Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005419

Physical Location & Seq

Genomic Coordinates Reverse (-)

26952106 .. 26953266

Gene Structure 1161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G258900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCGCCTCCTCACCGGCGACCAAAACGAATCGTTTCAATTCAGTCCCCAGTCCATCGATTGCTTCGGGCCCACCGTCCTCGTCGAGGGCTGCGACCGAGATTGCTCCATCTCGTGGGTCCACGCTTGGACCGTCACTCATGGGATAGTCACCCAGGTCAGGGAGTACTTCAACACTTCCCTCACCGTAACCCGCCTCGGTAAAAATACCTCTCCCTCTTCCTCCGCTCAATCCTCGCCGTCCAGCTTCTCTTCCAAGTCCTCCTCATCGACGGCCGAGATTACCTCGTTCCATTGCCCGTCCGTTTGGGAGAGCAGCGTCTCCGATCGGGTCGGGAAGTCCGTGCCGGGTCTGGTCCTCGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002238 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009624 GO:0010033 GO:0010035 GO:0010150 GO:0010193 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0090693 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WI12

Protein Analysis

123

Amino Acids

13.14

Weight (kDa)

5.82

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10985
fragaria_vesca	FvH4_3g39920
malus_domestica	MD01G1160900.v1.1 MD03G1057800.v1.1 MD04G1079700.v1.1 MD07G1228900.v1.1 MD11G1060200.v1.1
prunus_persica	Prupe.2G258900_v2.0.a1 Prupe.6G046200_v2.0.a1
pyrus_communis	pycom07g20710
rosa_chinensis	RchiOBHm_Chr5g0071891
rosa_laevigata	RLG00000026965 RLG00000036261
rosa_multiflora	Rmu_sc0000809.1_g000024 Rmu_sc0002149.1_g000013 Rmu_sc0029638.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009270 Rroxscaffold_4G00285700
rosa_rugosa	Rorug01G0363800 Rorug05G0415500
rosa_samantha	Rh1AG373900 Rh1BG337300 Rh1CG350600 Rh1DG368300 Rh5BG491400 Rh5CG515300 Rh5DG502900
rosa_wichuraiana	Rw1G032890 Rw5G043820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	114
AccBSI	CCGCTC	1 cut(s)	227
AciI	CCGC	2 cut(s)	193, 225
AcoI	YGGCCR	1 cut(s)	273
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	4 cut(s)	85, 114, 159, 160
AgsI	TTSAA	2 cut(s)	38, 172
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	1 cut(s)	246
AluI	AGCT	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	325
AoxI	GGCC	2 cut(s)	68, 273
ApaI	GGGCCC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	90, 315
Asp700I	GAANNNNTTC	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	5 cut(s)	68, 69, 118, 129, 355
AsuC2I	CCSGG	1 cut(s)	348
AsuHPI	GGTGA	3 cut(s)	4, 142, 175
AvaII	GGWCC	3 cut(s)	118, 129, 355
BaeGI	GKGCMC	1 cut(s)	72
BanII	GRGCYC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	77, 327
BccI	CCATC	2 cut(s)	62, 116
BceAI	ACGGC	2 cut(s)	223, 288
BciT130I	CCWGG	1 cut(s)	155
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	325
BisI	GCNGC	2 cut(s)	91, 316
BlsI	GCNGC	2 cut(s)	92, 317
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	2 cut(s)	155, 348
Bme18I	GGWCC	3 cut(s)	118, 129, 355
BmgT120I	GGNCC	5 cut(s)	68, 69, 118, 129, 355
BmiI	GGNNCC	2 cut(s)	70, 119
BmrFI	CCNGG	2 cut(s)	155, 348
BmrI	ACTGGG	1 cut(s)	43
BmuI	ACTGGG	1 cut(s)	43
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BpuMI	CCSGG	1 cut(s)	348
Bsa29I	ATCGAT	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	153, 196
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 114, 159, 160
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	155
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	153, 196
BseLI	CCNNNNNNNGG	4 cut(s)	85, 114, 159, 160
BseMI	GCAATG	1 cut(s)	292
BseNI	ACTGG	1 cut(s)	49
BseRI	GAGGAG	1 cut(s)	253
BseSI	GKGCMC	1 cut(s)	72
BseX3I	CGGCCG	1 cut(s)	273
BseXI	GCAGC	2 cut(s)	77, 327
Bsh1285I	CGRYCG	3 cut(s)	97, 276, 328
BshFI	GGCC	2 cut(s)	70, 275
BshVI	ATCGAT	1 cut(s)	57
BsiEI	CGRYCG	3 cut(s)	97, 276, 328
BsiSI	CCGG	2 cut(s)	15, 347
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	4 cut(s)	85, 114, 159, 160
BsmAI	GTCTC	1 cut(s)	325
BsmBI	CGTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	30
BsnI	GGCC	2 cut(s)	70, 275
Bsp120I	GGGCCC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	2 cut(s)	193, 225
BspANI	GGCC	2 cut(s)	70, 275
BspDI	ATCGAT	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	70, 119
BsrBI	CCGCTC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	153, 196
BssMI	GATC	1 cut(s)	325
BssSI	CACGAG	1 cut(s)	112
Bst2BI	CACGAG	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	3 cut(s)	76, 133, 187
Bst6I	CTCTTC	2 cut(s)	223, 256
BstENI	CCTNNNNNAGG	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	325
BstMCI	CGRYCG	3 cut(s)	97, 276, 328
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	2 cut(s)	153, 346
BstSLI	GKGCMC	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	77, 327
BstZI	CGGCCG	1 cut(s)	273
Bsu15I	ATCGAT	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	70, 275
BsuTUI	ATCGAT	1 cut(s)	57
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	5 cut(s)	68, 69, 118, 129, 355
ClaI	ATCGAT	1 cut(s)	57
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	4 cut(s)	70, 90, 246, 275
CviKI_1	RGCY	4 cut(s)	70, 90, 246, 275
CviQI	GTAC	1 cut(s)	166
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	273
EagI	CGGCCG	1 cut(s)	273
Eam1104I	CTCTTC	2 cut(s)	223, 256
EarI	CTCTTC	2 cut(s)	223, 256
EclXI	CGGCCG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	72
Eco47I	GGWCC	3 cut(s)	118, 129, 355
Eco52I	CGGCCG	1 cut(s)	273
EcoNI	CCTNNNNNAGG	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	1 cut(s)	143
FaiI	YATR	1 cut(s)	141
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	1 cut(s)	139
FauI	CCCGC	1 cut(s)	200
Fnu4HI	GCNGC	2 cut(s)	91, 316
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	91, 316
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	91, 316
HaeIII	GGCC	2 cut(s)	70, 275
HapII	CCGG	2 cut(s)	15, 347
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	143
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	2 cut(s)	15, 347
HphI	GGTGA	3 cut(s)	4, 142, 175
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	2 cut(s)	86, 274
HpyCH4III	ACNGT	3 cut(s)	76, 133, 187
Hsp92II	CATG	1 cut(s)	143
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	8 cut(s)	28, 62, 140, 145, 167, 256, 338, 360
Lsp1109I	GCAGC	2 cut(s)	77, 327
MaeIII	GTNAC	3 cut(s)	133, 148, 187
MalI	GATC	1 cut(s)	327
MbiI	CCGCTC	1 cut(s)	227
MboI	GATC	1 cut(s)	325
MboII	GAAGA	2 cut(s)	210, 243
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	33
MspI	CCGG	2 cut(s)	15, 347
MspR9I	CCNGG	2 cut(s)	155, 348
MvaI	CCWGG	1 cut(s)	155
NciI	CCSGG	1 cut(s)	348
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	1 cut(s)	143
NlaIV	GGNNCC	2 cut(s)	70, 119
NmeAIII	GCCGAG	1 cut(s)	301
NmuCI	GTSAC	2 cut(s)	133, 148
PcsI	WCGNNNNNNNCGW	4 cut(s)	72, 90, 129, 339
PdmI	GAANNNNTTC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	29
PflMI	CCANNNNNTGG	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	92, 317
Ple19I	CGATCG	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	70, 119
PspOMI	GGGCCC	1 cut(s)	68
PspPI	GGNCC	5 cut(s)	68, 69, 118, 129, 355
PvuI	CGATCG	1 cut(s)	328
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SatI	GCNGC	2 cut(s)	91, 316
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	5 cut(s)	68, 69, 118, 129, 355
ScaI	AGTACT	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	155, 348
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	4 cut(s)	159, 212, 248, 287
SgrAI	CRCCGGYG	1 cut(s)	14
SinI	GGWCC	3 cut(s)	118, 129, 355
Sse9I	AATT	1 cut(s)	38
SsiI	CCGC	2 cut(s)	193, 225
StyD4I	CCNGG	2 cut(s)	153, 346
TaaI	ACNGT	3 cut(s)	76, 133, 187
TaqI	TCGA	3 cut(s)	57, 84, 269
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	38
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	29
TseFI	GTSAC	2 cut(s)	133, 148
TseI	GCWGC	2 cut(s)	90, 315
Tsp45I	GTSAC	2 cut(s)	133, 148
TspGWI	ACGGA	2 cut(s)	292, 331
Van91I	CCANNNNNTGG	1 cut(s)	114
VpaK11BI	GGWCC	3 cut(s)	118, 129, 355
XagI	CCTNNNNNAGG	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	33
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.