Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001474

Physical Location & Seq

Genomic Coordinates Forward (+)

6875641 .. 6876576

Gene Structure 936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCCGCGAAGCGCATCTTGAAGGAGCTCAAGGATTTAGAGAGGGATCCTCCAACCAATTGCAGCGCCGGTCCGGTGTCGGCTGACAACATGTACCACTGGCAAGCAACGATTATGGGACCGCCTGATAGCCCATACGCCACCGGCGTGTTCCAGATCAGCATACACTACCCTCCTGATTATCCTTTCAAACCTCCCAAGGTTTCATTCAAGACCAAGGTCTTCCACCCCAATGTCAATAGCAACGGAAGCATATGCCTTGATATCCTCAAAGAACAATGGAGTCCAGCCCTTACTGTCTCTAAGGTGTTGCTCTCGATCTGCTCGTTGTTGACGGATCCGAATCCAGATGACCCCCTCGTGCCGGAAATCGCCCATATGTATAAAACCAATCGAGCCAAGTATGAAGCGACTGCGCGTAGCTGGACTCAGAAGTATGCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04621 ko04624 ko05418 map04013 map04120 map04141 map04621 map04624 map05418

Pfam Domains

Protein Families

UQ_con

Protein Analysis

149

Amino Acids

16.58

Weight (kDa)

8.39

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	5 - 142	8.2e-55	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08690 AT3G08690 AT3G08700 AT3G08700
fragaria_vesca	FvH4_3g11640 FvH4_6g09540 FvH4_7g15850
malus_domestica	MD01G1075300.v1.1 MD01G1214300.v1.1 MD04G1176600.v1.1 MD07G1144200.v1.1 MD12G1190900.v1.1
prunus_persica	Prupe.2G183100_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1
pyrus_communis	pycom04g15580 pycom07g14260 pycom12g17820 pycom15g33780
rosa_chinensis	RchiOBHm_Chr1g0358671 RchiOBHm_Chr1g0380011 RchiOBHm_Chr3g0460141 RchiOBHm_Chr5g0018691
rosa_laevigata	RLG00000032387
rosa_multiflora	Rmu_co8206768.1_g000001 Rmu_sc0000449.1_g000050 Rmu_sc0001609.1_g000029 Rmu_sc0010911.1_g000002 Rmu_sc0025354.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059080 Rroxscaffold_4G00279800 Rroxscaffold_4G00297720 Rroxscaffold_6G00419800
rosa_rugosa	Rorug01G0416400 Rorug01G0416500 Rorug03G0040400 Rorug04G0115100 Rorug05G0046000
rosa_samantha	Rh1AG441000 Rh1BG396700 Rh3DG102700 Rh5AG137000 Rh5BG135800 Rh5CG147700
rosa_wichuraiana	Rw1G038350 Rw3G008300 Rw5G012140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	8, 418
AciI	CCGC	2 cut(s)	6, 122
AclWI	GGATC	4 cut(s)	41, 54, 332, 345
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	364
AflIII	ACRYGT	1 cut(s)	90
AgsI	TTSAA	3 cut(s)	22, 190, 211
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AleI	CACNNNNGTG	1 cut(s)	146
AluBI	AGCT	2 cut(s)	28, 423
AluI	AGCT	2 cut(s)	28, 423
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	4 cut(s)	41, 54, 332, 345
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	63
AspLEI	GCGC	3 cut(s)	15, 68, 418
AspS9I	GGNCC	2 cut(s)	71, 119
AvaII	GGWCC	2 cut(s)	71, 119
BamHI	GGATCC	2 cut(s)	46, 337
BanII	GRGCYC	1 cut(s)	30
BauI	CACGAG	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	304
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	2 cut(s)	6, 64
BlsI	GCNGC	2 cut(s)	7, 65
Bme18I	GGWCC	2 cut(s)	71, 119
BmgT120I	GGNCC	2 cut(s)	71, 119
BmiI	GGNNCC	3 cut(s)	48, 120, 339
BmsI	GCATC	1 cut(s)	24
BoxI	GACNNNNGTC	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	214
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
BpuEI	CTTGAG	1 cut(s)	14
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	198, 216
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse118I	RCCGGY	2 cut(s)	68, 143
Bse1I	ACTGG	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	198, 216
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	75
Bsh1236I	CGCG	2 cut(s)	8, 418
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	4 cut(s)	69, 74, 144, 365
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	4 cut(s)	46, 156, 318, 337
BspACI	CCGC	2 cut(s)	6, 122
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	442
BspFNI	CGCG	2 cut(s)	8, 418
BspLI	GGNNCC	3 cut(s)	48, 120, 339
BspPI	GGATC	4 cut(s)	41, 54, 332, 345
BsrFI	RCCGGY	2 cut(s)	68, 143
BsrI	ACTGG	1 cut(s)	104
BssAI	RCCGGY	2 cut(s)	68, 143
BssECI	CCNNGG	2 cut(s)	198, 216
BssMI	GATC	4 cut(s)	46, 156, 318, 337
BssSI	CACGAG	1 cut(s)	359
BssT1I	CCWWGG	2 cut(s)	198, 216
Bst2BI	CACGAG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	303, 429
BstFNI	CGCG	2 cut(s)	8, 418
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	3 cut(s)	15, 68, 418
BstKTI	GATC	4 cut(s)	49, 159, 321, 340
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	4 cut(s)	46, 156, 318, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	249
BstNSI	RCATGY	1 cut(s)	94
BstPAI	GACNNNNGTC	1 cut(s)	218
BstUI	CGCG	2 cut(s)	8, 418
BstV1I	GCAGC	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	214
BstX2I	RGATCY	2 cut(s)	46, 337
BstYI	RGATCY	2 cut(s)	46, 337
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	105
CfoI	GCGC	3 cut(s)	15, 68, 418
Cfr10I	RCCGGY	2 cut(s)	68, 143
Cfr13I	GGNCC	2 cut(s)	71, 119
CpoI	CGGWCCG	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	94
CspI	CGGWCCG	1 cut(s)	71
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	7 cut(s)	5, 28, 83, 132, 290, 398, 423
CviKI_1	RGCY	7 cut(s)	5, 28, 83, 132, 290, 398, 423
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	2 cut(s)	303, 429
DpnI	GATC	4 cut(s)	48, 158, 320, 339
DpnII	GATC	4 cut(s)	46, 156, 318, 337
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	2 cut(s)	198, 216
Eco24I	GRGCYC	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	71, 119
Eco53kI	GAGCTC	1 cut(s)	28
EcoICRI	GAGCTC	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	265
EcoT14I	CCWWGG	2 cut(s)	198, 216
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	2 cut(s)	198, 216
FaeI	CATG	1 cut(s)	94
FalI	AAGNNNNNCTT	1 cut(s)	34
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	1 cut(s)	90
FauNDI	CATATG	2 cut(s)	254, 378
Fnu4HI	GCNGC	2 cut(s)	6, 64
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	2 cut(s)	6, 64
GlaI	GCGC	3 cut(s)	14, 67, 417
GluI	GCNGC	2 cut(s)	6, 64
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	4 cut(s)	69, 74, 144, 365
HhaI	GCGC	3 cut(s)	15, 68, 418
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	3 cut(s)	13, 66, 416
HinP1I	GCGC	3 cut(s)	13, 66, 416
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HinfI	GANTC	3 cut(s)	283, 343, 427
HpaII	CCGG	4 cut(s)	69, 74, 144, 365
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	2 cut(s)	342, 432
Hpy188III	TCNNGA	6 cut(s)	19, 154, 176, 211, 316, 347
Hpy8I	GTNNAC	1 cut(s)	333
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4V	TGCA	1 cut(s)	63
HpyF10VI	GCNNNNNNNGC	1 cut(s)	249
HpyF3I	CTNAG	2 cut(s)	303, 429
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	3 cut(s)	13, 66, 416
Kzo9I	GATC	4 cut(s)	46, 156, 318, 337
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	1 cut(s)	24
MalI	GATC	4 cut(s)	48, 158, 320, 339
MboI	GATC	4 cut(s)	46, 156, 318, 337
MboII	GAAGA	1 cut(s)	214
MfeI	CAATTG	1 cut(s)	58
MflI	RGATCY	2 cut(s)	46, 337
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	1 cut(s)	58
MlyI	GAGTC	2 cut(s)	292, 421
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	6 cut(s)	36, 60, 183, 204, 278, 368
MseI	TTAA	1 cut(s)	445
MslI	CAYNNNNRTG	2 cut(s)	146, 231
MspI	CCGG	4 cut(s)	69, 74, 144, 365
MunI	CAATTG	1 cut(s)	58
MvnI	CGCG	2 cut(s)	8, 418
MwoI	GCNNNNNNNGC	1 cut(s)	249
NdeI	CATATG	2 cut(s)	254, 378
NdeII	GATC	4 cut(s)	46, 156, 318, 337
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	3 cut(s)	48, 120, 339
NspI	RCATGY	1 cut(s)	94
OliI	CACNNNNGTG	1 cut(s)	146
PciI	ACATGT	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 323
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	2 cut(s)	7, 65
PleI	GAGTC	2 cut(s)	291, 421
PpsI	GAGTC	2 cut(s)	291, 421
PscI	ACATGT	1 cut(s)	90
PshAI	GACNNNNGTC	1 cut(s)	218
Psp124BI	GAGCTC	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	48, 120, 339
PspPI	GGNCC	2 cut(s)	71, 119
PsuI	RGATCY	2 cut(s)	46, 337
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
RseI	CAYNNNNRTG	2 cut(s)	146, 231
Rsr2I	CGGWCCG	1 cut(s)	71
RsrII	CGGWCCG	1 cut(s)	71
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	445
SatI	GCNGC	2 cut(s)	6, 64
Sau3AI	GATC	4 cut(s)	46, 156, 318, 337
Sau96I	GGNCC	2 cut(s)	71, 119
SchI	GAGTC	2 cut(s)	292, 421
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	6 cut(s)	30, 196, 204, 222, 309, 425
SfaNI	GCATC	1 cut(s)	24
SgrAI	CRCCGGYG	1 cut(s)	143
SinI	GGWCC	2 cut(s)	71, 119
SmiMI	CAYNNNNRTG	2 cut(s)	146, 231
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	1 cut(s)	58
SsiI	CCGC	2 cut(s)	6, 122
SstI	GAGCTC	1 cut(s)	30
StyI	CCWWGG	2 cut(s)	198, 216
TaaI	ACNGT	1 cut(s)	298
TaqI	TCGA	2 cut(s)	317, 394
TasI	AATT	1 cut(s)	58
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	1 cut(s)	445
Tru9I	TTAA	1 cut(s)	445
TscAI	CASTG	1 cut(s)	104
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	195, 420
TspGWI	ACGGA	2 cut(s)	261, 350
TspRI	CASTG	1 cut(s)	104
VpaK11BI	GGWCC	2 cut(s)	71, 119
XceI	RCATGY	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.