Rh5CG515300

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005419
Physical Location & Seq
Reverse (-)
71951860 .. 71954006
2147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG515300.1

Sequence Viewer

Length: 705 bp
ATGATGGCGAGCCAAAGGACTTTTGGATCGGCGAAGGAGGGCAGCGGTGGTGGTTGGAAGGAGTGGGATCCGGGTAGAGGGTTGAGTTTGTTCCCTTTCTCTTACGGTGGTCTTCGCTGGTCGAATCATCCCTGCGATGATGGCACGTTGTGCAGCTTCCACATTCAAAGGCCATCATTTCCAGAACTCAAACCTCAACAACTCAGAGCTCCAAAACTGGCTAACCCTCGAGAATGTGGCCTGGAGGGAGAAACGAAAGGAGACTTGGAGTCTCGCAACAAGCGAGCCGTGACGGCTCTGTACGACGCCTTCAACTCCAAAGACGTTGATGTTGTTCACCTCCTCCTCGCGCCCTACCTAGAGTGGTGGTTCCATGGCCCCCCTACTCATCAGCATTTGAACCGCCTCCTCACCGGTGCGCCGCCGTACGACTCGTCGTTCATATTCCTTCCTCTGTCGATTGTTGCATTCGGATCAATGGTGGTGGCTGAGGGATACGAGGAAGGTCATTCGGTGTCGTGGGTGCACGCGTGGACCGTCACAGATGGGATAATTACCCAAGTGAGGGAGTACTACAACACGTCCGTCACGGTTACGAGGTTAATCTCACCGGAAACTACATCACGGTCAGGTAGTTGCCAGAGTGTTTGGGAGAGTAAGCTCTCTGATAATAAGTCTGTACCTGGCCTCGTATTGGCCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

234

Amino Acids

25.96

Weight (kDa)

6.23

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WI12 PF07107 135 - 234 4.3e-37 Wound-induced protein WI12
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 350, 530
AciI CCGC 3 cut(s) 45, 403, 422
AclWI GGATC 4 cut(s) 34, 62, 75, 481
AcyI GRCGYC 1 cut(s) 306
AdeI CACNNNGTG 1 cut(s) 150
AfaI GTAC 4 cut(s) 302, 428, 572, 681
AfiI CCNNNNNNNGG 4 cut(s) 77, 564, 565, 694
AflIII ACRYGT 2 cut(s) 528, 579
AgeI ACCGGT 1 cut(s) 413
AgsI TTSAA 3 cut(s) 167, 313, 400
AhdI GACNNNNNGTC 1 cut(s) 268
AjiI CACGTC 1 cut(s) 582
AjnI CCWGG 2 cut(s) 240, 682
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 3 cut(s) 156, 209, 661
AluI AGCT 3 cut(s) 156, 209, 661
Alw21I GWGCWC 2 cut(s) 211, 528
Alw26I GTCTC 2 cut(s) 255, 276
Alw44I GTGCAC 1 cut(s) 524
AlwI GGATC 4 cut(s) 34, 62, 75, 481
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 5 cut(s) 170, 238, 376, 685, 696
ApaLI GTGCAC 1 cut(s) 524
ApeKI GCWGC 2 cut(s) 42, 153
AsiGI ACCGGT 1 cut(s) 413
AspLEI GCGC 2 cut(s) 352, 421
AspS9I GGNCC 3 cut(s) 377, 534, 697
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 3 cut(s) 329, 403, 600
AvaI CYCGRG 1 cut(s) 228
AvaII GGWCC 1 cut(s) 534
BaeGI GKGCMC 1 cut(s) 528
BamHI GGATCC 1 cut(s) 67
BanII GRGCYC 1 cut(s) 211
BarI GAAGNNNNNNTAC 2 cut(s) 293, 325
BbsI GAAGAC 1 cut(s) 104
Bbv12I GWGCWC 2 cut(s) 211, 528
BbvCI CCTCAGC 1 cut(s) 489
BbvI GCAGC 2 cut(s) 54, 165
BccI CCATC 3 cut(s) 134, 181, 539
BceAI ACGGC 3 cut(s) 272, 309, 409
BciT130I CCWGG 2 cut(s) 242, 684
BciVI GTATCC 1 cut(s) 488
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 2 cut(s) 255, 276
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 701
BfuI GTATCC 1 cut(s) 488
BglI GCCNNNNNGGC 1 cut(s) 293
BisI GCNGC 3 cut(s) 43, 154, 422
BlsI GCNGC 3 cut(s) 44, 155, 423
BmcAI AGTACT 1 cut(s) 572
Bme1390I CCNGG 3 cut(s) 72, 242, 684
Bme18I GGWCC 1 cut(s) 534
BmeRI GACNNNNNGTC 1 cut(s) 268
BmeT110I CYCGRG 1 cut(s) 228
BmgBI CACGTC 1 cut(s) 582
BmgT120I GGNCC 3 cut(s) 377, 534, 697
BmiI GGNNCC 3 cut(s) 69, 371, 379
BmrFI CCNGG 3 cut(s) 72, 242, 684
BpiI GAAGAC 1 cut(s) 104
BpmI CTGGAG 1 cut(s) 263
Bpu10I CCTNAGC 1 cut(s) 489
BpuMI CCSGG 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 373
BsaWI WCCGGW 2 cut(s) 413, 610
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 564, 565, 694
Bse118I RCCGGY 1 cut(s) 413
Bse1I ACTGG 1 cut(s) 222
BseBI CCWGG 2 cut(s) 242, 684
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 4 cut(s) 77, 564, 565, 694
BseMII CTCAG 2 cut(s) 217, 480
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 3 cut(s) 332, 335, 398
BseSI GKGCMC 1 cut(s) 528
BseXI GCAGC 2 cut(s) 54, 165
BsgI GTGCAG 1 cut(s) 172
Bsh1236I CGCG 2 cut(s) 350, 530
BshFI GGCC 5 cut(s) 172, 240, 378, 687, 698
BshTI ACCGGT 1 cut(s) 413
BsiHKAI GWGCWC 2 cut(s) 211, 528
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 3 cut(s) 71, 414, 611
BsiWI CGTACG 1 cut(s) 426
BslI CCNNNNNNNGG 4 cut(s) 77, 564, 565, 694
BsmAI GTCTC 2 cut(s) 255, 276
BsmI GAATGC 1 cut(s) 467
BsnI GGCC 5 cut(s) 172, 240, 378, 687, 698
BsoBI CYCGRG 1 cut(s) 228
Bsp1286I GDGCHC 2 cut(s) 211, 528
Bsp143I GATC 3 cut(s) 26, 67, 473
Bsp19I CCATGG 1 cut(s) 373
BspACI CCGC 3 cut(s) 45, 403, 422
BspANI GGCC 5 cut(s) 172, 240, 378, 687, 698
BspCNI CTCAG 2 cut(s) 216, 481
BspFNI CGCG 2 cut(s) 350, 530
BspLI GGNNCC 3 cut(s) 69, 371, 379
BspPI GGATC 4 cut(s) 34, 62, 75, 481
BsrFI RCCGGY 1 cut(s) 413
BsrI ACTGG 1 cut(s) 222
BssAI RCCGGY 1 cut(s) 413
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 3 cut(s) 26, 67, 473
BssNI GRCGYC 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 373
Bst2UI CCWGG 2 cut(s) 242, 684
Bst4CI ACNGT 4 cut(s) 107, 538, 592, 627
BstACI GRCGYC 1 cut(s) 306
BstAPI GCANNNNNTGC 1 cut(s) 150
BstC8I GCNNGC 3 cut(s) 10, 285, 528
BstDEI CTNAG 2 cut(s) 203, 489
BstDSI CCRYGG 1 cut(s) 373
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 2 cut(s) 350, 530
BstHHI GCGC 2 cut(s) 352, 421
BstKTI GATC 3 cut(s) 29, 70, 476
BstMAI GTCTC 2 cut(s) 255, 276
BstMBI GATC 3 cut(s) 26, 67, 473
BstMWI GCNNNNNNNGC 3 cut(s) 141, 150, 293
BstNI CCWGG 2 cut(s) 242, 684
BstSCI CCNGG 3 cut(s) 70, 240, 682
BstSFI CTRYAG 1 cut(s) 701
BstSLI GKGCMC 1 cut(s) 528
BstUI CGCG 2 cut(s) 350, 530
BstV1I GCAGC 2 cut(s) 54, 165
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BsuI GTATCC 1 cut(s) 488
BsuRI GGCC 5 cut(s) 172, 240, 378, 687, 698
BtgI CCRYGG 1 cut(s) 373
BtgZI GCGATG 1 cut(s) 150
BtrI CACGTC 1 cut(s) 582
BtsCI GGATG 1 cut(s) 127
Cac8I GCNNGC 3 cut(s) 10, 285, 528
CfoI GCGC 2 cut(s) 352, 421
Cfr10I RCCGGY 1 cut(s) 413
Cfr13I GGNCC 3 cut(s) 377, 534, 697
CseI GACGC 1 cut(s) 314
Csp6I GTAC 4 cut(s) 301, 427, 571, 680
CspAI ACCGGT 1 cut(s) 413
CspCI CAANNNNNGTGG 2 cut(s) 465, 500
CviAII CATG 1 cut(s) 374
CviQI GTAC 4 cut(s) 301, 427, 571, 680
DdeI CTNAG 2 cut(s) 203, 489
DpnI GATC 3 cut(s) 28, 69, 475
DpnII GATC 3 cut(s) 26, 67, 473
DraIII CACNNNGTG 1 cut(s) 150
DriI GACNNNNNGTC 1 cut(s) 268
Eam1105I GACNNNNNGTC 1 cut(s) 268
Ecl136II GAGCTC 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 373
Eco24I GRGCYC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 534
Eco53kI GAGCTC 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 228
EcoICRI GAGCTC 1 cut(s) 209
EcoRII CCWGG 2 cut(s) 240, 682
EcoT14I CCWWGG 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 1 cut(s) 377
FaiI YATR 3 cut(s) 375, 443, 703
FatI CATG 1 cut(s) 373
Fnu4HI GCNGC 3 cut(s) 43, 154, 422
FokI GGATG 1 cut(s) 114
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 3 cut(s) 43, 154, 422
FspBI CTAG 1 cut(s) 359
GlaI GCGC 2 cut(s) 351, 420
GluI GCNGC 3 cut(s) 43, 154, 422
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 5 cut(s) 172, 240, 378, 687, 698
HapII CCGG 3 cut(s) 71, 414, 611
HgaI GACGC 1 cut(s) 314
HhaI GCGC 2 cut(s) 352, 421
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 1 cut(s) 377
Hin6I GCGC 2 cut(s) 350, 419
HinP1I GCGC 2 cut(s) 350, 419
HinfI GANTC 3 cut(s) 124, 269, 431
HpaII CCGG 3 cut(s) 71, 414, 611
HphI GGTGA 3 cut(s) 329, 403, 600
Hpy166II GTNNAC 3 cut(s) 337, 526, 534
Hpy188I TCNGA 3 cut(s) 206, 473, 667
Hpy188III TCNNGA 2 cut(s) 182, 230
Hpy8I GTNNAC 3 cut(s) 337, 526, 534
Hpy99I CGWCG 2 cut(s) 308, 439
HpyAV CCTTC 5 cut(s) 28, 52, 319, 458, 497
HpyCH4III ACNGT 4 cut(s) 107, 538, 592, 627
HpyCH4IV ACGT 3 cut(s) 146, 324, 581
HpyCH4V TGCA 3 cut(s) 153, 467, 526
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 150, 293
HpyF3I CTNAG 2 cut(s) 203, 489
HpySE526I ACGT 3 cut(s) 146, 324, 581
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 1 cut(s) 377
HspAI GCGC 2 cut(s) 350, 419
Kzo9I GATC 3 cut(s) 26, 67, 473
LmnI GCTCC 1 cut(s) 214
Lsp1109I GCAGC 2 cut(s) 54, 165
MaeI CTAG 1 cut(s) 359
MaeII ACGT 3 cut(s) 146, 324, 581
MaeIII GTNAC 4 cut(s) 289, 538, 586, 592
MalI GATC 3 cut(s) 28, 69, 475
MboI GATC 3 cut(s) 26, 67, 473
MboII GAAGA 1 cut(s) 104
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 2 cut(s) 211, 528
MluCI AATT 1 cut(s) 552
MluI ACGCGT 1 cut(s) 528
MlyI GAGTC 2 cut(s) 278, 425
MmeI TCCRAC 1 cut(s) 35
MseI TTAA 1 cut(s) 602
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 3 cut(s) 71, 414, 611
MspR9I CCNGG 3 cut(s) 72, 242, 684
Mva1269I GAATGC 1 cut(s) 467
MvaI CCWGG 2 cut(s) 242, 684
MvnI CGCG 2 cut(s) 350, 530
MwoI GCNNNNNNNGC 3 cut(s) 141, 150, 293
NciI CCSGG 1 cut(s) 72
NcoI CCATGG 1 cut(s) 373
NdeII GATC 3 cut(s) 26, 67, 473
NlaIII CATG 1 cut(s) 377
NlaIV GGNNCC 3 cut(s) 69, 371, 379
NmuCI GTSAC 3 cut(s) 289, 538, 586
PaeR7I CTCGAG 1 cut(s) 228
PcsI WCGNNNNNNNCGW 2 cut(s) 280, 534
PctI GAATGC 1 cut(s) 467
PfeI GAWTC 1 cut(s) 124
Pfl23II CGTACG 1 cut(s) 426
PinAI ACCGGT 1 cut(s) 413
PkrI GCNGC 3 cut(s) 44, 155, 423
PleI GAGTC 2 cut(s) 277, 425
PpsI GAGTC 2 cut(s) 277, 425
Psp124BI GAGCTC 1 cut(s) 211
Psp6I CCWGG 2 cut(s) 240, 682
PspGI CCWGG 2 cut(s) 240, 682
PspLI CGTACG 1 cut(s) 426
PspN4I GGNNCC 3 cut(s) 69, 371, 379
PspPI GGNCC 3 cut(s) 377, 534, 697
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 4 cut(s) 302, 428, 572, 681
RsaNI GTAC 4 cut(s) 301, 427, 571, 680
SacI GAGCTC 1 cut(s) 211
SaqAI TTAA 1 cut(s) 602
SatI GCNGC 3 cut(s) 43, 154, 422
Sau3AI GATC 3 cut(s) 26, 67, 473
Sau96I GGNCC 3 cut(s) 377, 534, 697
ScaI AGTACT 1 cut(s) 572
SchI GAGTC 2 cut(s) 278, 425
ScrFI CCNGG 3 cut(s) 72, 242, 684
SduI GDGCHC 2 cut(s) 211, 528
SfcI CTRYAG 1 cut(s) 701
Sfr274I CTCGAG 1 cut(s) 228
SgrAI CRCCGGYG 1 cut(s) 413
SinI GGWCC 1 cut(s) 534
SlaI CTCGAG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
Sse9I AATT 1 cut(s) 552
SsiI CCGC 3 cut(s) 45, 403, 422
SspMI CTAG 1 cut(s) 359
SstI GAGCTC 1 cut(s) 211
StyD4I CCNGG 3 cut(s) 70, 240, 682
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 4 cut(s) 107, 538, 592, 627
TaiI ACGT 3 cut(s) 149, 327, 584
TaqI TCGA 3 cut(s) 122, 229, 458
TasI AATT 1 cut(s) 552
TatI WGTACW 1 cut(s) 570
TauI GCSGC 1 cut(s) 424
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 1 cut(s) 602
Tru9I TTAA 1 cut(s) 602
TseFI GTSAC 3 cut(s) 289, 538, 586
TseI GCWGC 2 cut(s) 42, 153
Tsp45I GTSAC 3 cut(s) 289, 538, 586
TspDTI ATGAA 1 cut(s) 430
TspGWI ACGGA 1 cut(s) 574
VneI GTGCAC 1 cut(s) 524
VpaK11BI GGWCC 1 cut(s) 534
XcmI CCANNNNNNNNNTGG 1 cut(s) 20
XhoI CTCGAG 1 cut(s) 228
XspI CTAG 1 cut(s) 359
ZrmI AGTACT 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.