FvH4_3g39920

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005419
Physical Location & Seq
Reverse (-)
33806990 .. 33808063
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39920.t1

Sequence Viewer

Length: 582 bp
ATGTCCCAAAACGAGAACCATATCCAGCTTCCACATTCAAAGCCACCATTCCCAGAACACAAAGCTAGCCTTCAACAACTCAGAGTTCCAGAACTGGCAAACCCTAAAGAATGTGGCCTTGGGGGAGAAGCAAATGGAGACGTAGAGTCTCGCAACAAGAGAGCCGTCAAGTCTCTCTACGACGCCTTCAACTCCAAAGACGTTGACGTAGTTCACCTCCTCCTCGCGCCCTACCTAGAGTGGTGGTTCCACGGCCCCCCAACTCACCAGCATTTGAACCGCCTCCTCACCGGCGCACCGCCCTACGACTCGTCGTTTAAATTCGCTCCGCTGTCGATTGTTGCGTTCGGATCAATGGTGGTGGCTGAGGGATACGACGAGGGTCGTTCAGTGTCGTGGGTGCATGCGTGGACTGTCACTGATGGGATAATTACCCAGGTGAGGGAGTACTACAACACGTCGGTCACTGTTACCAGGTTATATTCACCGGAAATCACATCGCCGTCGGGTAGTTGCCAGAATGTTTGGGAGAGTAAGCTCTCTGATAATAAGTCTGTACCTGGCCTCGTATTGGCTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

194

Amino Acids

21.44

Weight (kDa)

6.04

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WI12 PF07107 94 - 193 2.4e-38 Wound-induced protein WI12
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 227
AciI CCGC 3 cut(s) 280, 299, 329
AclWI GGATC 1 cut(s) 358
AcsI RAATTY 1 cut(s) 320
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 2 cut(s) 449, 558
AfiI CCNNNNNNNGG 3 cut(s) 441, 442, 571
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 4 cut(s) 39, 74, 190, 277
AhdI GACNNNNNGTC 1 cut(s) 145
AjiI CACGTC 1 cut(s) 459
AjnI CCWGG 3 cut(s) 435, 473, 559
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
AluBI AGCT 3 cut(s) 28, 65, 538
AluI AGCT 3 cut(s) 28, 65, 538
Alw26I GTCTC 3 cut(s) 132, 153, 177
AlwI GGATC 1 cut(s) 358
AoxI GGCC 3 cut(s) 115, 253, 562
ApoI RAATTY 1 cut(s) 320
AspLEI GCGC 2 cut(s) 229, 296
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 5 cut(s) 206, 257, 280, 451, 477
AsuNHI GCTAGC 1 cut(s) 65
BbvCI CCTCAGC 1 cut(s) 366
BccI CCATC 1 cut(s) 416
BceAI ACGGC 3 cut(s) 149, 268, 487
BciT130I CCWGG 3 cut(s) 437, 475, 561
BciVI GTATCC 1 cut(s) 365
BcoDI GTCTC 3 cut(s) 132, 153, 177
BfaI CTAG 2 cut(s) 66, 236
BfmI CTRYAG 1 cut(s) 578
BfuI GTATCC 1 cut(s) 365
BmcAI AGTACT 1 cut(s) 449
Bme1390I CCNGG 3 cut(s) 437, 475, 561
BmeRI GACNNNNNGTC 1 cut(s) 145
BmgBI CACGTC 1 cut(s) 459
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 2 cut(s) 248, 256
BmrFI CCNGG 3 cut(s) 437, 475, 561
BmtI GCTAGC 1 cut(s) 69
BoxI GACNNNNGTC 1 cut(s) 381
Bpu10I CCTNAGC 1 cut(s) 366
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 3 cut(s) 118, 250, 435
BsaWI WCCGGW 1 cut(s) 487
Bsc4I CCNNNNNNNGG 3 cut(s) 441, 442, 571
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 99
BseBI CCWGG 3 cut(s) 437, 475, 561
BseDI CCNNGG 3 cut(s) 118, 250, 435
BseLI CCNNNNNNNGG 3 cut(s) 441, 442, 571
BseMII CTCAG 2 cut(s) 94, 357
BseNI ACTGG 1 cut(s) 99
BseRI GAGGAG 3 cut(s) 209, 212, 275
Bsh1236I CGCG 1 cut(s) 227
BshFI GGCC 3 cut(s) 117, 255, 564
BsiSI CCGG 2 cut(s) 291, 488
BslI CCNNNNNNNGG 3 cut(s) 441, 442, 571
BsmAI GTCTC 3 cut(s) 132, 153, 177
BsmBI CGTCTC 1 cut(s) 132
BsnI GGCC 3 cut(s) 117, 255, 564
Bsp143I GATC 1 cut(s) 350
BspACI CCGC 3 cut(s) 280, 299, 329
BspANI GGCC 3 cut(s) 117, 255, 564
BspCNI CTCAG 2 cut(s) 93, 358
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 2 cut(s) 248, 256
BspOI GCTAGC 1 cut(s) 69
BspPI GGATC 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 290
BsrI ACTGG 1 cut(s) 99
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 3 cut(s) 118, 250, 435
BssMI GATC 1 cut(s) 350
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 118
Bst2UI CCWGG 3 cut(s) 437, 475, 561
Bst4CI ACNGT 2 cut(s) 415, 469
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 2 cut(s) 67, 405
BstDEI CTNAG 2 cut(s) 80, 366
BstDSI CCRYGG 1 cut(s) 250
BstFNI CGCG 1 cut(s) 227
BstHHI GCGC 2 cut(s) 229, 296
BstKTI GATC 1 cut(s) 353
BstMAI GTCTC 3 cut(s) 132, 153, 177
BstMBI GATC 1 cut(s) 350
BstNI CCWGG 3 cut(s) 437, 475, 561
BstNSI RCATGY 1 cut(s) 407
BstPAI GACNNNNGTC 1 cut(s) 381
BstSCI CCNGG 3 cut(s) 435, 473, 559
BstSFI CTRYAG 1 cut(s) 578
BstUI CGCG 1 cut(s) 227
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 3 cut(s) 117, 255, 564
BtgI CCRYGG 1 cut(s) 250
BtgZI GCGATG 1 cut(s) 483
BtrI CACGTC 1 cut(s) 459
BtsIMutI CAGTG 3 cut(s) 396, 417, 465
Cac8I GCNNGC 2 cut(s) 67, 405
CfoI GCGC 2 cut(s) 229, 296
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 254
CseI GACGC 1 cut(s) 191
CsiI ACCWGGT 1 cut(s) 473
Csp6I GTAC 2 cut(s) 448, 557
CspCI CAANNNNNGTGG 2 cut(s) 342, 377
CviAII CATG 1 cut(s) 404
CviQI GTAC 2 cut(s) 448, 557
DdeI CTNAG 2 cut(s) 80, 366
DpnI GATC 1 cut(s) 352
DpnII GATC 1 cut(s) 350
DraI TTTAAA 1 cut(s) 319
DriI GACNNNNNGTC 1 cut(s) 145
Eam1105I GACNNNNNGTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 118
EcoRII CCWGG 3 cut(s) 435, 473, 559
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 1 cut(s) 407
FaiI YATR 4 cut(s) 21, 405, 481, 580
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FatI CATG 1 cut(s) 403
FspBI CTAG 2 cut(s) 66, 236
GlaI GCGC 2 cut(s) 228, 295
HaeIII GGCC 3 cut(s) 117, 255, 564
HapII CCGG 2 cut(s) 291, 488
HgaI GACGC 1 cut(s) 191
HhaI GCGC 2 cut(s) 229, 296
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 1 cut(s) 407
Hin6I GCGC 2 cut(s) 227, 294
HinP1I GCGC 2 cut(s) 227, 294
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 2 cut(s) 146, 308
HpaII CCGG 2 cut(s) 291, 488
HphI GGTGA 5 cut(s) 206, 257, 280, 451, 477
Hpy166II GTNNAC 3 cut(s) 205, 214, 411
Hpy188I TCNGA 3 cut(s) 83, 350, 544
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 3 cut(s) 205, 214, 411
Hpy99I CGWCG 5 cut(s) 185, 316, 380, 463, 508
HpyAV CCTTC 2 cut(s) 80, 196
HpyCH4III ACNGT 2 cut(s) 415, 469
HpyCH4IV ACGT 4 cut(s) 141, 201, 207, 458
HpyCH4V TGCA 1 cut(s) 403
HpyF3I CTNAG 2 cut(s) 80, 366
HpySE526I ACGT 4 cut(s) 141, 201, 207, 458
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 1 cut(s) 407
HspAI GCGC 2 cut(s) 227, 294
Kzo9I GATC 1 cut(s) 350
LmnI GCTCC 1 cut(s) 331
MabI ACCWGGT 1 cut(s) 473
MaeI CTAG 2 cut(s) 66, 236
MaeII ACGT 4 cut(s) 141, 201, 207, 458
MaeIII GTNAC 3 cut(s) 415, 463, 469
MalI GATC 1 cut(s) 352
MboI GATC 1 cut(s) 350
MluCI AATT 2 cut(s) 320, 429
MlyI GAGTC 2 cut(s) 155, 302
MnlI CCTC 9 cut(s) 227, 230, 233, 293, 296, 361, 373, 435, 575
MseI TTAA 1 cut(s) 318
MspA1I CMGCKG 1 cut(s) 331
MspI CCGG 2 cut(s) 291, 488
MspR9I CCNGG 3 cut(s) 437, 475, 561
MvaI CCWGG 3 cut(s) 437, 475, 561
MvnI CGCG 1 cut(s) 227
NdeII GATC 1 cut(s) 350
NheI GCTAGC 1 cut(s) 65
NlaIII CATG 1 cut(s) 407
NlaIV GGNNCC 2 cut(s) 248, 256
NmuCI GTSAC 2 cut(s) 415, 463
NspI RCATGY 1 cut(s) 407
PaeI GCATGC 1 cut(s) 407
PcsI WCGNNNNNNNCGW 1 cut(s) 341
PleI GAGTC 2 cut(s) 154, 302
PpsI GAGTC 2 cut(s) 154, 302
PshAI GACNNNNGTC 1 cut(s) 381
Psp6I CCWGG 3 cut(s) 435, 473, 559
PspGI CCWGG 3 cut(s) 435, 473, 559
PspN4I GGNNCC 2 cut(s) 248, 256
PspPI GGNCC 1 cut(s) 254
RsaI GTAC 2 cut(s) 449, 558
RsaNI GTAC 2 cut(s) 448, 557
SaqAI TTAA 1 cut(s) 318
Sau3AI GATC 1 cut(s) 350
Sau96I GGNCC 1 cut(s) 254
ScaI AGTACT 1 cut(s) 449
SchI GAGTC 2 cut(s) 155, 302
ScrFI CCNGG 3 cut(s) 437, 475, 561
SexAI ACCWGGT 1 cut(s) 473
SfcI CTRYAG 1 cut(s) 578
SgrAI CRCCGGYG 1 cut(s) 290
SphI GCATGC 1 cut(s) 407
Sse9I AATT 2 cut(s) 320, 429
SsiI CCGC 3 cut(s) 280, 299, 329
SspMI CTAG 2 cut(s) 66, 236
StyD4I CCNGG 3 cut(s) 435, 473, 559
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 2 cut(s) 415, 469
TaiI ACGT 4 cut(s) 144, 204, 210, 461
TaqI TCGA 1 cut(s) 335
TaqII GACCGA 1 cut(s) 451
TasI AATT 2 cut(s) 320, 429
TatI WGTACW 1 cut(s) 447
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 3 cut(s) 396, 424, 472
TseFI GTSAC 2 cut(s) 415, 463
Tsp45I GTSAC 2 cut(s) 415, 463
TspRI CASTG 3 cut(s) 396, 424, 472
XapI RAATTY 1 cut(s) 320
XceI RCATGY 1 cut(s) 407
XspI CTAG 2 cut(s) 66, 236
ZrmI AGTACT 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.