Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001474

Physical Location & Seq

Genomic Coordinates Reverse (-)

81077454 .. 81079545

Gene Structure 2092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00059080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCCTCGAAGCGCATCTCAAAGGAGCTCATGGATTTACAGAGGGATCCTCCAACCAATTGCAGCGCCGGTCCGGTGGCGGCTAACATGTTCCGTTGGCAAGCGACGATTATGGGACCCCCTGATAGCCCATACGCAGGAGGTGTATTCCACGTCAACGTTGACTTCCCTCCTGATTATCCTTTCAAACCTCCCAAGGTTTCATTCAAGACTAAGGTCTTCCACCCCAATGTCAATAGCAACGGAAGCATATGCCTTGATATCCTCAAAGAACAATGGAGTCCAGCCCTTACTATCTCTAAGGTGTTGCTATCGATCTGCTCGTTGTTGACAGACCCGAATCCTGAAGACCCCCTCGTGCCGGAGATTGCCCATATGTATAAAACTGATCGAGCCAAGTATGAAGCAACAGCGTGTAGCTGGACTCAGAAGTATGCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

147

Amino Acids

16.34

Weight (kDa)

7.66

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	5 - 139	2.3e-55	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08690 AT3G08690 AT3G08700 AT3G08700
fragaria_vesca	FvH4_3g11640 FvH4_6g09540 FvH4_7g15850
malus_domestica	MD01G1075300.v1.1 MD01G1214300.v1.1 MD04G1176600.v1.1 MD07G1144200.v1.1 MD12G1190900.v1.1
prunus_persica	Prupe.2G183100_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.2G306300_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1 Prupe.6G296100_v2.0.a1
pyrus_communis	pycom04g15580 pycom07g14260 pycom12g17820 pycom15g33780
rosa_chinensis	RchiOBHm_Chr1g0358671 RchiOBHm_Chr1g0380011 RchiOBHm_Chr3g0460141 RchiOBHm_Chr5g0018691
rosa_laevigata	RLG00000032387
rosa_multiflora	Rmu_co8206768.1_g000001 Rmu_sc0000449.1_g000050 Rmu_sc0001609.1_g000029 Rmu_sc0010911.1_g000002 Rmu_sc0025354.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059080 Rroxscaffold_4G00279800 Rroxscaffold_4G00297720 Rroxscaffold_6G00419800
rosa_rugosa	Rorug01G0416400 Rorug01G0416500 Rorug03G0040400 Rorug04G0115100 Rorug05G0046000
rosa_samantha	Rh1AG441000 Rh1BG396700 Rh3DG102700 Rh5AG137000 Rh5BG135800 Rh5CG147700
rosa_wichuraiana	Rw1G038350 Rw3G008300 Rw5G012140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	80
AclI	AACGTT	1 cut(s)	159
AclWI	GGATC	2 cut(s)	41, 54
AcuI	CTGAAG	1 cut(s)	366
AfiI	CCNNNNNNNGG	2 cut(s)	137, 361
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	187, 208
AjiI	CACGTC	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	2 cut(s)	28, 420
AluI	AGCT	2 cut(s)	28, 420
Alw21I	GWGCWC	1 cut(s)	30
AlwI	GGATC	2 cut(s)	41, 54
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	63
AspLEI	GCGC	2 cut(s)	15, 68
AspS9I	GGNCC	2 cut(s)	71, 116
AvaII	GGWCC	2 cut(s)	71, 116
BamHI	GGATCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	30
BauI	CACGAG	1 cut(s)	356
BbsI	GAAGAC	2 cut(s)	211, 354
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	2 cut(s)	64, 81
BlsI	GCNGC	2 cut(s)	65, 82
Bme18I	GGWCC	2 cut(s)	71, 116
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	2 cut(s)	71, 116
BmiI	GGNNCC	3 cut(s)	48, 117, 118
BmsI	GCATC	1 cut(s)	24
BoxI	GACNNNNGTC	1 cut(s)	215
BpiI	GAAGAC	2 cut(s)	211, 354
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
Bsa29I	ATCGAT	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 361
Bse118I	RCCGGY	1 cut(s)	68
BseCI	ATCGAT	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	195
BseLI	CCNNNNNNNGG	2 cut(s)	137, 361
BseMII	CTCAG	1 cut(s)	440
BseXI	GCAGC	1 cut(s)	75
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	314
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	3 cut(s)	69, 74, 362
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	2 cut(s)	137, 361
BsmFI	GGGAC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	3 cut(s)	46, 315, 388
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	439
BspDI	ATCGAT	1 cut(s)	314
BspLI	GGNNCC	3 cut(s)	48, 117, 118
BspPI	GGATC	2 cut(s)	41, 54
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	3 cut(s)	46, 315, 388
BssSI	CACGAG	1 cut(s)	356
BssT1I	CCWWGG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	3 cut(s)	213, 300, 426
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	15, 68
BstKTI	GATC	3 cut(s)	49, 318, 391
BstMBI	GATC	3 cut(s)	46, 315, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	91
BstPAI	GACNNNNGTC	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	75
BstV2I	GAAGAC	2 cut(s)	211, 354
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	314
BtrI	CACGTC	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	2 cut(s)	15, 68
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	71, 116
ClaI	ATCGAT	1 cut(s)	314
CpoI	CGGWCCG	1 cut(s)	71
CspI	CGGWCCG	1 cut(s)	71
CviAII	CATG	2 cut(s)	31, 88
CviJI	RGCY	7 cut(s)	5, 28, 83, 129, 287, 395, 420
CviKI_1	RGCY	7 cut(s)	5, 28, 83, 129, 287, 395, 420
DdeI	CTNAG	3 cut(s)	213, 300, 426
DpnI	GATC	3 cut(s)	48, 317, 390
DpnII	GATC	3 cut(s)	46, 315, 388
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	2 cut(s)	71, 116
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	366
EcoICRI	GAGCTC	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRV	GATATC	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	2 cut(s)	34, 91
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	2 cut(s)	30, 87
FauNDI	CATATG	2 cut(s)	251, 375
Fnu4HI	GCNGC	2 cut(s)	64, 81
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	2 cut(s)	64, 81
GlaI	GCGC	2 cut(s)	14, 67
GluI	GCNGC	2 cut(s)	64, 81
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	69, 74, 362
HhaI	GCGC	2 cut(s)	15, 68
Hin1II	CATG	2 cut(s)	34, 91
Hin6I	GCGC	2 cut(s)	13, 66
HinP1I	GCGC	2 cut(s)	13, 66
HincII	GTYRAC	3 cut(s)	157, 163, 330
HindII	GTYRAC	3 cut(s)	157, 163, 330
HinfI	GANTC	3 cut(s)	280, 340, 424
HpaII	CCGG	3 cut(s)	69, 74, 362
Hpy166II	GTNNAC	3 cut(s)	157, 163, 330
Hpy188I	TCNGA	1 cut(s)	429
Hpy188III	TCNNGA	3 cut(s)	173, 208, 344
Hpy8I	GTNNAC	3 cut(s)	157, 163, 330
Hpy99I	CGWCG	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	153, 159
HpyCH4V	TGCA	2 cut(s)	63, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpyF3I	CTNAG	3 cut(s)	213, 300, 426
HpySE526I	ACGT	2 cut(s)	153, 159
Hsp92II	CATG	2 cut(s)	34, 91
HspAI	GCGC	2 cut(s)	13, 66
KflI	GGGWCCC	1 cut(s)	116
Kzo9I	GATC	3 cut(s)	46, 315, 388
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	9 cut(s)	82, 87, 123, 135, 186, 297, 357, 375, 406
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	1 cut(s)	24
MaeII	ACGT	2 cut(s)	153, 159
MalI	GATC	3 cut(s)	48, 317, 390
MboI	GATC	3 cut(s)	46, 315, 388
MboII	GAAGA	2 cut(s)	211, 359
MfeI	CAATTG	1 cut(s)	58
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	1 cut(s)	58
MlyI	GAGTC	2 cut(s)	289, 418
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	8 cut(s)	16, 36, 60, 134, 180, 201, 275, 365
MseI	TTAA	1 cut(s)	442
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	3 cut(s)	69, 74, 362
MunI	CAATTG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	246
NdeI	CATATG	2 cut(s)	251, 375
NdeII	GATC	3 cut(s)	46, 315, 388
NlaIII	CATG	2 cut(s)	34, 91
NlaIV	GGNNCC	3 cut(s)	48, 117, 118
NspI	RCATGY	1 cut(s)	91
PciI	ACATGT	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	340
PkrI	GCNGC	2 cut(s)	65, 82
PleI	GAGTC	2 cut(s)	288, 418
PpsI	GAGTC	2 cut(s)	288, 418
PpuMI	RGGWCCY	1 cut(s)	116
PscI	ACATGT	1 cut(s)	87
PshAI	GACNNNNGTC	1 cut(s)	215
Psp124BI	GAGCTC	1 cut(s)	30
Psp1406I	AACGTT	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	116
PspN4I	GGNNCC	3 cut(s)	48, 117, 118
PspPI	GGNCC	2 cut(s)	71, 116
PspPPI	RGGWCCY	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	228
Rsr2I	CGGWCCG	1 cut(s)	71
RsrII	CGGWCCG	1 cut(s)	71
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	442
SatI	GCNGC	2 cut(s)	64, 81
Sau3AI	GATC	3 cut(s)	46, 315, 388
Sau96I	GGNCC	2 cut(s)	71, 116
SchI	GAGTC	2 cut(s)	289, 418
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	9 cut(s)	30, 145, 156, 162, 193, 201, 219, 306, 422
SfaNI	GCATC	1 cut(s)	24
SinI	GGWCC	2 cut(s)	71, 116
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	1 cut(s)	58
SsiI	CCGC	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	195
TaiI	ACGT	2 cut(s)	156, 162
TaqI	TCGA	3 cut(s)	8, 314, 391
TasI	AATT	1 cut(s)	58
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	1 cut(s)	442
Tru9I	TTAA	1 cut(s)	442
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	192, 417
TspGWI	ACGGA	2 cut(s)	83, 258
VpaK11BI	GGWCC	2 cut(s)	71, 116
XceI	RCATGY	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.