Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005419

Physical Location & Seq

Genomic Coordinates Reverse (-)

30404007 .. 30404387

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1228900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCGCATCCTCACCGGCTCCCAAAAAGAACCCTTTCAGTTCGTCCCCCAGTCCTTCGCCTCCTTCGGCCCCACCGTCCTCGTCGAGGGCTGCGACTGCGACTGCTCCATTTCCTGGGTCCACGCCTGGACTGTCGCCAATGGGGTAATCACCGGGGTCCGCGAGTACTTCAACACTTCCCTCACCGTCACGCGCCTCGGAAACAACACCCAGAACAACTCTCCCGCCTCCTCCTCTAAATCCTCGCCGTCCGGGTTTTCCTCCAATTCGTCGTCGTCGTCGACAGCCGAGATTACGTCGTTCCATTGCCCGTCCGTTTGGGAGAGCAGCGTCTCCAATCGGGTCGGAAAGTCCGTGCCGGGTCTTGTCCTCGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002238 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009624 GO:0010033 GO:0010035 GO:0010150 GO:0010193 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0090693 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WI12

Protein Analysis

127

Amino Acids

13.33

Weight (kDa)

6.7

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WI12	PF07107	1 - 126	3.1e-39	Wound-induced protein WI12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10985
fragaria_vesca	FvH4_3g39920
malus_domestica	MD01G1160900.v1.1 MD03G1057800.v1.1 MD04G1079700.v1.1 MD07G1228900.v1.1 MD11G1060200.v1.1
prunus_persica	Prupe.2G258900_v2.0.a1 Prupe.6G046200_v2.0.a1
pyrus_communis	pycom07g20710
rosa_chinensis	RchiOBHm_Chr5g0071891
rosa_laevigata	RLG00000026965 RLG00000036261
rosa_multiflora	Rmu_sc0000809.1_g000024 Rmu_sc0002149.1_g000013 Rmu_sc0029638.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009270 Rroxscaffold_4G00285700
rosa_rugosa	Rorug01G0363800 Rorug05G0415500
rosa_samantha	Rh1AG373900 Rh1BG337300 Rh1CG350600 Rh1DG368300 Rh5BG491400 Rh5CG515300 Rh5DG502900
rosa_wichuraiana	Rw1G032890 Rw5G043820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AccB7I	CCANNNNNTGG	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	281
AccII	CGCG	2 cut(s)	162, 193
AciI	CCGC	2 cut(s)	160, 225
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	85, 114
AgsI	TTSAA	1 cut(s)	172
AjnI	CCWGG	2 cut(s)	113, 125
Alw26I	GTCTC	1 cut(s)	337
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	2 cut(s)	90, 327
Asp700I	GAANNNNTTC	1 cut(s)	33
AspLEI	GCGC	2 cut(s)	6, 195
AspS9I	GGNCC	3 cut(s)	68, 118, 157
AsuC2I	CCSGG	3 cut(s)	154, 253, 360
AsuHPI	GGTGA	3 cut(s)	4, 142, 175
AvaII	GGWCC	2 cut(s)	118, 157
BbvI	GCAGC	2 cut(s)	77, 339
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	2 cut(s)	115, 127
BcnI	CCSGG	3 cut(s)	154, 253, 360
BcoDI	GTCTC	1 cut(s)	337
BisI	GCNGC	2 cut(s)	91, 328
BlsI	GCNGC	2 cut(s)	92, 329
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	5 cut(s)	115, 127, 154, 253, 360
Bme18I	GGWCC	2 cut(s)	118, 157
BmgT120I	GGNCC	3 cut(s)	68, 118, 157
BmiI	GGNNCC	4 cut(s)	19, 70, 119, 158
BmrFI	CCNGG	5 cut(s)	115, 127, 154, 253, 360
BmrI	ACTGGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	15
BmuI	ACTGGG	1 cut(s)	43
BpuMI	CCSGG	3 cut(s)	154, 253, 360
BsaJI	CCNNGG	3 cut(s)	114, 153, 196
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 114
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	304
BseBI	CCWGG	2 cut(s)	115, 127
BseDI	CCNNGG	3 cut(s)	114, 153, 196
BseGI	GGATG	1 cut(s)	6
BseLI	CCNNNNNNNGG	2 cut(s)	85, 114
BseMI	GCAATG	1 cut(s)	304
BseNI	ACTGG	1 cut(s)	49
BseRI	GAGGAG	2 cut(s)	220, 223
BseXI	GCAGC	2 cut(s)	77, 339
Bsh1236I	CGCG	2 cut(s)	162, 193
BshFI	GGCC	1 cut(s)	69
BsiSI	CCGG	4 cut(s)	15, 153, 252, 359
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	2 cut(s)	85, 114
BsmAI	GTCTC	1 cut(s)	337
BsmBI	CGTCTC	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	69
BspACI	CCGC	2 cut(s)	160, 225
BspANI	GGCC	1 cut(s)	69
BspFNI	CGCG	2 cut(s)	162, 193
BspLI	GGNNCC	4 cut(s)	19, 70, 119, 158
BsrDI	GCAATG	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	3 cut(s)	114, 153, 196
Bst2UI	CCWGG	2 cut(s)	115, 127
Bst4CI	ACNGT	3 cut(s)	76, 133, 187
BstENI	CCTNNNNNAGG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	6
BstFNI	CGCG	2 cut(s)	162, 193
BstHHI	GCGC	2 cut(s)	6, 195
BstMAI	GTCTC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNI	CCWGG	2 cut(s)	115, 127
BstSCI	CCNGG	5 cut(s)	113, 125, 152, 251, 358
BstUI	CGCG	2 cut(s)	162, 193
BstV1I	GCAGC	2 cut(s)	77, 339
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	6
CfoI	GCGC	2 cut(s)	6, 195
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	3 cut(s)	68, 118, 157
CseI	GACGC	1 cut(s)	319
Csp6I	GTAC	1 cut(s)	166
CviJI	RGCY	4 cut(s)	18, 69, 90, 287
CviKI_1	RGCY	4 cut(s)	18, 69, 90, 287
CviQI	GTAC	1 cut(s)	166
Eco47I	GGWCC	2 cut(s)	118, 157
EcoNI	CCTNNNNNAGG	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	113, 125
Esp3I	CGTCTC	1 cut(s)	337
FaqI	GGGAC	1 cut(s)	29
FauI	CCCGC	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	2 cut(s)	91, 328
Fsp4HI	GCNGC	2 cut(s)	91, 328
FspAI	RTGCGCAY	1 cut(s)	5
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	2 cut(s)	5, 194
GluI	GCNGC	2 cut(s)	91, 328
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	4 cut(s)	15, 153, 252, 359
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	2 cut(s)	6, 195
Hin6I	GCGC	2 cut(s)	4, 193
HinP1I	GCGC	2 cut(s)	4, 193
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HpaII	CCGG	4 cut(s)	15, 153, 252, 359
HphI	GGTGA	3 cut(s)	4, 142, 175
Hpy166II	GTNNAC	2 cut(s)	121, 282
Hpy188I	TCNGA	2 cut(s)	200, 347
Hpy8I	GTNNAC	2 cut(s)	121, 282
Hpy99I	CGWCG	6 cut(s)	86, 274, 277, 280, 283, 301
HpyAV	CCTTC	2 cut(s)	64, 73
HpyCH4III	ACNGT	3 cut(s)	76, 133, 187
HpyCH4IV	ACGT	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpySE526I	ACGT	1 cut(s)	296
HspAI	GCGC	2 cut(s)	4, 193
LmnI	GCTCC	2 cut(s)	23, 110
Lsp1109I	GCAGC	2 cut(s)	77, 339
LweI	GCATC	1 cut(s)	15
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	187
MluCI	AATT	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	33
MspI	CCGG	4 cut(s)	15, 153, 252, 359
MspR9I	CCNGG	5 cut(s)	115, 127, 154, 253, 360
MvaI	CCWGG	2 cut(s)	115, 127
MvnI	CGCG	2 cut(s)	162, 193
MwoI	GCNNNNNNNGC	1 cut(s)	96
NciI	CCSGG	3 cut(s)	154, 253, 360
NlaIV	GGNNCC	4 cut(s)	19, 70, 119, 158
NmeAIII	GCCGAG	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	187
NsbI	TGCGCA	1 cut(s)	5
PcsI	WCGNNNNNNNCGW	5 cut(s)	72, 90, 275, 278, 351
PdmI	GAANNNNTTC	1 cut(s)	33
PflMI	CCANNNNNTGG	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	92, 329
Psp6I	CCWGG	2 cut(s)	113, 125
PspGI	CCWGG	2 cut(s)	113, 125
PspN4I	GGNNCC	4 cut(s)	19, 70, 119, 158
PspPI	GGNCC	3 cut(s)	68, 118, 157
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SalI	GTCGAC	1 cut(s)	280
SatI	GCNGC	2 cut(s)	91, 328
Sau96I	GGNCC	3 cut(s)	68, 118, 157
ScaI	AGTACT	1 cut(s)	167
ScrFI	CCNGG	5 cut(s)	115, 127, 154, 253, 360
SetI	ASST	1 cut(s)	299
SfaNI	GCATC	1 cut(s)	15
SinI	GGWCC	2 cut(s)	118, 157
Sse9I	AATT	1 cut(s)	265
SsiI	CCGC	2 cut(s)	160, 225
StyD4I	CCNGG	5 cut(s)	113, 125, 152, 251, 358
TaaI	ACNGT	3 cut(s)	76, 133, 187
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	2 cut(s)	84, 281
TasI	AATT	1 cut(s)	265
TatI	WGTACW	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	2 cut(s)	90, 327
Tsp45I	GTSAC	1 cut(s)	187
TspGWI	ACGGA	2 cut(s)	304, 343
Van91I	CCANNNNNTGG	1 cut(s)	114
VpaK11BI	GGWCC	2 cut(s)	118, 157
XagI	CCTNNNNNAGG	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	33
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.