RLG00000036261

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005419
Physical Location & Seq
Reverse (-)
78187118 .. 78188434
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036261

Sequence Viewer

Length: 564 bp
ATGCAGAATTTAAACTTCCACATTCAAAGCCACCATTTCCAGAACTCAAAGCCTCAACAACTCAGAGCTCCAAAACTGGCTAACCCTCGAGAATGTGGCCTGGAGGGAGAAAAGAAAGGAGACTTGGAGTCTCGCAACAAGCGAGCCGTGACGGCTCTGTACGACGCTTTCAACTCCAAAGACGTTGACGTTGTTCACCTCCTCCTCGCGCCCTACCTAGAGTGGTGGTTCCATGGCCCCCCTACTCATCAGCATTTGAACCGCCTCCTCACCGGTGCGCCGCCGTACGACTCGTCGTTCATATTCCTCCCTCTGTCGATTGTTGCATTCGGATCAATGGTGGTGGCTGAGGGATACGAGGAGGGTCATTCGGTCTCGTGGGTGCACGCGTGGACCGTCACAGATGGGATAATTACCCAAGTGAGGGAGTACTACAACACGTCCGTCACGGTTACCAGGTTAATCTCACCGGAAACTACATCACGGTCAGGTAGTTGCCAGAGTGTTTGGGAGAGTAAGCTCTCTGATAATAAGTCTGTACCTGGCCTCGTATTGGCCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

188

Amino Acids

20.99

Weight (kDa)

6.49

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WI12 PF07107 88 - 187 2.5e-37 Wound-induced protein WI12
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 209, 389
AciI CCGC 2 cut(s) 262, 281
AclWI GGATC 1 cut(s) 340
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 4 cut(s) 161, 287, 431, 540
AfiI CCNNNNNNNGG 3 cut(s) 423, 424, 553
AflIII ACRYGT 2 cut(s) 387, 438
AgeI ACCGGT 1 cut(s) 272
AgsI TTSAA 3 cut(s) 26, 172, 259
AhdI GACNNNNNGTC 1 cut(s) 127
AjiI CACGTC 1 cut(s) 441
AjnI CCWGG 3 cut(s) 99, 455, 541
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AluBI AGCT 2 cut(s) 68, 520
AluI AGCT 2 cut(s) 68, 520
Alw21I GWGCWC 2 cut(s) 70, 387
Alw26I GTCTC 3 cut(s) 114, 135, 379
Alw44I GTGCAC 1 cut(s) 383
AlwI GGATC 1 cut(s) 340
Ama87I CYCGRG 1 cut(s) 87
AoxI GGCC 4 cut(s) 97, 235, 544, 555
ApaLI GTGCAC 1 cut(s) 383
ApoI RAATTY 1 cut(s) 7
AsiGI ACCGGT 1 cut(s) 272
AspLEI GCGC 2 cut(s) 211, 280
AspS9I GGNCC 3 cut(s) 236, 393, 556
AsuHPI GGTGA 3 cut(s) 188, 262, 459
AvaI CYCGRG 1 cut(s) 87
AvaII GGWCC 1 cut(s) 393
BaeGI GKGCMC 1 cut(s) 387
BanII GRGCYC 1 cut(s) 70
BauI CACGAG 1 cut(s) 376
Bbv12I GWGCWC 2 cut(s) 70, 387
BbvCI CCTCAGC 1 cut(s) 348
BccI CCATC 1 cut(s) 398
BceAI ACGGC 3 cut(s) 131, 168, 268
BciT130I CCWGG 3 cut(s) 101, 457, 543
BciVI GTATCC 1 cut(s) 347
BcoDI GTCTC 3 cut(s) 114, 135, 379
BfaI CTAG 1 cut(s) 218
BfmI CTRYAG 1 cut(s) 560
BfuI GTATCC 1 cut(s) 347
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
BmcAI AGTACT 1 cut(s) 431
Bme1390I CCNGG 3 cut(s) 101, 457, 543
Bme18I GGWCC 1 cut(s) 393
BmeRI GACNNNNNGTC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 87
BmgBI CACGTC 1 cut(s) 441
BmgT120I GGNCC 3 cut(s) 236, 393, 556
BmiI GGNNCC 2 cut(s) 230, 238
BmrFI CCNGG 3 cut(s) 101, 457, 543
BpmI CTGGAG 1 cut(s) 122
Bpu10I CCTNAGC 1 cut(s) 348
BsaI GGTCTC 1 cut(s) 379
BsaJI CCNNGG 1 cut(s) 232
BsaWI WCCGGW 2 cut(s) 272, 469
Bsc4I CCNNNNNNNGG 3 cut(s) 423, 424, 553
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 81
BseBI CCWGG 3 cut(s) 101, 457, 543
BseDI CCNNGG 1 cut(s) 232
BseLI CCNNNNNNNGG 3 cut(s) 423, 424, 553
BseMII CTCAG 2 cut(s) 76, 339
BseNI ACTGG 1 cut(s) 81
BseRI GAGGAG 4 cut(s) 191, 194, 257, 374
BseSI GKGCMC 1 cut(s) 387
Bsh1236I CGCG 2 cut(s) 209, 389
BshFI GGCC 4 cut(s) 99, 237, 546, 557
BshTI ACCGGT 1 cut(s) 272
BsiHKAI GWGCWC 2 cut(s) 70, 387
BsiHKCI CYCGRG 1 cut(s) 87
BsiSI CCGG 2 cut(s) 273, 470
BsiWI CGTACG 1 cut(s) 285
BslI CCNNNNNNNGG 3 cut(s) 423, 424, 553
BsmAI GTCTC 3 cut(s) 114, 135, 379
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 4 cut(s) 99, 237, 546, 557
Bso31I GGTCTC 1 cut(s) 379
BsoBI CYCGRG 1 cut(s) 87
Bsp1286I GDGCHC 2 cut(s) 70, 387
Bsp143I GATC 1 cut(s) 332
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 2 cut(s) 262, 281
BspANI GGCC 4 cut(s) 99, 237, 546, 557
BspCNI CTCAG 2 cut(s) 75, 340
BspFNI CGCG 2 cut(s) 209, 389
BspLI GGNNCC 2 cut(s) 230, 238
BspPI GGATC 1 cut(s) 340
BspTNI GGTCTC 1 cut(s) 379
BsrFI RCCGGY 1 cut(s) 272
BsrI ACTGG 1 cut(s) 81
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 1 cut(s) 332
BssSI CACGAG 1 cut(s) 376
BssT1I CCWWGG 1 cut(s) 232
Bst2BI CACGAG 1 cut(s) 376
Bst2UI CCWGG 3 cut(s) 101, 457, 543
Bst4CI ACNGT 3 cut(s) 397, 451, 486
BstC8I GCNNGC 2 cut(s) 144, 387
BstDEI CTNAG 2 cut(s) 62, 348
BstDSI CCRYGG 1 cut(s) 232
BstEII GGTNACC 1 cut(s) 451
BstFNI CGCG 2 cut(s) 209, 389
BstHHI GCGC 2 cut(s) 211, 280
BstKTI GATC 1 cut(s) 335
BstMAI GTCTC 3 cut(s) 114, 135, 379
BstMBI GATC 1 cut(s) 332
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 3 cut(s) 101, 457, 543
BstPI GGTNACC 1 cut(s) 451
BstSCI CCNGG 3 cut(s) 99, 455, 541
BstSFI CTRYAG 1 cut(s) 560
BstSLI GKGCMC 1 cut(s) 387
BstUI CGCG 2 cut(s) 209, 389
BsuI GTATCC 1 cut(s) 347
BsuRI GGCC 4 cut(s) 99, 237, 546, 557
BtgI CCRYGG 1 cut(s) 232
BtrI CACGTC 1 cut(s) 441
Cac8I GCNNGC 2 cut(s) 144, 387
CfoI GCGC 2 cut(s) 211, 280
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 3 cut(s) 236, 393, 556
CseI GACGC 1 cut(s) 173
CsiI ACCWGGT 1 cut(s) 455
Csp6I GTAC 4 cut(s) 160, 286, 430, 539
CspAI ACCGGT 1 cut(s) 272
CspCI CAANNNNNGTGG 2 cut(s) 324, 359
CviAII CATG 1 cut(s) 233
CviQI GTAC 4 cut(s) 160, 286, 430, 539
DdeI CTNAG 2 cut(s) 62, 348
DpnI GATC 1 cut(s) 334
DpnII GATC 1 cut(s) 332
DraI TTTAAA 1 cut(s) 12
DriI GACNNNNNGTC 1 cut(s) 127
Eam1105I GACNNNNNGTC 1 cut(s) 127
Ecl136II GAGCTC 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 393
Eco53kI GAGCTC 1 cut(s) 68
Eco88I CYCGRG 1 cut(s) 87
Eco91I GGTNACC 1 cut(s) 451
EcoICRI GAGCTC 1 cut(s) 68
EcoO65I GGTNACC 1 cut(s) 451
EcoRII CCWGG 3 cut(s) 99, 455, 541
EcoT14I CCWWGG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 1 cut(s) 236
FaiI YATR 3 cut(s) 234, 302, 562
FatI CATG 1 cut(s) 232
Fnu4HI GCNGC 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 281
FspBI CTAG 1 cut(s) 218
GlaI GCGC 2 cut(s) 210, 279
GluI GCNGC 1 cut(s) 281
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 4 cut(s) 99, 237, 546, 557
HapII CCGG 2 cut(s) 273, 470
HgaI GACGC 1 cut(s) 173
HhaI GCGC 2 cut(s) 211, 280
Hin1II CATG 1 cut(s) 236
Hin6I GCGC 2 cut(s) 209, 278
HinP1I GCGC 2 cut(s) 209, 278
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 2 cut(s) 128, 290
HpaII CCGG 2 cut(s) 273, 470
HphI GGTGA 3 cut(s) 188, 262, 459
Hpy166II GTNNAC 4 cut(s) 187, 196, 385, 393
Hpy188I TCNGA 3 cut(s) 65, 332, 526
Hpy188III TCNNGA 2 cut(s) 40, 89
Hpy8I GTNNAC 4 cut(s) 187, 196, 385, 393
Hpy99I CGWCG 2 cut(s) 167, 298
HpyCH4III ACNGT 3 cut(s) 397, 451, 486
HpyCH4IV ACGT 3 cut(s) 183, 189, 440
HpyCH4V TGCA 3 cut(s) 4, 326, 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 2 cut(s) 62, 348
HpySE526I ACGT 3 cut(s) 183, 189, 440
Hsp92II CATG 1 cut(s) 236
HspAI GCGC 2 cut(s) 209, 278
Kzo9I GATC 1 cut(s) 332
LmnI GCTCC 1 cut(s) 73
MabI ACCWGGT 1 cut(s) 455
MaeI CTAG 1 cut(s) 218
MaeII ACGT 3 cut(s) 183, 189, 440
MaeIII GTNAC 4 cut(s) 148, 397, 445, 451
MalI GATC 1 cut(s) 334
MboI GATC 1 cut(s) 332
MhlI GDGCHC 2 cut(s) 70, 387
MluCI AATT 2 cut(s) 7, 411
MluI ACGCGT 1 cut(s) 387
MlyI GAGTC 2 cut(s) 137, 284
MseI TTAA 2 cut(s) 11, 461
MspI CCGG 2 cut(s) 273, 470
MspR9I CCNGG 3 cut(s) 101, 457, 543
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 3 cut(s) 101, 457, 543
MvnI CGCG 2 cut(s) 209, 389
MwoI GCNNNNNNNGC 1 cut(s) 152
NcoI CCATGG 1 cut(s) 232
NdeII GATC 1 cut(s) 332
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 2 cut(s) 230, 238
NmuCI GTSAC 3 cut(s) 148, 397, 445
PaeR7I CTCGAG 1 cut(s) 87
PcsI WCGNNNNNNNCGW 2 cut(s) 139, 393
PctI GAATGC 1 cut(s) 326
Pfl23II CGTACG 1 cut(s) 285
PinAI ACCGGT 1 cut(s) 272
PkrI GCNGC 1 cut(s) 282
PleI GAGTC 2 cut(s) 136, 284
PpsI GAGTC 2 cut(s) 136, 284
Psp124BI GAGCTC 1 cut(s) 70
Psp6I CCWGG 3 cut(s) 99, 455, 541
PspEI GGTNACC 1 cut(s) 451
PspGI CCWGG 3 cut(s) 99, 455, 541
PspLI CGTACG 1 cut(s) 285
PspN4I GGNNCC 2 cut(s) 230, 238
PspPI GGNCC 3 cut(s) 236, 393, 556
RsaI GTAC 4 cut(s) 161, 287, 431, 540
RsaNI GTAC 4 cut(s) 160, 286, 430, 539
SacI GAGCTC 1 cut(s) 70
SaqAI TTAA 2 cut(s) 11, 461
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 1 cut(s) 332
Sau96I GGNCC 3 cut(s) 236, 393, 556
ScaI AGTACT 1 cut(s) 431
SchI GAGTC 2 cut(s) 137, 284
ScrFI CCNGG 3 cut(s) 101, 457, 543
SduI GDGCHC 2 cut(s) 70, 387
SexAI ACCWGGT 1 cut(s) 455
SfcI CTRYAG 1 cut(s) 560
Sfr274I CTCGAG 1 cut(s) 87
SgrAI CRCCGGYG 1 cut(s) 272
SinI GGWCC 1 cut(s) 393
SlaI CTCGAG 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
Sse9I AATT 2 cut(s) 7, 411
SsiI CCGC 2 cut(s) 262, 281
SspMI CTAG 1 cut(s) 218
SstI GAGCTC 1 cut(s) 70
StyD4I CCNGG 3 cut(s) 99, 455, 541
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 3 cut(s) 397, 451, 486
TaiI ACGT 3 cut(s) 186, 192, 443
TaqI TCGA 2 cut(s) 88, 317
TaqII GACCGA 1 cut(s) 361
TasI AATT 2 cut(s) 7, 411
TatI WGTACW 1 cut(s) 429
TauI GCSGC 1 cut(s) 283
Tru1I TTAA 2 cut(s) 11, 461
Tru9I TTAA 2 cut(s) 11, 461
TseFI GTSAC 3 cut(s) 148, 397, 445
Tsp45I GTSAC 3 cut(s) 148, 397, 445
TspDTI ATGAA 1 cut(s) 289
TspGWI ACGGA 1 cut(s) 433
VneI GTGCAC 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 393
XapI RAATTY 1 cut(s) 7
XhoI CTCGAG 1 cut(s) 87
XspI CTAG 1 cut(s) 218
ZrmI AGTACT 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.