Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001474

Physical Location & Seq

Genomic Coordinates Forward (+)

65906358 .. 65908979

Gene Structure 2622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G038350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCGTCGAAGCGGATCCTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCTACGTCATGCAGCGCAGGTCCTGTTGCTGAAGACATGTTTCATTGGCAAGCAACAATTATGGGTCCCCCAGATAGTCCTTATGCTGGTGGTGTTTTTCTAGTTACTATTCATTTTCCGCCAGATTATCCATTTAAGCCACCAAAGGTGGCATTTAGAACAAAGGTATTCCACCCAAACATTAACAGCAATGGGAGCATTTGCCTCGACATCTTGAAGGAGCAATGGAGTCCTGCTCTAACCATTTCCAAGGTGTTGCTTTCAATCTGTTCACTGTTGACGGATCCAAATCCCGATGATCCATTGGTGCCAGAGATTGCTCACATGTACAAGACAGACAGGAACAAGTATGAGACAACAGCAAGAAGCTGGACCCAAAAATATGCCATGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

148

Amino Acids

16.57

Weight (kDa)

7.72

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	5 - 141	3.5e-55	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08690 AT3G08690 AT3G08700 AT3G08700
fragaria_vesca	FvH4_3g11640 FvH4_6g09540 FvH4_7g15850
malus_domestica	MD01G1075300.v1.1 MD01G1214300.v1.1 MD04G1176600.v1.1 MD07G1144200.v1.1 MD12G1190900.v1.1
prunus_persica	Prupe.2G183100_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1
pyrus_communis	pycom04g15580 pycom07g14260 pycom12g17820 pycom15g33780
rosa_chinensis	RchiOBHm_Chr1g0358671 RchiOBHm_Chr1g0380011 RchiOBHm_Chr3g0460141 RchiOBHm_Chr5g0018691
rosa_laevigata	RLG00000032387
rosa_multiflora	Rmu_co8206768.1_g000001 Rmu_sc0000449.1_g000050 Rmu_sc0001609.1_g000029 Rmu_sc0010911.1_g000002 Rmu_sc0025354.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059080 Rroxscaffold_4G00279800 Rroxscaffold_4G00297720 Rroxscaffold_6G00419800
rosa_rugosa	Rorug01G0416400 Rorug01G0416500 Rorug03G0040400 Rorug04G0115100 Rorug05G0046000
rosa_samantha	Rh1AG441000 Rh1BG396700 Rh3DG102700 Rh5AG137000 Rh5BG135800 Rh5CG147700
rosa_wichuraiana	Rw1G038350 Rw3G008300 Rw5G012140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	358
AciI	CCGC	2 cut(s)	13, 170
AclWI	GGATC	7 cut(s)	10, 23, 41, 54, 329, 342, 344
AcuI	CTGAAG	2 cut(s)	41, 102
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflII	CTTAAG	1 cut(s)	29
AflIII	ACRYGT	2 cut(s)	87, 375
AgsI	TTSAA	2 cut(s)	268, 315
AluBI	AGCT	2 cut(s)	28, 420
AluI	AGCT	2 cut(s)	28, 420
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	7 cut(s)	10, 23, 41, 54, 329, 342, 344
AlwNI	CAGNNNCTG	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	3 cut(s)	71, 116, 423
AvaII	GGWCC	3 cut(s)	71, 116, 423
BamHI	GGATCC	3 cut(s)	15, 46, 334
BanI	GGYRCC	1 cut(s)	358
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	75
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	1 cut(s)	152
BfrI	CTTAAG	1 cut(s)	29
BfuAI	ACCTGC	1 cut(s)	59
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
Bme18I	GGWCC	3 cut(s)	71, 116, 423
BmgT120I	GGNCC	3 cut(s)	71, 116, 423
BmiI	GGNNCC	7 cut(s)	17, 48, 117, 118, 336, 360, 425
BpiI	GAAGAC	1 cut(s)	90
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
BsaBI	GATNNNNATC	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	300, 438
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse3DI	GCAATG	2 cut(s)	247, 281
Bse8I	GATNNNNATC	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	300, 438
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	2 cut(s)	247, 281
BseXI	GCAGC	1 cut(s)	75
BshNI	GGYRCC	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	102
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	4 cut(s)	15, 46, 334, 349
Bsp19I	CCATGG	1 cut(s)	438
BspACI	CCGC	2 cut(s)	13, 170
BspLI	GGNNCC	7 cut(s)	17, 48, 117, 118, 336, 360, 425
BspMI	ACCTGC	1 cut(s)	59
BspPI	GGATC	7 cut(s)	10, 23, 41, 54, 329, 342, 344
BspT107I	GGYRCC	1 cut(s)	358
BspTI	CTTAAG	1 cut(s)	29
BsrDI	GCAATG	2 cut(s)	247, 281
BsrGI	TGTACA	1 cut(s)	378
BssECI	CCNNGG	2 cut(s)	300, 438
BssMI	GATC	4 cut(s)	15, 46, 334, 349
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	300, 438
Bst4CI	ACNGT	1 cut(s)	327
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	438
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	4 cut(s)	18, 49, 337, 352
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	4 cut(s)	15, 46, 334, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNSI	RCATGY	2 cut(s)	91, 379
BstV1I	GCAGC	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	3 cut(s)	15, 46, 334
BstYI	RGATCY	3 cut(s)	15, 46, 334
BtgI	CCRYGG	1 cut(s)	438
BtsIMutI	CAGTG	1 cut(s)	323
BveI	ACCTGC	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	3 cut(s)	71, 116, 423
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	4 cut(s)	60, 88, 376, 439
CviJI	RGCY	4 cut(s)	28, 190, 420, 444
CviKI_1	RGCY	4 cut(s)	28, 190, 420, 444
CviQI	GTAC	1 cut(s)	379
DpnI	GATC	4 cut(s)	17, 48, 336, 351
DpnII	GATC	4 cut(s)	15, 46, 334, 349
EciI	GGCGGA	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	300, 438
Eco47I	GGWCC	3 cut(s)	71, 116, 423
Eco57I	CTGAAG	2 cut(s)	41, 102
EcoO109I	RGGNCCY	2 cut(s)	71, 116
EcoT14I	CCWWGG	2 cut(s)	300, 438
ErhI	CCWWGG	2 cut(s)	300, 438
FaeI	CATG	4 cut(s)	63, 91, 379, 442
FaiI	YATR	8 cut(s)	61, 89, 113, 135, 377, 402, 435, 440
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	4 cut(s)	59, 87, 375, 438
Fnu4HI	GCNGC	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	63, 91, 379, 442
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	1 cut(s)	280
Hpy166II	GTNNAC	2 cut(s)	323, 330
Hpy188III	TCNNGA	3 cut(s)	19, 265, 344
Hpy8I	GTNNAC	2 cut(s)	323, 330
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	16, 37, 262
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	40, 63
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	56
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	63, 91, 379, 442
HspAI	GCGC	1 cut(s)	66
KflI	GGGWCCC	1 cut(s)	116
Kzo9I	GATC	4 cut(s)	15, 46, 334, 349
LmnI	GCTCC	3 cut(s)	25, 246, 271
Lsp1109I	GCAGC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	4 cut(s)	17, 48, 336, 351
MboI	GATC	4 cut(s)	15, 46, 334, 349
MboII	GAAGA	1 cut(s)	95
MflI	RGATCY	3 cut(s)	15, 46, 334
MluCI	AATT	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	2 cut(s)	60, 266
MseI	TTAA	3 cut(s)	30, 186, 234
MspCI	CTTAAG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	246
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	4 cut(s)	15, 46, 334, 349
NlaIII	CATG	4 cut(s)	63, 91, 379, 442
NlaIV	GGNNCC	7 cut(s)	17, 48, 117, 118, 336, 360, 425
NspI	RCATGY	2 cut(s)	91, 379
PciI	ACATGT	2 cut(s)	87, 375
PkrI	GCNGC	1 cut(s)	65
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PpuMI	RGGWCCY	2 cut(s)	71, 116
PscI	ACATGT	2 cut(s)	87, 375
Psp5II	RGGWCCY	2 cut(s)	71, 116
PspN4I	GGNNCC	7 cut(s)	17, 48, 117, 118, 336, 360, 425
PspPI	GGNCC	3 cut(s)	71, 116, 423
PspPPI	RGGWCCY	2 cut(s)	71, 116
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	3 cut(s)	15, 46, 334
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SaqAI	TTAA	3 cut(s)	30, 186, 234
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	4 cut(s)	15, 46, 334, 349
Sau96I	GGNCC	3 cut(s)	71, 116, 423
SchI	GAGTC	1 cut(s)	289
SetI	ASST	7 cut(s)	30, 59, 73, 201, 219, 306, 422
SinI	GGWCC	3 cut(s)	71, 116, 423
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	2 cut(s)	13, 170
SspMI	CTAG	1 cut(s)	152
StyI	CCWWGG	2 cut(s)	300, 438
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	2 cut(s)	8, 258
TasI	AATT	1 cut(s)	108
TatI	WGTACW	1 cut(s)	378
Tru1I	TTAA	3 cut(s)	30, 186, 234
Tru9I	TTAA	3 cut(s)	30, 186, 234
TscAI	CASTG	1 cut(s)	330
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	83, 152
TspGWI	ACGGA	1 cut(s)	347
TspRI	CASTG	1 cut(s)	330
Vha464I	CTTAAG	1 cut(s)	29
VpaK11BI	GGWCC	3 cut(s)	71, 116, 423
XceI	RCATGY	2 cut(s)	91, 379
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.