Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005419

Physical Location & Seq

Genomic Coordinates Forward (+)

6932763 .. 6935029

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00285700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTTCATAAATAAGCCATCTAGGACTGGTTCAGTGACATCAAGCTTTGAATCCATGAATGGAGAAATCAAGAATTTGGTTTCAACTCTCAACTGCGAAGAAAAGCACTTTCTTATTGCTGTGACTCACCCGCCTCGTGGGCTTAGGCTAGAACTGGCGTTATCTCAAGAAACCGACGATTCTTCTTCCGATTCCAGCAATCACCGGCTGGTTCTGAAACTCTATGACGCCTTGAGCACCCGTGACGTGGCCACCGTGCACGCCGTCCTCGCCGCCGACCTCGAGTGGTGGTTCCATGGTCCGCCGACCCACCAGTTCTTGAAGCGCCTGCTGACCGGCTGCGACAACAAAAACGACGCGTCGTTTCAGTTCAATCATCAGTCTATTTGCTCCGTCGGCCCCGTCGTCCTAGTGGAGGGCTGTGACCCAGAGCAGGAGATCTCCTGGGTACACGCCTGGACCGTCACGGATGGGATAATCACCCAGGTCAGGGAGTACTTCAACACTTCCCTCACCGTCACCCGCCTCGGCAACTCCACCACCTCCGCCAAATCCACACCGTCCAAGTTCTCCAAATCGACGTCCGAGATTACATCGTACCACTGCCCCTCCGTCTGGGAGAGCTCCAACCGGGTCGGGAAGTCGGTTCCGGGTCTGGTCCTCGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002238 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009624 GO:0010033 GO:0010035 GO:0010150 GO:0010193 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0090693 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WI12

Protein Analysis

223

Amino Acids

24.61

Weight (kDa)

6.12

Isoelectric Point (pI)

31.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WI12	PF07107	109 - 223	1.8e-41	Wound-induced protein WI12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10985
fragaria_vesca	FvH4_3g39920
malus_domestica	MD01G1160900.v1.1 MD03G1057800.v1.1 MD04G1079700.v1.1 MD07G1228900.v1.1 MD11G1060200.v1.1
prunus_persica	Prupe.2G258900_v2.0.a1 Prupe.6G046200_v2.0.a1
pyrus_communis	pycom07g20710
rosa_chinensis	RchiOBHm_Chr5g0071891
rosa_laevigata	RLG00000026965 RLG00000036261
rosa_multiflora	Rmu_sc0000809.1_g000024 Rmu_sc0002149.1_g000013 Rmu_sc0029638.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009270 Rroxscaffold_4G00285700
rosa_rugosa	Rorug01G0363800 Rorug05G0415500
rosa_samantha	Rh1AG373900 Rh1BG337300 Rh1CG350600 Rh1DG368300 Rh5BG491400 Rh5CG515300 Rh5DG502900
rosa_wichuraiana	Rw1G032890 Rw5G043820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	584
AccII	CGCG	1 cut(s)	359
AciI	CCGC	5 cut(s)	131, 273, 302, 523, 546
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	73
AcyI	GRCGYC	2 cut(s)	228, 581
AfaI	GTAC	3 cut(s)	450, 497, 599
AfiI	CCNNNNNNNGG	7 cut(s)	137, 247, 415, 433, 489, 490, 615
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	5 cut(s)	50, 84, 322, 373, 502
AjiI	CACGTC	1 cut(s)	247
AjnI	CCWGG	3 cut(s)	443, 455, 483
AluBI	AGCT	2 cut(s)	45, 624
AluI	AGCT	2 cut(s)	45, 624
Alw21I	GWGCWC	3 cut(s)	239, 261, 626
Alw44I	GTGCAC	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	2 cut(s)	249, 397
ApaLI	GTGCAC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	339
ApoI	RAATTY	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	4 cut(s)	299, 398, 459, 658
AsuC2I	CCSGG	2 cut(s)	632, 651
AsuHPI	GGTGA	5 cut(s)	119, 194, 472, 505, 511
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	3 cut(s)	299, 459, 658
BaeGI	GKGCMC	1 cut(s)	261
BalI	TGGCCA	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	626
BauI	CACGAG	1 cut(s)	135
Bbv12I	GWGCWC	3 cut(s)	239, 261, 626
BbvI	GCAGC	1 cut(s)	326
BccI	CCATC	2 cut(s)	25, 464
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	3 cut(s)	445, 457, 485
BcnI	CCSGG	2 cut(s)	632, 651
BfaI	CTAG	3 cut(s)	21, 149, 410
BfoI	RGCGCY	1 cut(s)	328
BglI	GCCNNNNNGGC	1 cut(s)	139
BglII	AGATCT	1 cut(s)	438
BisI	GCNGC	2 cut(s)	273, 340
BlsI	GCNGC	2 cut(s)	274, 341
BmcAI	AGTACT	1 cut(s)	497
Bme1390I	CCNGG	5 cut(s)	445, 457, 485, 632, 651
Bme18I	GGWCC	3 cut(s)	299, 459, 658
BmeT110I	CYCGRG	1 cut(s)	281
BmgBI	CACGTC	1 cut(s)	247
BmgT120I	GGNCC	4 cut(s)	299, 398, 459, 658
BmiI	GGNNCC	3 cut(s)	293, 400, 648
BmrFI	CCNGG	5 cut(s)	445, 457, 485, 632, 651
Bpu10I	CCTNAGC	1 cut(s)	143
BpuEI	CTTGAG	2 cut(s)	150, 253
BpuMI	CCSGG	2 cut(s)	632, 651
BsaHI	GRCGYC	2 cut(s)	228, 581
BsaJI	CCNNGG	4 cut(s)	295, 444, 483, 526
BsaXI	ACNNNNNCTCC	2 cut(s)	593, 623
Bsc4I	CCNNNNNNNGG	7 cut(s)	137, 247, 415, 433, 489, 490, 615
Bse118I	RCCGGY	2 cut(s)	204, 335
Bse1I	ACTGG	3 cut(s)	31, 159, 313
BseBI	CCWGG	3 cut(s)	445, 457, 485
BseDI	CCNNGG	4 cut(s)	295, 444, 483, 526
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	7 cut(s)	137, 247, 415, 433, 489, 490, 615
BseNI	ACTGG	3 cut(s)	31, 159, 313
BseSI	GKGCMC	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	326
Bsh1236I	CGCG	1 cut(s)	359
BshFI	GGCC	2 cut(s)	251, 399
BsiHKAI	GWGCWC	3 cut(s)	239, 261, 626
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	4 cut(s)	205, 336, 631, 650
BslI	CCNNNNNNNGG	7 cut(s)	137, 247, 415, 433, 489, 490, 615
BsnI	GGCC	2 cut(s)	251, 399
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	3 cut(s)	239, 261, 626
Bsp143I	GATC	1 cut(s)	438
Bsp19I	CCATGG	1 cut(s)	295
BspACI	CCGC	5 cut(s)	131, 273, 302, 523, 546
BspANI	GGCC	2 cut(s)	251, 399
BspFNI	CGCG	1 cut(s)	359
BspLI	GGNNCC	3 cut(s)	293, 400, 648
BsrFI	RCCGGY	2 cut(s)	204, 335
BsrI	ACTGG	3 cut(s)	31, 159, 313
BssAI	RCCGGY	2 cut(s)	204, 335
BssECI	CCNNGG	4 cut(s)	295, 444, 483, 526
BssMI	GATC	1 cut(s)	438
BssNI	GRCGYC	2 cut(s)	228, 581
BssSI	CACGAG	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	295
Bst2BI	CACGAG	1 cut(s)	135
Bst2UI	CCWGG	3 cut(s)	445, 457, 485
Bst4CI	ACNGT	4 cut(s)	256, 463, 517, 561
BstACI	GRCGYC	2 cut(s)	228, 581
BstC8I	GCNNGC	2 cut(s)	261, 329
BstDEI	CTNAG	1 cut(s)	143
BstDSI	CCRYGG	1 cut(s)	295
BstENI	CCTNNNNNAGG	1 cut(s)	413
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	1 cut(s)	359
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	1 cut(s)	441
BstMBI	GATC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 269, 396
BstNI	CCWGG	3 cut(s)	445, 457, 485
BstSCI	CCNGG	5 cut(s)	443, 455, 483, 630, 649
BstSLI	GKGCMC	1 cut(s)	261
BstUI	CGCG	1 cut(s)	359
BstV1I	GCAGC	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
BsuRI	GGCC	2 cut(s)	251, 399
BtgI	CCRYGG	1 cut(s)	295
BtrI	CACGTC	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	475
BtsI	GCAGTG	1 cut(s)	601
BtsIMutI	CAGTG	2 cut(s)	39, 601
Cac8I	GCNNGC	2 cut(s)	261, 329
CfoI	GCGC	1 cut(s)	327
Cfr10I	RCCGGY	2 cut(s)	204, 335
Cfr13I	GGNCC	4 cut(s)	299, 398, 459, 658
CseI	GACGC	3 cut(s)	236, 348, 365
Csp6I	GTAC	3 cut(s)	449, 496, 598
CviAII	CATG	2 cut(s)	55, 296
CviQI	GTAC	3 cut(s)	449, 496, 598
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
EaeI	YGGCCR	1 cut(s)	249
EciI	GGCGGA	2 cut(s)	291, 535
Ecl136II	GAGCTC	1 cut(s)	624
Eco130I	CCWWGG	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	626
Eco47I	GGWCC	3 cut(s)	299, 459, 658
Eco53kI	GAGCTC	1 cut(s)	624
Eco88I	CYCGRG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	624
EcoNI	CCTNNNNNAGG	1 cut(s)	413
EcoRII	CCWGG	3 cut(s)	443, 455, 483
EcoT14I	CCWWGG	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	626
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	2 cut(s)	58, 299
FaiI	YATR	4 cut(s)	8, 56, 225, 297
FatI	CATG	2 cut(s)	54, 295
FauI	CCCGC	2 cut(s)	138, 530
Fnu4HI	GCNGC	2 cut(s)	273, 340
FokI	GGATG	1 cut(s)	482
FriOI	GRGCYC	1 cut(s)	626
Fsp4HI	GCNGC	2 cut(s)	273, 340
FspBI	CTAG	3 cut(s)	21, 149, 410
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	2 cut(s)	273, 340
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	2 cut(s)	251, 399
HapII	CCGG	4 cut(s)	205, 336, 631, 650
HgaI	GACGC	3 cut(s)	236, 348, 365
HhaI	GCGC	1 cut(s)	327
Hin1I	GRCGYC	2 cut(s)	228, 581
Hin1II	CATG	2 cut(s)	58, 299
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	43
HinfI	GANTC	4 cut(s)	50, 124, 179, 191
HpaII	CCGG	4 cut(s)	205, 336, 631, 650
HphI	GGTGA	5 cut(s)	119, 194, 472, 505, 511
Hpy166II	GTNNAC	2 cut(s)	259, 451
Hpy188I	TCNGA	3 cut(s)	190, 216, 586
Hpy188III	TCNNGA	4 cut(s)	70, 167, 319, 637
Hpy8I	GTNNAC	2 cut(s)	259, 451
Hpy99I	CGWCG	6 cut(s)	179, 359, 364, 398, 407, 583
HpyCH4III	ACNGT	4 cut(s)	256, 463, 517, 561
HpyCH4IV	ACGT	2 cut(s)	246, 581
HpyCH4V	TGCA	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 269, 396
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	2 cut(s)	246, 581
Hsp92I	GRCGYC	2 cut(s)	228, 581
Hsp92II	CATG	2 cut(s)	58, 299
HspAI	GCGC	1 cut(s)	325
Kzo9I	GATC	1 cut(s)	438
LmnI	GCTCC	2 cut(s)	395, 629
Lsp1109I	GCAGC	1 cut(s)	326
MaeI	CTAG	3 cut(s)	21, 149, 410
MaeII	ACGT	2 cut(s)	246, 581
MaeIII	GTNAC	6 cut(s)	34, 121, 242, 422, 463, 517
MalI	GATC	1 cut(s)	440
MboI	GATC	1 cut(s)	438
MboII	GAAGA	3 cut(s)	110, 174, 177
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	3 cut(s)	239, 261, 626
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	1 cut(s)	73
MluI	ACGCGT	1 cut(s)	357
MluNI	TGGCCA	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	651
MnlI	CCTC	9 cut(s)	144, 278, 290, 409, 521, 536, 553, 619, 671
Mox20I	TGGCCA	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	251
Msp20I	TGGCCA	1 cut(s)	251
MspI	CCGG	4 cut(s)	205, 336, 631, 650
MspR9I	CCNGG	5 cut(s)	445, 457, 485, 632, 651
MvaI	CCWGG	3 cut(s)	445, 457, 485
MvnI	CGCG	1 cut(s)	359
MwoI	GCNNNNNNNGC	3 cut(s)	139, 269, 396
NciI	CCSGG	2 cut(s)	632, 651
NcoI	CCATGG	1 cut(s)	295
NdeII	GATC	1 cut(s)	438
NlaIII	CATG	2 cut(s)	58, 299
NlaIV	GGNNCC	3 cut(s)	293, 400, 648
NmeAIII	GCCGAG	1 cut(s)	507
NmuCI	GTSAC	6 cut(s)	34, 121, 242, 422, 463, 517
PaeR7I	CTCGAG	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	3 cut(s)	252, 402, 459
PfeI	GAWTC	3 cut(s)	50, 179, 191
PkrI	GCNGC	2 cut(s)	274, 341
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Psp124BI	GAGCTC	1 cut(s)	626
Psp6I	CCWGG	3 cut(s)	443, 455, 483
PspGI	CCWGG	3 cut(s)	443, 455, 483
PspN4I	GGNNCC	3 cut(s)	293, 400, 648
PspPI	GGNCC	4 cut(s)	299, 398, 459, 658
PspXI	VCTCGAGB	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	438
RsaI	GTAC	3 cut(s)	450, 497, 599
RsaNI	GTAC	3 cut(s)	449, 496, 598
SacI	GAGCTC	1 cut(s)	626
SatI	GCNGC	2 cut(s)	273, 340
Sau3AI	GATC	1 cut(s)	438
Sau96I	GGNCC	4 cut(s)	299, 398, 459, 658
ScaI	AGTACT	1 cut(s)	497
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	5 cut(s)	445, 457, 485, 632, 651
SduI	GDGCHC	3 cut(s)	239, 261, 626
SetI	ASST	7 cut(s)	47, 249, 282, 489, 545, 584, 626
Sfr274I	CTCGAG	1 cut(s)	281
SinI	GGWCC	3 cut(s)	299, 459, 658
SlaI	CTCGAG	1 cut(s)	281
SmlI	CTYRAG	3 cut(s)	165, 232, 281
SmoI	CTYRAG	3 cut(s)	165, 232, 281
Sse9I	AATT	1 cut(s)	73
SsiI	CCGC	5 cut(s)	131, 273, 302, 523, 546
SspMI	CTAG	3 cut(s)	21, 149, 410
SstI	GAGCTC	1 cut(s)	626
StyD4I	CCNGG	5 cut(s)	443, 455, 483, 630, 649
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	4 cut(s)	256, 463, 517, 561
TaiI	ACGT	2 cut(s)	249, 584
TaqI	TCGA	2 cut(s)	282, 578
TasI	AATT	1 cut(s)	73
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	3 cut(s)	50, 179, 191
TscAI	CASTG	2 cut(s)	39, 608
TseFI	GTSAC	6 cut(s)	34, 121, 242, 422, 463, 517
TseI	GCWGC	1 cut(s)	339
Tsp45I	GTSAC	6 cut(s)	34, 121, 242, 422, 463, 517
TspDTI	ATGAA	1 cut(s)	71
TspGWI	ACGGA	3 cut(s)	382, 482, 601
TspRI	CASTG	2 cut(s)	39, 608
VneI	GTGCAC	1 cut(s)	257
VpaK11BI	GGWCC	3 cut(s)	299, 459, 658
XagI	CCTNNNNNAGG	1 cut(s)	413
XapI	RAATTY	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	281
XspI	CTAG	3 cut(s)	21, 149, 410
ZraI	GACGTC	1 cut(s)	582
ZrmI	AGTACT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.