Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001474

Physical Location & Seq

Genomic Coordinates Forward (+)

30761565 .. 30764677

Gene Structure 3113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1214300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCGTCCAAGCGGATCTTGAAGGAACTGAAAGATCTGCAGAAGGATCCACCTACGTCCTGCAGCGCCGGTCCCGTCGCCGAAGACATGTTCCACTGGCAGGCAACAATAATGGGTCCTCCAGACAGTCCATATGCTGGGGGTGTTTTCCTAGTTACTATTCATTTTCCTCCAGATTATCCGTTTAAACCACCAAAGGTGGCATTTAGAACGAAAGTATTCCACCCAAACATAAACAGCAACGGAAGTATTTGCCTTGACATCTTGAAGGAGCAGTGGAGTCCCGCTCTAACTATTTCCAAGGTGTTGCTTTCCATCTGTTCTCTGTTGACGGACCCAAACCCGGATGATCCATTGGTGCCGGAGATTGCTCACATGTACAAGACAGACAGGAATAAATACGAGACGACGGCGAGGAGCTGGACCCAGAAATACGCCATGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

149

Amino Acids

16.57

Weight (kDa)

7.72

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	5 - 141	3.5e-55	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08690 AT3G08690 AT3G08700 AT3G08700
fragaria_vesca	FvH4_3g11640 FvH4_6g09540 FvH4_7g15850
malus_domestica	MD01G1075300.v1.1 MD01G1214300.v1.1 MD04G1176600.v1.1 MD07G1144200.v1.1 MD12G1190900.v1.1
prunus_persica	Prupe.2G183100_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1
pyrus_communis	pycom04g15580 pycom07g14260 pycom12g17820 pycom15g33780
rosa_chinensis	RchiOBHm_Chr1g0358671 RchiOBHm_Chr1g0380011 RchiOBHm_Chr3g0460141 RchiOBHm_Chr5g0018691
rosa_laevigata	RLG00000032387
rosa_multiflora	Rmu_co8206768.1_g000001 Rmu_sc0000449.1_g000050 Rmu_sc0001609.1_g000029 Rmu_sc0010911.1_g000002 Rmu_sc0025354.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059080 Rroxscaffold_4G00279800 Rroxscaffold_4G00297720 Rroxscaffold_6G00419800
rosa_rugosa	Rorug01G0416400 Rorug01G0416500 Rorug03G0040400 Rorug04G0115100 Rorug05G0046000
rosa_samantha	Rh1AG441000 Rh1BG396700 Rh3DG102700 Rh5AG137000 Rh5BG135800 Rh5CG147700
rosa_wichuraiana	Rw1G038350 Rw3G008300 Rw5G012140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	358
AccB7I	CCANNNNNTGG	1 cut(s)	137
AccBSI	CCGCTC	1 cut(s)	287
AciI	CCGC	2 cut(s)	13, 285
AclWI	GGATC	4 cut(s)	23, 41, 54, 344
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	3 cut(s)	100, 137, 343
AflIII	ACRYGT	2 cut(s)	87, 375
AgsI	TTSAA	2 cut(s)	22, 268
AluBI	AGCT	1 cut(s)	420
AluI	AGCT	1 cut(s)	420
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	4 cut(s)	23, 41, 54, 344
ApeKI	GCWGC	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	4 cut(s)	71, 116, 334, 423
AsuC2I	CCSGG	1 cut(s)	344
AvaII	GGWCC	4 cut(s)	71, 116, 334, 423
BamHI	GGATCC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	358
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	1 cut(s)	323
BceAI	ACGGC	1 cut(s)	426
BcnI	CCSGG	1 cut(s)	344
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	2 cut(s)	38, 61
BfoI	RGCGCY	1 cut(s)	69
BglII	AGATCT	1 cut(s)	34
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	344
Bme18I	GGWCC	4 cut(s)	71, 116, 334, 423
BmgT120I	GGNCC	4 cut(s)	71, 116, 334, 423
BmiI	GGNNCC	6 cut(s)	48, 73, 117, 336, 360, 425
BmrFI	CCNGG	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	90
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
BpmI	CTGGAG	2 cut(s)	105, 156
BpuMI	CCSGG	1 cut(s)	344
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	300, 438
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 137, 343
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	300, 438
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	3 cut(s)	100, 137, 343
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	430
BseXI	GCAGC	1 cut(s)	75
BseYI	CCCAGC	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	358
BsiSI	CCGG	3 cut(s)	69, 344, 362
BslFI	GGGAC	2 cut(s)	57, 267
BslI	CCNNNNNNNGG	3 cut(s)	100, 137, 343
BsmAI	GTCTC	1 cut(s)	398
BsmBI	CGTCTC	1 cut(s)	398
BsmFI	GGGAC	2 cut(s)	57, 267
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	4 cut(s)	15, 34, 46, 349
Bsp19I	CCATGG	1 cut(s)	438
BspACI	CCGC	2 cut(s)	13, 285
BspLI	GGNNCC	6 cut(s)	48, 73, 117, 336, 360, 425
BspMAI	CTGCAG	2 cut(s)	42, 65
BspPI	GGATC	4 cut(s)	23, 41, 54, 344
BspT107I	GGYRCC	1 cut(s)	358
BsrBI	CCGCTC	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	300, 438
BssMI	GATC	4 cut(s)	15, 34, 46, 349
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	300, 438
Bst4CI	ACNGT	1 cut(s)	128
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	438
BstF5I	GGATG	1 cut(s)	352
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	4 cut(s)	18, 37, 49, 352
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	4 cut(s)	15, 34, 46, 349
BstNSI	RCATGY	2 cut(s)	91, 379
BstSCI	CCNGG	1 cut(s)	342
BstSFI	CTRYAG	2 cut(s)	38, 61
BstV1I	GCAGC	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	3 cut(s)	15, 34, 46
BstYI	RGATCY	3 cut(s)	15, 34, 46
BtgI	CCRYGG	1 cut(s)	438
BtsCI	GGATG	1 cut(s)	352
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	2 cut(s)	94, 281
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	4 cut(s)	71, 116, 334, 423
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	3 cut(s)	88, 376, 439
CviJI	RGCY	2 cut(s)	420, 444
CviKI_1	RGCY	2 cut(s)	420, 444
CviQI	GTAC	1 cut(s)	379
DpnI	GATC	4 cut(s)	17, 36, 48, 351
DpnII	GATC	4 cut(s)	15, 34, 46, 349
DraI	TTTAAA	1 cut(s)	187
Eco130I	CCWWGG	2 cut(s)	300, 438
Eco47I	GGWCC	4 cut(s)	71, 116, 334, 423
EcoO109I	RGGNCCY	1 cut(s)	116
EcoT14I	CCWWGG	2 cut(s)	300, 438
ErhI	CCWWGG	2 cut(s)	300, 438
Esp3I	CGTCTC	1 cut(s)	398
FaeI	CATG	3 cut(s)	91, 379, 442
FaiI	YATR	6 cut(s)	89, 133, 135, 233, 377, 440
FalI	AAGNNNNNCTT	1 cut(s)	34
FaqI	GGGAC	2 cut(s)	57, 267
FatI	CATG	3 cut(s)	87, 375, 438
FauI	CCCGC	1 cut(s)	292
FauNDI	CATATG	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	64
GsaI	CCCAGC	1 cut(s)	141
GsuI	CTGGAG	2 cut(s)	105, 156
HaeII	RGCGCY	1 cut(s)	69
HapII	CCGG	3 cut(s)	69, 344, 362
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	91, 379, 442
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	1 cut(s)	280
HpaII	CCGG	3 cut(s)	69, 344, 362
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188III	TCNNGA	4 cut(s)	19, 122, 173, 265
Hpy8I	GTNNAC	1 cut(s)	330
Hpy99I	CGWCG	2 cut(s)	80, 412
HpyAV	CCTTC	3 cut(s)	16, 37, 262
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	40, 63
HpySE526I	ACGT	1 cut(s)	56
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	91, 379, 442
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	4 cut(s)	15, 34, 46, 349
LmnI	GCTCC	2 cut(s)	271, 417
Lsp1109I	GCAGC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	4 cut(s)	17, 36, 48, 351
MbiI	CCGCTC	1 cut(s)	287
MboI	GATC	4 cut(s)	15, 34, 46, 349
MboII	GAAGA	1 cut(s)	95
MflI	RGATCY	3 cut(s)	15, 34, 46
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	3 cut(s)	129, 180, 408
MroXI	GAANNNNTTC	1 cut(s)	218
MseI	TTAA	1 cut(s)	186
MspI	CCGG	3 cut(s)	69, 344, 362
MspR9I	CCNGG	1 cut(s)	344
MssI	GTTTAAAC	1 cut(s)	187
NciI	CCSGG	1 cut(s)	344
NcoI	CCATGG	1 cut(s)	438
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	4 cut(s)	15, 34, 46, 349
NlaIII	CATG	3 cut(s)	91, 379, 442
NlaIV	GGNNCC	6 cut(s)	48, 73, 117, 336, 360, 425
NspI	RCATGY	2 cut(s)	91, 379
PciI	ACATGT	2 cut(s)	87, 375
PdmI	GAANNNNTTC	1 cut(s)	218
PflMI	CCANNNNNTGG	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	65
PleI	GAGTC	1 cut(s)	288
PmeI	GTTTAAAC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	288
PpuMI	RGGWCCY	1 cut(s)	116
PscI	ACATGT	2 cut(s)	87, 375
Psp5II	RGGWCCY	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	137
PspN4I	GGNNCC	6 cut(s)	48, 73, 117, 336, 360, 425
PspPI	GGNCC	4 cut(s)	71, 116, 334, 423
PspPPI	RGGWCCY	1 cut(s)	116
PstI	CTGCAG	2 cut(s)	42, 65
PsuI	RGATCY	3 cut(s)	15, 34, 46
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	4 cut(s)	15, 34, 46, 349
Sau96I	GGNCC	4 cut(s)	71, 116, 334, 423
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	1 cut(s)	344
SetI	ASST	5 cut(s)	55, 59, 201, 306, 422
SfcI	CTRYAG	2 cut(s)	38, 61
SinI	GGWCC	4 cut(s)	71, 116, 334, 423
SsiI	CCGC	2 cut(s)	13, 285
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	342
StyI	CCWWGG	2 cut(s)	300, 438
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	1 cut(s)	59
TatI	WGTACW	1 cut(s)	378
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	2 cut(s)	101, 281
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	152
TspGWI	ACGGA	3 cut(s)	171, 258, 347
TspRI	CASTG	2 cut(s)	101, 281
Van91I	CCANNNNNTGG	1 cut(s)	137
VpaK11BI	GGWCC	4 cut(s)	71, 116, 334, 423
XceI	RCATGY	2 cut(s)	91, 379
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.