Prupe.6G296100_v2.0.a1

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001474
Physical Location & Seq
Reverse (-)
27079810 .. 27081952
2143 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G296100.3

Sequence Viewer

Length: 447 bp
ATGGCCTCCAAACGCATCTTGAAAGAGCTTAAGGATTTGCAGAAAGATCCTCCAACTTCTTGCAGCGCCGGTCCTGTGGCTGAGGACATGTTTCACTGGCAAGCTACGATTATGGGACCCCCTGATAGCCCATATGCAGGAGGTGTATTCCTAGTCACCATTCATTTTCCTCCTGATTATCCTTTCAAGCCCCCTAAGGTTGCATTTAGGACTAAGGTCTTCCACCCAAATATCAACAGCAATGGAAGCATTTGTCTTGATATCCTTAAAGAACAATGGAGCCCAGCACTAACTATCTCTAAGGTATTGCTCTCAATTTGCTCACTGTTGACTGACCCTAATCCTGATGACCCTCTTGTGCCGGAGATTGCCCACATGTATAAAACCGATCGAGCCAAGTATGAATCCACTGCACGTAGCTGGACTCAGAAGTATGCAATGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624
Pfam Domains
Protein Families
UQ_con

Protein Analysis

149

Amino Acids

16.52

Weight (kDa)

7.72

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 137
AflII CTTAAG 1 cut(s) 29
AflIII ACRYGT 2 cut(s) 87, 375
AgsI TTSAA 2 cut(s) 22, 187
AluBI AGCT 3 cut(s) 28, 104, 420
AluI AGCT 3 cut(s) 28, 104, 420
AlwI GGATC 1 cut(s) 41
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 71, 116
AsuHPI GGTGA 1 cut(s) 148
AvaII GGWCC 2 cut(s) 71, 116
AxyI CCTNAGG 1 cut(s) 195
BanII GRGCYC 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 211
BbvCI CCTCAGC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 75
BfaI CTAG 1 cut(s) 152
BfoI RGCGCY 1 cut(s) 69
BfrI CTTAAG 1 cut(s) 29
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
Bme18I GGWCC 2 cut(s) 71, 116
BmgT120I GGNCC 2 cut(s) 71, 116
BmiI GGNNCC 3 cut(s) 117, 118, 281
BmsI GCATC 1 cut(s) 24
BoxI GACNNNNGTC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 81
BsaAI YACGTR 1 cut(s) 416
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 101
Bse21I CCTNAGG 1 cut(s) 195
Bse3DI GCAATG 2 cut(s) 247, 444
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 2 cut(s) 247, 444
BseMII CTCAG 2 cut(s) 72, 440
BseNI ACTGG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 75
BseYI CCCAGC 1 cut(s) 283
BsgI GTGCAG 1 cut(s) 396
Bsh1285I CGRYCG 1 cut(s) 391
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 391
BsiSI CCGG 2 cut(s) 69, 362
BslFI GGGAC 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 129
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 2 cut(s) 46, 388
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 73, 439
BspLI GGNNCC 3 cut(s) 117, 118, 281
BspPI GGATC 1 cut(s) 41
BspTI CTTAAG 1 cut(s) 29
BsrDI GCAATG 2 cut(s) 247, 444
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 68
BssMI GATC 2 cut(s) 46, 388
Bst4CI ACNGT 1 cut(s) 327
BstAFI CTTAAG 1 cut(s) 29
BstBAI YACGTR 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 5 cut(s) 81, 195, 213, 300, 426
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 2 cut(s) 49, 391
BstMBI GATC 2 cut(s) 46, 388
BstMCI CGRYCG 1 cut(s) 391
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstNSI RCATGY 2 cut(s) 91, 379
BstPAI GACNNNNGTC 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 75
BstV2I GAAGAC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
Bsu36I CCTNAGG 1 cut(s) 195
BsuRI GGCC 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 3 cut(s) 94, 323, 408
Cac8I GCNNGC 1 cut(s) 102
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 71, 116
CviAII CATG 2 cut(s) 88, 376
CviJI RGCY 9 cut(s) 5, 28, 80, 104, 129, 190, 282, 395, 420
CviKI_1 RGCY 9 cut(s) 5, 28, 80, 104, 129, 190, 282, 395, 420
DdeI CTNAG 5 cut(s) 81, 195, 213, 300, 426
DpnI GATC 2 cut(s) 48, 390
DpnII GATC 2 cut(s) 46, 388
Eco24I GRGCYC 1 cut(s) 284
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 2 cut(s) 71, 116
Eco81I CCTNAGG 1 cut(s) 195
EcoO109I RGGNCCY 1 cut(s) 116
EcoRV GATATC 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 284
FaeI CATG 2 cut(s) 91, 379
FaiI YATR 8 cut(s) 89, 113, 133, 135, 377, 381, 402, 435
FaqI GGGAC 1 cut(s) 129
FatI CATG 2 cut(s) 87, 375
FauNDI CATATG 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 64
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 64
FspBI CTAG 1 cut(s) 152
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 64
GsaI CCCAGC 1 cut(s) 287
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 69, 362
HhaI GCGC 1 cut(s) 68
Hin1II CATG 2 cut(s) 91, 379
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HinfI GANTC 2 cut(s) 404, 424
HpaII CCGG 2 cut(s) 69, 362
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 1 cut(s) 429
Hpy188III TCNNGA 4 cut(s) 19, 173, 257, 344
Hpy8I GTNNAC 1 cut(s) 330
HpyCH4III ACNGT 1 cut(s) 327
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 6 cut(s) 40, 63, 137, 203, 413, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
HpyF3I CTNAG 5 cut(s) 81, 195, 213, 300, 426
HpySE526I ACGT 1 cut(s) 415
Hsp92II CATG 2 cut(s) 91, 379
HspAI GCGC 1 cut(s) 66
KflI GGGWCCC 1 cut(s) 116
Kzo9I GATC 2 cut(s) 46, 388
LmnI GCTCC 1 cut(s) 279
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 1 cut(s) 24
MaeI CTAG 1 cut(s) 152
MaeII ACGT 1 cut(s) 415
MaeIII GTNAC 1 cut(s) 154
MalI GATC 2 cut(s) 48, 390
MboI GATC 2 cut(s) 46, 388
MboII GAAGA 1 cut(s) 211
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 1 cut(s) 315
MlyI GAGTC 1 cut(s) 418
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 6 cut(s) 16, 60, 76, 134, 180, 363
MseI TTAA 2 cut(s) 30, 267
MspCI CTTAAG 1 cut(s) 29
MspI CCGG 2 cut(s) 69, 362
MwoI GCNNNNNNNGC 1 cut(s) 246
NdeI CATATG 1 cut(s) 133
NdeII GATC 2 cut(s) 46, 388
NlaIII CATG 2 cut(s) 91, 379
NlaIV GGNNCC 3 cut(s) 117, 118, 281
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 2 cut(s) 91, 379
PciI ACATGT 2 cut(s) 87, 375
PfeI GAWTC 1 cut(s) 404
PkrI GCNGC 1 cut(s) 65
Ple19I CGATCG 1 cut(s) 391
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
Ppu21I YACGTR 1 cut(s) 416
PpuMI RGGWCCY 1 cut(s) 116
PscI ACATGT 2 cut(s) 87, 375
PshAI GACNNNNGTC 1 cut(s) 215
Psp5II RGGWCCY 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 283
PspN4I GGNNCC 3 cut(s) 117, 118, 281
PspPI GGNCC 2 cut(s) 71, 116
PspPPI RGGWCCY 1 cut(s) 116
PsuI RGATCY 1 cut(s) 46
PvuI CGATCG 1 cut(s) 391
SaqAI TTAA 2 cut(s) 30, 267
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 2 cut(s) 46, 388
Sau96I GGNCC 2 cut(s) 71, 116
SchI GAGTC 1 cut(s) 418
SduI GDGCHC 1 cut(s) 284
SetI ASST 8 cut(s) 30, 106, 145, 201, 219, 306, 418, 422
SfaNI GCATC 1 cut(s) 24
SinI GGWCC 2 cut(s) 71, 116
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 1 cut(s) 315
SspMI CTAG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 327
TaiI ACGT 1 cut(s) 418
TaqI TCGA 1 cut(s) 391
TasI AATT 1 cut(s) 315
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 2 cut(s) 30, 267
Tru9I TTAA 2 cut(s) 30, 267
TscAI CASTG 3 cut(s) 101, 330, 415
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 1 cut(s) 63
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 2 cut(s) 152, 417
TspRI CASTG 3 cut(s) 101, 330, 415
Vha464I CTTAAG 1 cut(s) 29
VpaK11BI GGWCC 2 cut(s) 71, 116
XceI RCATGY 2 cut(s) 91, 379
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.