Rh5BG491400

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0005419
Physical Location & Seq
Reverse (-)
78245013 .. 78253734
8722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG491400.1

Sequence Viewer

Length: 591 bp
ATGCCCCTTTGGGTGGCACAAATTGACAAAGATTCAGTTAGCTTCCACATTCAAAGGCCATCATTTCCAGAACTCAAACCTCAACAACTCAGAGCTCCAAAACTGGCTAACCCTCGAGAATGTGGCCTGGAGGGAGAAACGAAAGGAGACTTGGAGTCTCGCAACAAGCGAGCCGTGACGGCTCTGTACGACGCCTTCAACTCCAAAGACGTTGATGTTGTTCACCTCCTCCTCGCGCCCTACCTAGAGTGGTGGTTCCATGGCCCCCCTACTCATCAGCATTTGAACCGCCTCCTCACCGGTGCGCCGCCGTACGACTCGTCGTTCATATTCCTTCCTCTGTCGATTGTTGCATTCGGATCAATGGTGGTGGCTGAGGGATACGAGGAAGGTCATTCGGTGTCGTGGGTGCACGCGTGGACCGTCACAGATGGGATAATTACCCAAGTGAGGGAGTACTACAACACGTCCGTCACGGTTACGAGGTTAATCTCACCGGAAACTACATCACGGTCAGGTAGTTGCCAGAGTGTTTGGGAGAGTAAGCTCTCTGATAATAAGTCTGTACCTGGCCTCGTATTGGCCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

196

Amino Acids

21.92

Weight (kDa)

5.95

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WI12 PF07107 97 - 196 2.8e-37 Wound-induced protein WI12
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 236, 416
AciI CCGC 2 cut(s) 289, 308
AclWI GGATC 1 cut(s) 367
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 4 cut(s) 188, 314, 458, 567
AfiI CCNNNNNNNGG 4 cut(s) 13, 450, 451, 580
AflIII ACRYGT 2 cut(s) 414, 465
AgeI ACCGGT 1 cut(s) 299
AgsI TTSAA 3 cut(s) 53, 199, 286
AhdI GACNNNNNGTC 1 cut(s) 154
AjiI CACGTC 1 cut(s) 468
AjnI CCWGG 2 cut(s) 126, 568
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 3 cut(s) 42, 95, 547
AluI AGCT 3 cut(s) 42, 95, 547
Alw21I GWGCWC 2 cut(s) 97, 414
Alw26I GTCTC 2 cut(s) 141, 162
Alw44I GTGCAC 1 cut(s) 410
AlwI GGATC 1 cut(s) 367
Ama87I CYCGRG 1 cut(s) 114
AoxI GGCC 5 cut(s) 56, 124, 262, 571, 582
ApaLI GTGCAC 1 cut(s) 410
AsiGI ACCGGT 1 cut(s) 299
AspLEI GCGC 2 cut(s) 238, 307
AspS9I GGNCC 3 cut(s) 263, 420, 583
AsuHPI GGTGA 3 cut(s) 215, 289, 486
AvaI CYCGRG 1 cut(s) 114
AvaII GGWCC 1 cut(s) 420
BaeGI GKGCMC 1 cut(s) 414
BanII GRGCYC 1 cut(s) 97
BarI GAAGNNNNNNTAC 2 cut(s) 179, 211
Bbv12I GWGCWC 2 cut(s) 97, 414
BbvCI CCTCAGC 1 cut(s) 375
BccI CCATC 2 cut(s) 67, 425
BceAI ACGGC 3 cut(s) 158, 195, 295
BciT130I CCWGG 2 cut(s) 128, 570
BciVI GTATCC 1 cut(s) 374
BcoDI GTCTC 2 cut(s) 141, 162
BfaI CTAG 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 587
BfuI GTATCC 1 cut(s) 374
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
BmcAI AGTACT 1 cut(s) 458
Bme1390I CCNGG 2 cut(s) 128, 570
Bme18I GGWCC 1 cut(s) 420
BmeRI GACNNNNNGTC 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 114
BmgBI CACGTC 1 cut(s) 468
BmgT120I GGNCC 3 cut(s) 263, 420, 583
BmiI GGNNCC 2 cut(s) 257, 265
BmrFI CCNGG 2 cut(s) 128, 570
BpmI CTGGAG 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 259
BsaWI WCCGGW 2 cut(s) 299, 496
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 450, 451, 580
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 1 cut(s) 108
BseBI CCWGG 2 cut(s) 128, 570
BseDI CCNNGG 1 cut(s) 259
BseLI CCNNNNNNNGG 4 cut(s) 13, 450, 451, 580
BseMII CTCAG 2 cut(s) 103, 366
BseNI ACTGG 1 cut(s) 108
BseRI GAGGAG 3 cut(s) 218, 221, 284
BseSI GKGCMC 1 cut(s) 414
Bsh1236I CGCG 2 cut(s) 236, 416
BshFI GGCC 5 cut(s) 58, 126, 264, 573, 584
BshTI ACCGGT 1 cut(s) 299
BsiHKAI GWGCWC 2 cut(s) 97, 414
BsiHKCI CYCGRG 1 cut(s) 114
BsiSI CCGG 2 cut(s) 300, 497
BsiWI CGTACG 1 cut(s) 312
BslI CCNNNNNNNGG 4 cut(s) 13, 450, 451, 580
BsmAI GTCTC 2 cut(s) 141, 162
BsmI GAATGC 1 cut(s) 353
BsnI GGCC 5 cut(s) 58, 126, 264, 573, 584
BsoBI CYCGRG 1 cut(s) 114
Bsp1286I GDGCHC 2 cut(s) 97, 414
Bsp143I GATC 1 cut(s) 359
Bsp19I CCATGG 1 cut(s) 259
BspACI CCGC 2 cut(s) 289, 308
BspANI GGCC 5 cut(s) 58, 126, 264, 573, 584
BspCNI CTCAG 2 cut(s) 102, 367
BspFNI CGCG 2 cut(s) 236, 416
BspLI GGNNCC 2 cut(s) 257, 265
BspPI GGATC 1 cut(s) 367
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 1 cut(s) 359
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 2 cut(s) 128, 570
Bst4CI ACNGT 3 cut(s) 424, 478, 513
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 171, 414
BstDEI CTNAG 2 cut(s) 89, 375
BstDSI CCRYGG 1 cut(s) 259
BstFNI CGCG 2 cut(s) 236, 416
BstHHI GCGC 2 cut(s) 238, 307
BstKTI GATC 1 cut(s) 362
BstMAI GTCTC 2 cut(s) 141, 162
BstMBI GATC 1 cut(s) 359
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 2 cut(s) 128, 570
BstSCI CCNGG 2 cut(s) 126, 568
BstSFI CTRYAG 1 cut(s) 587
BstSLI GKGCMC 1 cut(s) 414
BstUI CGCG 2 cut(s) 236, 416
BsuI GTATCC 1 cut(s) 374
BsuRI GGCC 5 cut(s) 58, 126, 264, 573, 584
BtgI CCRYGG 1 cut(s) 259
BtrI CACGTC 1 cut(s) 468
Cac8I GCNNGC 2 cut(s) 171, 414
CfoI GCGC 2 cut(s) 238, 307
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 3 cut(s) 263, 420, 583
CseI GACGC 1 cut(s) 200
Csp6I GTAC 4 cut(s) 187, 313, 457, 566
CspAI ACCGGT 1 cut(s) 299
CspCI CAANNNNNGTGG 2 cut(s) 351, 386
CviAII CATG 1 cut(s) 260
CviQI GTAC 4 cut(s) 187, 313, 457, 566
DdeI CTNAG 2 cut(s) 89, 375
DpnI GATC 1 cut(s) 361
DpnII GATC 1 cut(s) 359
DriI GACNNNNNGTC 1 cut(s) 154
Eam1105I GACNNNNNGTC 1 cut(s) 154
Ecl136II GAGCTC 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 420
Eco53kI GAGCTC 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 114
EcoICRI GAGCTC 1 cut(s) 95
EcoRII CCWGG 2 cut(s) 126, 568
EcoT14I CCWWGG 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 1 cut(s) 263
FaiI YATR 3 cut(s) 261, 329, 589
FatI CATG 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 308
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 308
FspBI CTAG 1 cut(s) 245
GlaI GCGC 2 cut(s) 237, 306
GluI GCNGC 1 cut(s) 308
GsuI CTGGAG 1 cut(s) 149
HaeIII GGCC 5 cut(s) 58, 126, 264, 573, 584
HapII CCGG 2 cut(s) 300, 497
HgaI GACGC 1 cut(s) 200
HhaI GCGC 2 cut(s) 238, 307
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 1 cut(s) 263
Hin6I GCGC 2 cut(s) 236, 305
HinP1I GCGC 2 cut(s) 236, 305
HinfI GANTC 3 cut(s) 32, 155, 317
HpaII CCGG 2 cut(s) 300, 497
HphI GGTGA 3 cut(s) 215, 289, 486
Hpy166II GTNNAC 3 cut(s) 223, 412, 420
Hpy188I TCNGA 3 cut(s) 92, 359, 553
Hpy188III TCNNGA 2 cut(s) 68, 116
Hpy8I GTNNAC 3 cut(s) 223, 412, 420
Hpy99I CGWCG 2 cut(s) 194, 325
HpyAV CCTTC 3 cut(s) 205, 344, 383
HpyCH4III ACNGT 3 cut(s) 424, 478, 513
HpyCH4IV ACGT 2 cut(s) 210, 467
HpyCH4V TGCA 2 cut(s) 353, 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 2 cut(s) 89, 375
HpySE526I ACGT 2 cut(s) 210, 467
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 1 cut(s) 263
HspAI GCGC 2 cut(s) 236, 305
Kzo9I GATC 1 cut(s) 359
LmnI GCTCC 1 cut(s) 100
MaeI CTAG 1 cut(s) 245
MaeII ACGT 2 cut(s) 210, 467
MaeIII GTNAC 4 cut(s) 175, 424, 472, 478
MalI GATC 1 cut(s) 361
MboI GATC 1 cut(s) 359
MhlI GDGCHC 2 cut(s) 97, 414
MluCI AATT 2 cut(s) 21, 438
MluI ACGCGT 1 cut(s) 414
MlyI GAGTC 2 cut(s) 164, 311
MseI TTAA 1 cut(s) 488
MspI CCGG 2 cut(s) 300, 497
MspR9I CCNGG 2 cut(s) 128, 570
Mva1269I GAATGC 1 cut(s) 353
MvaI CCWGG 2 cut(s) 128, 570
MvnI CGCG 2 cut(s) 236, 416
MwoI GCNNNNNNNGC 1 cut(s) 179
NcoI CCATGG 1 cut(s) 259
NdeII GATC 1 cut(s) 359
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 2 cut(s) 257, 265
NmuCI GTSAC 3 cut(s) 175, 424, 472
PaeR7I CTCGAG 1 cut(s) 114
PcsI WCGNNNNNNNCGW 2 cut(s) 166, 420
PctI GAATGC 1 cut(s) 353
PfeI GAWTC 1 cut(s) 32
Pfl23II CGTACG 1 cut(s) 312
PinAI ACCGGT 1 cut(s) 299
PkrI GCNGC 1 cut(s) 309
PleI GAGTC 2 cut(s) 163, 311
PpsI GAGTC 2 cut(s) 163, 311
Psp124BI GAGCTC 1 cut(s) 97
Psp6I CCWGG 2 cut(s) 126, 568
PspGI CCWGG 2 cut(s) 126, 568
PspLI CGTACG 1 cut(s) 312
PspN4I GGNNCC 2 cut(s) 257, 265
PspPI GGNCC 3 cut(s) 263, 420, 583
RsaI GTAC 4 cut(s) 188, 314, 458, 567
RsaNI GTAC 4 cut(s) 187, 313, 457, 566
SacI GAGCTC 1 cut(s) 97
SaqAI TTAA 1 cut(s) 488
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 1 cut(s) 359
Sau96I GGNCC 3 cut(s) 263, 420, 583
ScaI AGTACT 1 cut(s) 458
SchI GAGTC 2 cut(s) 164, 311
ScrFI CCNGG 2 cut(s) 128, 570
SduI GDGCHC 2 cut(s) 97, 414
SfcI CTRYAG 1 cut(s) 587
Sfr274I CTCGAG 1 cut(s) 114
SgrAI CRCCGGYG 1 cut(s) 299
SinI GGWCC 1 cut(s) 420
SlaI CTCGAG 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 2 cut(s) 21, 438
SsiI CCGC 2 cut(s) 289, 308
SspMI CTAG 1 cut(s) 245
SstI GAGCTC 1 cut(s) 97
StyD4I CCNGG 2 cut(s) 126, 568
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 3 cut(s) 424, 478, 513
TaiI ACGT 2 cut(s) 213, 470
TaqI TCGA 2 cut(s) 115, 344
TasI AATT 2 cut(s) 21, 438
TatI WGTACW 1 cut(s) 456
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 488
Tru9I TTAA 1 cut(s) 488
TseFI GTSAC 3 cut(s) 175, 424, 472
Tsp45I GTSAC 3 cut(s) 175, 424, 472
TspDTI ATGAA 1 cut(s) 316
TspGWI ACGGA 1 cut(s) 460
VneI GTGCAC 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 420
XhoI CTCGAG 1 cut(s) 114
XspI CTAG 1 cut(s) 245
ZrmI AGTACT 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.