Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005419

Physical Location & Seq

Genomic Coordinates Forward (+)

3442237 .. 3443680

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10985.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCGCGTACTCACCGGAGGTGTCTCTCCGTCTTCTTCCTCCTTCGAATTCGTACCTCTCTCCGTCGTTTCCTTCGGATCTACCGTAATCGCGGAAGGCTGCGACGCCGCGACATCGATTTCTTGGATCCACGCTTGGACTGTAGCGAATGGGATAATCACACAGGTGAGGGAGTACTCTAACACTTCTCTCACCGTCACACGGATCGGTAACGTTGTTGCTGGACGACGCTCCGCTGAGATTGCGCCTCCGTCGCATTGTTCCTCCGTGTGGGAAAGCCAATTCTCGGGTCGGGCTGGTAAACCCGTACCCGGTTTGGTTCTGGCGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002238 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009624 GO:0010033 GO:0010035 GO:0010150 GO:0010193 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0090693 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WI12

Protein Analysis

110

Amino Acids

11.46

Weight (kDa)

7.86

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WI12	PF07107	1 - 110	1.1e-49	Wound-induced protein WI12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10985
fragaria_vesca	FvH4_3g39920
malus_domestica	MD01G1160900.v1.1 MD03G1057800.v1.1 MD04G1079700.v1.1 MD07G1228900.v1.1 MD11G1060200.v1.1
prunus_persica	Prupe.2G258900_v2.0.a1 Prupe.6G046200_v2.0.a1
pyrus_communis	pycom07g20710
rosa_chinensis	RchiOBHm_Chr5g0071891
rosa_laevigata	RLG00000026965 RLG00000036261
rosa_multiflora	Rmu_sc0000809.1_g000024 Rmu_sc0002149.1_g000013 Rmu_sc0029638.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009270 Rroxscaffold_4G00285700
rosa_rugosa	Rorug01G0363800 Rorug05G0415500
rosa_samantha	Rh1AG373900 Rh1BG337300 Rh1CG350600 Rh1DG368300 Rh5BG491400 Rh5CG515300 Rh5DG502900
rosa_wichuraiana	Rw1G032890 Rw5G043820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	6, 92, 110
AciI	CCGC	3 cut(s)	92, 108, 234
AclI	AACGTT	1 cut(s)	213
AclWI	GGATC	4 cut(s)	85, 121, 134, 212
AcsI	RAATTY	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	4 cut(s)	9, 54, 176, 309
AfiI	CCNNNNNNNGG	4 cut(s)	201, 270, 286, 311
AleI	CACNNNNGTG	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	4 cut(s)	85, 121, 134, 212
Ama87I	CYCGRG	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	99
ApoI	RAATTY	1 cut(s)	47
AspLEI	GCGC	2 cut(s)	6, 247
AsuC2I	CCSGG	1 cut(s)	312
AsuHPI	GGTGA	3 cut(s)	4, 178, 184
AsuII	TTCGAA	1 cut(s)	45
AvaI	CYCGRG	1 cut(s)	286
BamHI	GGATCC	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	28
BfmI	CTRYAG	1 cut(s)	141
BisI	GCNGC	2 cut(s)	100, 108
BlsI	GCNGC	2 cut(s)	101, 109
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	312
BmeT110I	CYCGRG	1 cut(s)	286
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	24
Bpu14I	TTCGAA	1 cut(s)	45
BpuMI	CCSGG	1 cut(s)	312
Bsa29I	ATCGAT	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	4 cut(s)	201, 270, 286, 311
BseCI	ATCGAT	1 cut(s)	116
BseLI	CCNNNNNNNGG	4 cut(s)	201, 270, 286, 311
BseMII	CTCAG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	86
Bsh1236I	CGCG	3 cut(s)	6, 92, 110
BshVI	ATCGAT	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	286
BsiSI	CCGG	2 cut(s)	15, 312
BslI	CCNNNNNNNGG	4 cut(s)	201, 270, 286, 311
BsmAI	GTCTC	1 cut(s)	28
BsoBI	CYCGRG	1 cut(s)	286
Bsp119I	TTCGAA	1 cut(s)	45
Bsp143I	GATC	3 cut(s)	77, 126, 204
BspACI	CCGC	3 cut(s)	92, 108, 234
BspCNI	CTCAG	1 cut(s)	229
BspDI	ATCGAT	1 cut(s)	116
BspFNI	CGCG	3 cut(s)	6, 92, 110
BspLI	GGNNCC	1 cut(s)	128
BspPI	GGATC	4 cut(s)	85, 121, 134, 212
BspT104I	TTCGAA	1 cut(s)	45
BssMI	GATC	3 cut(s)	77, 126, 204
BssNI	GRCGYC	1 cut(s)	105
Bst4CI	ACNGT	3 cut(s)	85, 142, 196
BstACI	GRCGYC	1 cut(s)	105
BstBI	TTCGAA	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	237
BstFNI	CGCG	3 cut(s)	6, 92, 110
BstHHI	GCGC	2 cut(s)	6, 247
BstKTI	GATC	3 cut(s)	80, 129, 207
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	3 cut(s)	77, 126, 204
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 253
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	141
BstUI	CGCG	3 cut(s)	6, 92, 110
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	2 cut(s)	77, 126
BstYI	RGATCY	2 cut(s)	77, 126
Bsu15I	ATCGAT	1 cut(s)	116
BsuTUI	ATCGAT	1 cut(s)	116
CfoI	GCGC	2 cut(s)	6, 247
ClaI	ATCGAT	1 cut(s)	116
CseI	GACGC	2 cut(s)	113, 237
Csp6I	GTAC	4 cut(s)	8, 53, 175, 308
CviJI	RGCY	3 cut(s)	99, 279, 296
CviKI_1	RGCY	3 cut(s)	99, 279, 296
CviQI	GTAC	4 cut(s)	8, 53, 175, 308
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	3 cut(s)	79, 128, 206
DpnII	GATC	3 cut(s)	77, 126, 204
Eco88I	CYCGRG	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	47
Fnu4HI	GCNGC	2 cut(s)	100, 108
Fsp4HI	GCNGC	2 cut(s)	100, 108
GlaI	GCGC	2 cut(s)	5, 246
GluI	GCNGC	2 cut(s)	100, 108
HapII	CCGG	2 cut(s)	15, 312
HgaI	GACGC	2 cut(s)	113, 237
HhaI	GCGC	2 cut(s)	6, 247
Hin1I	GRCGYC	1 cut(s)	105
Hin6I	GCGC	2 cut(s)	4, 245
HinP1I	GCGC	2 cut(s)	4, 245
HpaII	CCGG	2 cut(s)	15, 312
HphI	GGTGA	3 cut(s)	4, 178, 184
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	302
Hpy99I	CGWCG	4 cut(s)	68, 107, 231, 256
HpyAV	CCTTC	3 cut(s)	52, 82, 89
HpyCH4III	ACNGT	3 cut(s)	85, 142, 196
HpyCH4IV	ACGT	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 253
HpyF3I	CTNAG	1 cut(s)	237
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	105
HspAI	GCGC	2 cut(s)	4, 245
Kzo9I	GATC	3 cut(s)	77, 126, 204
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	6 cut(s)	28, 149, 207, 282, 308, 325
Lsp1109I	GCAGC	1 cut(s)	86
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	196, 209
MalI	GATC	3 cut(s)	79, 128, 206
MboI	GATC	3 cut(s)	77, 126, 204
MboII	GAAGA	2 cut(s)	24, 27
MflI	RGATCY	2 cut(s)	77, 126
MluCI	AATT	2 cut(s)	47, 281
MnlI	CCTC	6 cut(s)	11, 49, 66, 162, 258, 274
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	2 cut(s)	15, 312
MspR9I	CCNGG	1 cut(s)	312
MvnI	CGCG	3 cut(s)	6, 92, 110
MwoI	GCNNNNNNNGC	2 cut(s)	242, 253
NciI	CCSGG	1 cut(s)	312
NdeII	GATC	3 cut(s)	77, 126, 204
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	196
NspV	TTCGAA	1 cut(s)	45
OliI	CACNNNNGTG	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PkrI	GCNGC	2 cut(s)	101, 109
Psp1406I	AACGTT	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	128
PsuI	RGATCY	2 cut(s)	77, 126
RsaI	GTAC	4 cut(s)	9, 54, 176, 309
RsaNI	GTAC	4 cut(s)	8, 53, 175, 308
RseI	CAYNNNNRTG	1 cut(s)	164
SatI	GCNGC	2 cut(s)	100, 108
Sau3AI	GATC	3 cut(s)	77, 126, 204
ScaI	AGTACT	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	312
SetI	ASST	4 cut(s)	22, 58, 168, 216
SfcI	CTRYAG	1 cut(s)	141
SfuI	TTCGAA	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	47, 281
SsiI	CCGC	3 cut(s)	92, 108, 234
StyD4I	CCNGG	1 cut(s)	310
TaaI	ACNGT	3 cut(s)	85, 142, 196
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	2 cut(s)	45, 116
TasI	AATT	2 cut(s)	47, 281
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	1 cut(s)	110
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	99
Tsp45I	GTSAC	1 cut(s)	196
TspGWI	ACGGA	5 cut(s)	18, 52, 217, 240, 256
XapI	RAATTY	1 cut(s)	47
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.