Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001474

Physical Location & Seq

Genomic Coordinates Forward (+)

29157186 .. 29161436

Gene Structure 4251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G306300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTGATTTTGGATATTGGAAATAGGGTTTCGCAAATGGCCTCCAAACGGATCTTGAAGGAACTCAAAGATTTGCAGAAGGATCCTCCTACATCATGCAGCGCCGGTCCCGTTGCTGAAGACATGTTCCACTGGCAGGCAACAATAATGGGTCCCCCAGACAGTCCTTATGCTGGGGGTGTTTTCCTAGTTACTATTCATTTTCCTCCAGATTATCCCTTTAAGCCACCGAAGGTGGCATTTAGAACAAAAGTATTCCACCCAAACATAAACAGCAATGGGAGCATTTGCCTTGACATCTTGAAGGAGCAGTGGAGTCCTGCTCTAACTATTTCCAAGGTTTTGCTTTCCATCTGTTCTCTGTTGACGGATCCGAATCCCGATGATCCATTGGTGCCGGAGATTGCCCACATGTACAAGACAGACAGGAATAAATATGAGACGACAGCAAGGAGCTGGACCCAGAAATATGCCATGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

161

Amino Acids

17.9

Weight (kDa)

7.72

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08690 AT3G08690 AT3G08700 AT3G08700
fragaria_vesca	FvH4_3g11640 FvH4_6g09540 FvH4_7g15850
malus_domestica	MD01G1075300.v1.1 MD01G1214300.v1.1 MD04G1176600.v1.1 MD07G1144200.v1.1 MD12G1190900.v1.1
prunus_persica	Prupe.2G183100_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1
pyrus_communis	pycom04g15580 pycom07g14260 pycom12g17820 pycom15g33780
rosa_chinensis	RchiOBHm_Chr1g0358671 RchiOBHm_Chr1g0380011 RchiOBHm_Chr3g0460141 RchiOBHm_Chr5g0018691
rosa_laevigata	RLG00000032387
rosa_multiflora	Rmu_co8206768.1_g000001 Rmu_sc0000449.1_g000050 Rmu_sc0001609.1_g000029 Rmu_sc0010911.1_g000002 Rmu_sc0025354.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059080 Rroxscaffold_4G00279800 Rroxscaffold_4G00297720 Rroxscaffold_6G00419800
rosa_rugosa	Rorug01G0416400 Rorug01G0416500 Rorug03G0040400 Rorug04G0115100 Rorug05G0046000
rosa_samantha	Rh1AG441000 Rh1BG396700 Rh3DG102700 Rh5AG137000 Rh5BG135800 Rh5CG147700
rosa_wichuraiana	Rw1G038350 Rw3G008300 Rw5G012140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	394
AclWI	GGATC	6 cut(s)	59, 77, 90, 365, 378, 380
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	3 cut(s)	48, 136, 173
AflIII	ACRYGT	2 cut(s)	123, 411
AgsI	TTSAA	2 cut(s)	58, 304
AluBI	AGCT	1 cut(s)	456
AluI	AGCT	1 cut(s)	456
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	6 cut(s)	59, 77, 90, 365, 378, 380
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	3 cut(s)	107, 152, 459
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	3 cut(s)	107, 152, 459
BamHI	GGATCC	2 cut(s)	82, 370
BanI	GGYRCC	1 cut(s)	394
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	1 cut(s)	188
BfoI	RGCGCY	1 cut(s)	105
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
Bme18I	GGWCC	3 cut(s)	107, 152, 459
BmgT120I	GGNCC	3 cut(s)	107, 152, 459
BmiI	GGNNCC	7 cut(s)	84, 109, 153, 154, 372, 396, 461
BpiI	GAAGAC	1 cut(s)	126
BplI	GAGNNNNNCTC	2 cut(s)	307, 339
BpmI	CTGGAG	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	336, 474
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 136, 173
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	137
Bse3DI	GCAATG	1 cut(s)	283
Bse8I	GATNNNNATC	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	336, 474
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	3 cut(s)	48, 136, 173
BseMI	GCAATG	1 cut(s)	283
BseNI	ACTGG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	111
BseYI	CCCAGC	1 cut(s)	173
BshFI	GGCC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	394
BsiSI	CCGG	2 cut(s)	105, 398
BslFI	GGGAC	2 cut(s)	93, 138
BslI	CCNNNNNNNGG	3 cut(s)	48, 136, 173
BsmAI	GTCTC	1 cut(s)	434
BsmBI	CGTCTC	1 cut(s)	434
BsmFI	GGGAC	2 cut(s)	93, 138
BsnI	GGCC	1 cut(s)	41
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	4 cut(s)	51, 82, 370, 385
Bsp19I	CCATGG	1 cut(s)	474
BspANI	GGCC	1 cut(s)	41
BspLI	GGNNCC	7 cut(s)	84, 109, 153, 154, 372, 396, 461
BspPI	GGATC	6 cut(s)	59, 77, 90, 365, 378, 380
BspT107I	GGYRCC	1 cut(s)	394
BsrDI	GCAATG	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	104
BsrGI	TGTACA	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	2 cut(s)	336, 474
BssMI	GATC	4 cut(s)	51, 82, 370, 385
BssT1I	CCWWGG	2 cut(s)	336, 474
Bst4CI	ACNGT	1 cut(s)	164
BstAUI	TGTACA	1 cut(s)	414
BstC8I	GCNNGC	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	474
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	4 cut(s)	54, 85, 373, 388
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	4 cut(s)	51, 82, 370, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstNSI	RCATGY	2 cut(s)	127, 415
BstV1I	GCAGC	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	3 cut(s)	51, 82, 370
BstYI	RGATCY	3 cut(s)	51, 82, 370
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	474
BtsI	GCAGTG	1 cut(s)	317
BtsIMutI	CAGTG	2 cut(s)	130, 317
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	3 cut(s)	107, 152, 459
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	4 cut(s)	96, 124, 412, 475
CviJI	RGCY	4 cut(s)	41, 226, 456, 480
CviKI_1	RGCY	4 cut(s)	41, 226, 456, 480
CviQI	GTAC	1 cut(s)	415
DpnI	GATC	4 cut(s)	53, 84, 372, 387
DpnII	GATC	4 cut(s)	51, 82, 370, 385
Eco130I	CCWWGG	2 cut(s)	336, 474
Eco47I	GGWCC	3 cut(s)	107, 152, 459
Eco57I	CTGAAG	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	152
EcoT14I	CCWWGG	2 cut(s)	336, 474
ErhI	CCWWGG	2 cut(s)	336, 474
Esp3I	CGTCTC	1 cut(s)	434
FaeI	CATG	4 cut(s)	99, 127, 415, 478
FaiI	YATR	8 cut(s)	97, 125, 171, 269, 413, 438, 471, 476
FaqI	GGGAC	2 cut(s)	93, 138
FatI	CATG	4 cut(s)	95, 123, 411, 474
Fnu4HI	GCNGC	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	100
FspBI	CTAG	1 cut(s)	188
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	1 cut(s)	100
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	2 cut(s)	105, 398
HhaI	GCGC	1 cut(s)	104
Hin1II	CATG	4 cut(s)	99, 127, 415, 478
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	2 cut(s)	316, 376
HpaII	CCGG	2 cut(s)	105, 398
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	4 cut(s)	55, 209, 301, 380
Hpy8I	GTNNAC	1 cut(s)	366
HpyAV	CCTTC	4 cut(s)	52, 73, 226, 298
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4V	TGCA	2 cut(s)	76, 99
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
Hsp92II	CATG	4 cut(s)	99, 127, 415, 478
HspAI	GCGC	1 cut(s)	102
KflI	GGGWCCC	1 cut(s)	152
Kzo9I	GATC	4 cut(s)	51, 82, 370, 385
LmnI	GCTCC	3 cut(s)	282, 307, 453
Lsp1109I	GCAGC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	4 cut(s)	53, 84, 372, 387
MboI	GATC	4 cut(s)	51, 82, 370, 385
MboII	GAAGA	1 cut(s)	131
MflI	RGATCY	3 cut(s)	51, 82, 370
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	3 cut(s)	52, 96, 216
MseI	TTAA	1 cut(s)	222
MspI	CCGG	2 cut(s)	105, 398
MwoI	GCNNNNNNNGC	1 cut(s)	282
NcoI	CCATGG	1 cut(s)	474
NdeII	GATC	4 cut(s)	51, 82, 370, 385
NlaIII	CATG	4 cut(s)	99, 127, 415, 478
NlaIV	GGNNCC	7 cut(s)	84, 109, 153, 154, 372, 396, 461
NspI	RCATGY	2 cut(s)	127, 415
PciI	ACATGT	2 cut(s)	123, 411
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	101
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
PpuMI	RGGWCCY	1 cut(s)	152
PscI	ACATGT	2 cut(s)	123, 411
Psp5II	RGGWCCY	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	173
PspN4I	GGNNCC	7 cut(s)	84, 109, 153, 154, 372, 396, 461
PspPI	GGNCC	3 cut(s)	107, 152, 459
PspPPI	RGGWCCY	1 cut(s)	152
PsuI	RGATCY	3 cut(s)	51, 82, 370
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	1 cut(s)	100
Sau3AI	GATC	4 cut(s)	51, 82, 370, 385
Sau96I	GGNCC	3 cut(s)	107, 152, 459
SchI	GAGTC	1 cut(s)	325
SetI	ASST	3 cut(s)	237, 342, 458
SinI	GGWCC	3 cut(s)	107, 152, 459
SspMI	CTAG	1 cut(s)	188
StyI	CCWWGG	2 cut(s)	336, 474
TaaI	ACNGT	1 cut(s)	164
TatI	WGTACW	1 cut(s)	414
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	2 cut(s)	137, 317
TseI	GCWGC	1 cut(s)	99
TspDTI	ATGAA	1 cut(s)	188
TspGWI	ACGGA	2 cut(s)	64, 383
TspRI	CASTG	2 cut(s)	137, 317
VpaK11BI	GGWCC	3 cut(s)	107, 152, 459
XceI	RCATGY	2 cut(s)	127, 415
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.