Rmu_sc0025354.1_g000001

Ubiquitin-conjugating enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025354.1
OG0001474
Physical Location & Seq
Forward (+)
13 .. 369
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025354.1_g000001.1.cds

Sequence Viewer

Length: 357 bp
atgttccgttggcaagcgacgattatgggaccccctgatagcccatacgcaggaggtgtattccatgtcaacgttgacttccctcctgattatcctttcaaacctcccaaggtttcattcaagactcaggtcttccaccccaatgtcaatagcaacggaagcatatgccttgatatcctcaaagaacaatggagtccagccctaactatctctaaggtgctgctatcgatctgctcgttgttgacagacccgaatcctgaagaccccctcgtgccggagattgcccatatgtataaaactgatcgagccaagtatgaagcaactgcgcgtagctggactcagaagtatgcagtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624
Pfam Domains
Protein Families
UQ_con

Protein Analysis

118

Amino Acids

13.31

Weight (kDa)

6.81

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 328
AclI AACGTT 1 cut(s) 72
AcuI CTGAAG 1 cut(s) 279
AfiI CCNNNNNNNGG 2 cut(s) 50, 274
AgsI TTSAA 2 cut(s) 100, 121
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 1 cut(s) 333
AluI AGCT 1 cut(s) 333
ApeKI GCWGC 1 cut(s) 220
AspLEI GCGC 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 29
AvaII GGWCC 1 cut(s) 29
BauI CACGAG 1 cut(s) 269
BbsI GAAGAC 2 cut(s) 124, 267
BbvI GCAGC 1 cut(s) 207
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 2 cut(s) 30, 31
BoxI GACNNNNGTC 1 cut(s) 128
BpiI GAAGAC 2 cut(s) 124, 267
Bsa29I ATCGAT 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 274
BseCI ATCGAT 1 cut(s) 227
BseDI CCNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 50, 274
BseMII CTCAG 2 cut(s) 140, 353
BseXI GCAGC 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 328
BshVI ATCGAT 1 cut(s) 227
BsiSI CCGG 1 cut(s) 275
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 2 cut(s) 50, 274
BsmFI GGGAC 1 cut(s) 42
Bsp143I GATC 2 cut(s) 228, 301
BspCNI CTCAG 2 cut(s) 139, 352
BspDI ATCGAT 1 cut(s) 227
BspFNI CGCG 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 30, 31
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 2 cut(s) 228, 301
BssSI CACGAG 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 3 cut(s) 126, 213, 339
BstFNI CGCG 1 cut(s) 328
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 2 cut(s) 231, 304
BstMBI GATC 2 cut(s) 228, 301
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstPAI GACNNNNGTC 1 cut(s) 128
BstUI CGCG 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 207
BstV2I GAAGAC 2 cut(s) 124, 267
Bsu15I ATCGAT 1 cut(s) 227
BsuTUI ATCGAT 1 cut(s) 227
Cac8I GCNNGC 1 cut(s) 15
CfoI GCGC 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 29
ClaI ATCGAT 1 cut(s) 227
CviAII CATG 1 cut(s) 65
CviJI RGCY 4 cut(s) 42, 200, 308, 333
CviKI_1 RGCY 4 cut(s) 42, 200, 308, 333
DdeI CTNAG 3 cut(s) 126, 213, 339
DpnI GATC 2 cut(s) 230, 303
DpnII GATC 2 cut(s) 228, 301
Eco130I CCWWGG 1 cut(s) 108
Eco32I GATATC 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 279
EcoO109I RGGNCCY 1 cut(s) 29
EcoRV GATATC 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 1 cut(s) 68
FaqI GGGAC 1 cut(s) 42
FatI CATG 1 cut(s) 64
FauNDI CATATG 2 cut(s) 164, 288
Fnu4HI GCNGC 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 221
GlaI GCGC 1 cut(s) 327
GluI GCNGC 1 cut(s) 221
HapII CCGG 1 cut(s) 275
HhaI GCGC 1 cut(s) 328
Hin1II CATG 1 cut(s) 68
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HincII GTYRAC 3 cut(s) 70, 76, 243
HindII GTYRAC 3 cut(s) 70, 76, 243
HinfI GANTC 4 cut(s) 124, 193, 253, 337
HpaII CCGG 1 cut(s) 275
Hpy166II GTNNAC 3 cut(s) 70, 76, 243
Hpy188I TCNGA 1 cut(s) 342
Hpy188III TCNNGA 3 cut(s) 86, 121, 257
Hpy8I GTNNAC 3 cut(s) 70, 76, 243
Hpy99I CGWCG 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 1 cut(s) 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 3 cut(s) 126, 213, 339
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 1 cut(s) 68
HspAI GCGC 1 cut(s) 326
KflI GGGWCCC 1 cut(s) 29
Kzo9I GATC 2 cut(s) 228, 301
LpnPI CCDG 8 cut(s) 36, 48, 99, 113, 210, 270, 288, 319
Lsp1109I GCAGC 1 cut(s) 207
MaeII ACGT 1 cut(s) 72
MalI GATC 2 cut(s) 230, 303
MboI GATC 2 cut(s) 228, 301
MboII GAAGA 2 cut(s) 124, 272
MlyI GAGTC 3 cut(s) 118, 202, 331
MnlI CCTC 5 cut(s) 47, 93, 114, 188, 278
MseI TTAA 1 cut(s) 355
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 1 cut(s) 275
MvnI CGCG 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeI CATATG 2 cut(s) 164, 288
NdeII GATC 2 cut(s) 228, 301
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 2 cut(s) 30, 31
PcsI WCGNNNNNNNCGW 1 cut(s) 233
PfeI GAWTC 1 cut(s) 253
PkrI GCNGC 1 cut(s) 222
PleI GAGTC 3 cut(s) 118, 201, 331
PpsI GAGTC 3 cut(s) 118, 201, 331
PpuMI RGGWCCY 1 cut(s) 29
PshAI GACNNNNGTC 1 cut(s) 128
Psp1406I AACGTT 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 30, 31
PspPI GGNCC 1 cut(s) 29
PspPPI RGGWCCY 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 355
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 2 cut(s) 228, 301
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 3 cut(s) 118, 202, 331
SetI ASST 7 cut(s) 58, 75, 106, 114, 132, 219, 335
SinI GGWCC 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 141
StyI CCWWGG 1 cut(s) 108
TaiI ACGT 1 cut(s) 75
TaqI TCGA 2 cut(s) 227, 304
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 1 cut(s) 355
Tru9I TTAA 1 cut(s) 355
TseI GCWGC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 105, 330
TspGWI ACGGA 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.