh5AG137000 Rh5BG135800 Rh5CG147700
rosa_wichuraiana	Rw1G038350 Rw3G008300 Rw5G012140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	392
AclWI	GGATC	2 cut(s)	41, 54
AfaI	GTAC	1 cut(s)	345
AfiI	CCNNNNNNNGG	2 cut(s)	122, 346
AflII	CTTAAG	1 cut(s)	29
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	22, 172
AluBI	AGCT	2 cut(s)	28, 405
AluI	AGCT	2 cut(s)	28, 405
AlwI	GGATC	2 cut(s)	41, 54
ApeKI	GCWGC	1 cut(s)	63
AspLEI	GCGC	2 cut(s)	15, 68
AspS9I	GGNCC	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	102
AxyI	CCTNAGG	1 cut(s)	180
BamHI	GGATCC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	61
BfoI	RGCGCY	1 cut(s)	69
BfrI	CTTAAG	1 cut(s)	29
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	3 cut(s)	48, 103, 104
BmsI	GCATC	1 cut(s)	24
BoxI	GACNNNNGTC	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	196
BsaAI	YACGTR	1 cut(s)	401
BsaWI	WCCGGW	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 346
Bse21I	CCTNAGG	1 cut(s)	180
Bse3DI	GCAATG	3 cut(s)	232, 308, 429
BseLI	CCNNNNNNNGG	2 cut(s)	122, 346
BseMI	GCAATG	3 cut(s)	232, 308, 429
BseMII	CTCAG	1 cut(s)	425
BseXI	GCAGC	1 cut(s)	75
BsgI	GTGCAG	1 cut(s)	381
BsiSI	CCGG	2 cut(s)	69, 347
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	122, 346
BsmFI	GGGAC	1 cut(s)	115
Bsp143I	GATC	2 cut(s)	46, 373
BspCNI	CTCAG	1 cut(s)	424
BspLI	GGNNCC	3 cut(s)	48, 103, 104
BspMAI	CTGCAG	1 cut(s)	65
BspPI	GGATC	2 cut(s)	41, 54
BspTI	CTTAAG	1 cut(s)	29
BsrDI	GCAATG	3 cut(s)	232, 308, 429
BssMI	GATC	2 cut(s)	46, 373
BstAFI	CTTAAG	1 cut(s)	29
BstBAI	YACGTR	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	4 cut(s)	180, 198, 285, 411
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	15, 68
BstKTI	GATC	2 cut(s)	49, 376
BstMBI	GATC	2 cut(s)	46, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	77
BstPAI	GACNNNNGTC	1 cut(s)	200
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
Bsu36I	CCTNAGG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	88
CfoI	GCGC	2 cut(s)	15, 68
Cfr13I	GGNCC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	6 cut(s)	5, 28, 114, 272, 380, 405
CviKI_1	RGCY	6 cut(s)	5, 28, 114, 272, 380, 405
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	4 cut(s)	180, 198, 285, 411
DpnI	GATC	2 cut(s)	48, 375
DpnII	GATC	2 cut(s)	46, 373
Eco32I	GATATC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	102
Eco81I	CCTNAGG	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	102
EcoRV	GATATC	1 cut(s)	247
FaeI	CATG	1 cut(s)	77
FaiI	YATR	9 cut(s)	75, 99, 118, 120, 360, 362, 366, 387, 420
FalI	AAGNNNNNCTT	1 cut(s)	34
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	1 cut(s)	73
FauNDI	CATATG	2 cut(s)	118, 360
FblI	GTMKAC	1 cut(s)	392
Fnu4HI	GCNGC	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	64
GlaI	GCGC	2 cut(s)	14, 67
GluI	GCNGC	1 cut(s)	64
HaeII	RGCGCY	1 cut(s)	69
HapII	CCGG	2 cut(s)	69, 347
HhaI	GCGC	2 cut(s)	15, 68
Hin1II	CATG	1 cut(s)	77
Hin6I	GCGC	2 cut(s)	13, 66
HinP1I	GCGC	2 cut(s)	13, 66
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HinfI	GANTC	3 cut(s)	265, 389, 409
HpaII	CCGG	2 cut(s)	69, 347
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	4 cut(s)	19, 158, 242, 329
Hpy8I	GTNNAC	1 cut(s)	393
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	16, 37
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	6 cut(s)	40, 63, 122, 188, 398, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	4 cut(s)	180, 198, 285, 411
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	1 cut(s)	77
HspAI	GCGC	2 cut(s)	13, 66
KflI	GGGWCCC	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	46, 373
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	9 cut(s)	73, 82, 108, 120, 171, 282, 342, 360, 391
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	1 cut(s)	24
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	2 cut(s)	48, 375
MboI	GATC	2 cut(s)	46, 373
MboII	GAAGA	1 cut(s)	196
MflI	RGATCY	1 cut(s)	46
MlyI	GAGTC	3 cut(s)	274, 398, 403
MnlI	CCTC	4 cut(s)	60, 119, 165, 260
MseI	TTAA	1 cut(s)	30
MspCI	CTTAAG	1 cut(s)	29
MspI	CCGG	2 cut(s)	69, 347
MwoI	GCNNNNNNNGC	1 cut(s)	231
NdeI	CATATG	2 cut(s)	118, 360
NdeII	GATC	2 cut(s)	46, 373
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	3 cut(s)	48, 103, 104
NspI	RCATGY	1 cut(s)	77
PciI	ACATGT	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	65
PleI	GAGTC	3 cut(s)	273, 397, 403
PpsI	GAGTC	3 cut(s)	273, 397, 403
Ppu21I	YACGTR	1 cut(s)	401
PpuMI	RGGWCCY	1 cut(s)	102
PscI	ACATGT	1 cut(s)	73
PshAI	GACNNNNGTC	1 cut(s)	200
Psp5II	RGGWCCY	1 cut(s)	102
PspN4I	GGNNCC	3 cut(s)	48, 103, 104
PspPI	GGNCC	1 cut(s)	102
PspPPI	RGGWCCY	1 cut(s)	102
PstI	CTGCAG	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
SalI	GTCGAC	1 cut(s)	391
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	2 cut(s)	46, 373
Sau96I	GGNCC	1 cut(s)	102
SchI	GAGTC	3 cut(s)	274, 398, 403
SetI	ASST	8 cut(s)	30, 130, 181, 186, 204, 291, 403, 407
SfaNI	GCATC	1 cut(s)	24
SfcI	CTRYAG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	2 cut(s)	376, 392
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	69, 137
Vha464I	CTTAAG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	102
XceI	RCATGY	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.