Rh1BG337300

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0005419
Physical Location & Seq
Reverse (-)
47203678 .. 47211959
8282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG337300.1

Sequence Viewer

Length: 543 bp
ATGAATCAGTCATGTAGAATATTTGCCCAATGGAATGTGCATTATGCACAAGTTGACAATATGAACTGCAATCACCGGCTGGTTCTCAAACTCTATGACGCCTTGAGCACCCGTGACGTGGCCACCGTGCACGCCGTCCTCGCCGCCGACCTCGAGTGGTGGTTCCATGGTCCGCCGACCCACCAGTTCTTGAAGCGCCTGCTGACCGGCTGCGACAACAAGAACGACGCGTCGTTTCTGTTCAATCCCCAGTCTATTTGCTCCGTCGGCCCCGTCGTCCTAGTGGAGGGCTGTGACCCAGAGCAGGAGATCTCCTGGGTACACGCCTGGACCGTCACGGATGGGATAATCACCCAGGTCAGGGAGTACTTCAACACTTCCCTCACCGTCACCCGCCTCGGGAACTCCACCACCTCCGCCAAATCCACACCGTCCAAGTTCTCCAAACCGACGTCCGAGATTACATCGTACCACTGCCCCTCCGTCTGGGAGAGCTCCAACCGGGTCGGGAAGTCGGTTCCGGGTCTGGTCCTCGCAATCTAA

Protein Analysis

180

Amino Acids

20.1

Weight (kDa)

6.64

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WI12 PF07107 66 - 180 2.5e-41 Wound-induced protein WI12
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 455
AccII CGCG 1 cut(s) 230
AciI CCGC 4 cut(s) 144, 173, 394, 417
AcoI YGGCCR 1 cut(s) 120
AcyI GRCGYC 2 cut(s) 99, 452
AfaI GTAC 3 cut(s) 321, 368, 470
AfiI CCNNNNNNNGG 7 cut(s) 118, 286, 304, 360, 361, 399, 486
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 3 cut(s) 193, 244, 373
AjiI CACGTC 1 cut(s) 118
AjnI CCWGG 3 cut(s) 314, 326, 354
AluBI AGCT 1 cut(s) 495
AluI AGCT 1 cut(s) 495
Alw21I GWGCWC 3 cut(s) 110, 132, 497
Alw44I GTGCAC 1 cut(s) 128
Ama87I CYCGRG 2 cut(s) 152, 398
AoxI GGCC 2 cut(s) 120, 268
ApaLI GTGCAC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 210
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 4 cut(s) 170, 269, 330, 529
AsuC2I CCSGG 2 cut(s) 503, 522
AsuHPI GGTGA 4 cut(s) 65, 343, 376, 382
AvaI CYCGRG 2 cut(s) 152, 398
AvaII GGWCC 3 cut(s) 170, 330, 529
BaeGI GKGCMC 1 cut(s) 132
BalI TGGCCA 1 cut(s) 122
BanII GRGCYC 1 cut(s) 497
Bbv12I GWGCWC 3 cut(s) 110, 132, 497
BbvI GCAGC 1 cut(s) 197
BccI CCATC 1 cut(s) 335
BceAI ACGGC 1 cut(s) 119
BciT130I CCWGG 3 cut(s) 316, 328, 356
BcnI CCSGG 2 cut(s) 503, 522
BfaI CTAG 1 cut(s) 281
BfoI RGCGCY 1 cut(s) 199
BglII AGATCT 1 cut(s) 309
BisI GCNGC 2 cut(s) 144, 211
BlsI GCNGC 2 cut(s) 145, 212
BmcAI AGTACT 1 cut(s) 368
Bme1390I CCNGG 5 cut(s) 316, 328, 356, 503, 522
Bme18I GGWCC 3 cut(s) 170, 330, 529
BmeT110I CYCGRG 2 cut(s) 152, 398
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 4 cut(s) 170, 269, 330, 529
BmiI GGNNCC 3 cut(s) 164, 271, 519
BmrFI CCNGG 5 cut(s) 316, 328, 356, 503, 522
BmrI ACTGGG 1 cut(s) 244
BmuI ACTGGG 1 cut(s) 244
BpuEI CTTGAG 1 cut(s) 124
BpuMI CCSGG 2 cut(s) 503, 522
BsaHI GRCGYC 2 cut(s) 99, 452
BsaJI CCNNGG 4 cut(s) 166, 315, 354, 397
BsaXI ACNNNNNCTCC 2 cut(s) 464, 494
Bsc4I CCNNNNNNNGG 7 cut(s) 118, 286, 304, 360, 361, 399, 486
Bse118I RCCGGY 2 cut(s) 75, 206
Bse1I ACTGG 2 cut(s) 184, 250
BseBI CCWGG 3 cut(s) 316, 328, 356
BseDI CCNNGG 4 cut(s) 166, 315, 354, 397
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 7 cut(s) 118, 286, 304, 360, 361, 399, 486
BseNI ACTGG 2 cut(s) 184, 250
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 1 cut(s) 197
Bsh1236I CGCG 1 cut(s) 230
BshFI GGCC 2 cut(s) 122, 270
BsiHKAI GWGCWC 3 cut(s) 110, 132, 497
BsiHKCI CYCGRG 2 cut(s) 152, 398
BsiSI CCGG 4 cut(s) 76, 207, 502, 521
BslI CCNNNNNNNGG 7 cut(s) 118, 286, 304, 360, 361, 399, 486
BsnI GGCC 2 cut(s) 122, 270
BsoBI CYCGRG 2 cut(s) 152, 398
Bsp1286I GDGCHC 3 cut(s) 110, 132, 497
Bsp143I GATC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 166
BspACI CCGC 4 cut(s) 144, 173, 394, 417
BspANI GGCC 2 cut(s) 122, 270
BspFNI CGCG 1 cut(s) 230
BspLI GGNNCC 3 cut(s) 164, 271, 519
BsrFI RCCGGY 2 cut(s) 75, 206
BsrI ACTGG 2 cut(s) 184, 250
BssAI RCCGGY 2 cut(s) 75, 206
BssECI CCNNGG 4 cut(s) 166, 315, 354, 397
BssMI GATC 1 cut(s) 309
BssNI GRCGYC 2 cut(s) 99, 452
BssT1I CCWWGG 1 cut(s) 166
Bst2UI CCWGG 3 cut(s) 316, 328, 356
Bst4CI ACNGT 4 cut(s) 127, 334, 388, 432
BstACI GRCGYC 2 cut(s) 99, 452
BstC8I GCNNGC 2 cut(s) 132, 200
BstDSI CCRYGG 1 cut(s) 166
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 1 cut(s) 346
BstFNI CGCG 1 cut(s) 230
BstH2I RGCGCY 1 cut(s) 199
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 1 cut(s) 312
BstMBI GATC 1 cut(s) 309
BstMWI GCNNNNNNNGC 2 cut(s) 140, 267
BstNI CCWGG 3 cut(s) 316, 328, 356
BstSCI CCNGG 5 cut(s) 314, 326, 354, 501, 520
BstSLI GKGCMC 1 cut(s) 132
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 309
BstYI RGATCY 1 cut(s) 309
BsuRI GGCC 2 cut(s) 122, 270
BtgI CCRYGG 1 cut(s) 166
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 1 cut(s) 472
Cac8I GCNNGC 2 cut(s) 132, 200
CfoI GCGC 1 cut(s) 198
Cfr10I RCCGGY 2 cut(s) 75, 206
Cfr13I GGNCC 4 cut(s) 170, 269, 330, 529
CseI GACGC 3 cut(s) 107, 219, 236
Csp6I GTAC 3 cut(s) 320, 367, 469
CviAII CATG 2 cut(s) 12, 167
CviJI RGCY 6 cut(s) 79, 122, 210, 270, 291, 495
CviKI_1 RGCY 6 cut(s) 79, 122, 210, 270, 291, 495
CviQI GTAC 3 cut(s) 320, 367, 469
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
EaeI YGGCCR 1 cut(s) 120
EciI GGCGGA 2 cut(s) 162, 406
Ecl136II GAGCTC 1 cut(s) 495
Eco130I CCWWGG 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 497
Eco47I GGWCC 3 cut(s) 170, 330, 529
Eco53kI GAGCTC 1 cut(s) 495
Eco88I CYCGRG 2 cut(s) 152, 398
EcoICRI GAGCTC 1 cut(s) 495
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoRII CCWGG 3 cut(s) 314, 326, 354
EcoT14I CCWWGG 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 497
ErhI CCWWGG 1 cut(s) 166
FaeI CATG 2 cut(s) 15, 170
FaiI YATR 5 cut(s) 13, 45, 62, 96, 168
FatI CATG 2 cut(s) 11, 166
FauI CCCGC 1 cut(s) 401
Fnu4HI GCNGC 2 cut(s) 144, 211
FokI GGATG 1 cut(s) 353
FriOI GRGCYC 1 cut(s) 497
Fsp4HI GCNGC 2 cut(s) 144, 211
FspBI CTAG 1 cut(s) 281
GlaI GCGC 1 cut(s) 197
GluI GCNGC 2 cut(s) 144, 211
HaeII RGCGCY 1 cut(s) 199
HaeIII GGCC 2 cut(s) 122, 270
HapII CCGG 4 cut(s) 76, 207, 502, 521
HgaI GACGC 3 cut(s) 107, 219, 236
HhaI GCGC 1 cut(s) 198
Hin1I GRCGYC 2 cut(s) 99, 452
Hin1II CATG 2 cut(s) 15, 170
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 1 cut(s) 4
HpaII CCGG 4 cut(s) 76, 207, 502, 521
HphI GGTGA 4 cut(s) 65, 343, 376, 382
Hpy166II GTNNAC 3 cut(s) 55, 130, 322
Hpy188I TCNGA 1 cut(s) 457
Hpy188III TCNNGA 3 cut(s) 190, 400, 508
Hpy8I GTNNAC 3 cut(s) 55, 130, 322
Hpy99I CGWCG 5 cut(s) 230, 235, 269, 278, 454
HpyCH4III ACNGT 4 cut(s) 127, 334, 388, 432
HpyCH4IV ACGT 2 cut(s) 117, 452
HpyCH4V TGCA 4 cut(s) 40, 47, 69, 130
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 267
HpySE526I ACGT 2 cut(s) 117, 452
Hsp92I GRCGYC 2 cut(s) 99, 452
Hsp92II CATG 2 cut(s) 15, 170
HspAI GCGC 1 cut(s) 196
Kzo9I GATC 1 cut(s) 309
LmnI GCTCC 2 cut(s) 266, 500
Lsp1109I GCAGC 1 cut(s) 197
MaeI CTAG 1 cut(s) 281
MaeII ACGT 2 cut(s) 117, 452
MaeIII GTNAC 4 cut(s) 113, 293, 334, 388
MalI GATC 1 cut(s) 311
MboI GATC 1 cut(s) 309
MflI RGATCY 1 cut(s) 309
MhlI GDGCHC 3 cut(s) 110, 132, 497
MlsI TGGCCA 1 cut(s) 122
MluI ACGCGT 1 cut(s) 228
MluNI TGGCCA 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 522
MnlI CCTC 8 cut(s) 149, 161, 280, 392, 407, 424, 490, 542
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 122
MspI CCGG 4 cut(s) 76, 207, 502, 521
MspR9I CCNGG 5 cut(s) 316, 328, 356, 503, 522
MvaI CCWGG 3 cut(s) 316, 328, 356
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 2 cut(s) 140, 267
NciI CCSGG 2 cut(s) 503, 522
NcoI CCATGG 1 cut(s) 166
NdeII GATC 1 cut(s) 309
NlaIII CATG 2 cut(s) 15, 170
NlaIV GGNNCC 3 cut(s) 164, 271, 519
NmuCI GTSAC 4 cut(s) 113, 293, 334, 388
PaeR7I CTCGAG 1 cut(s) 152
PcsI WCGNNNNNNNCGW 3 cut(s) 123, 273, 330
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 145, 212
Psp124BI GAGCTC 1 cut(s) 497
Psp6I CCWGG 3 cut(s) 314, 326, 354
PspGI CCWGG 3 cut(s) 314, 326, 354
PspN4I GGNNCC 3 cut(s) 164, 271, 519
PspPI GGNCC 4 cut(s) 170, 269, 330, 529
PspXI VCTCGAGB 1 cut(s) 152
PsuI RGATCY 1 cut(s) 309
RsaI GTAC 3 cut(s) 321, 368, 470
RsaNI GTAC 3 cut(s) 320, 367, 469
SacI GAGCTC 1 cut(s) 497
SatI GCNGC 2 cut(s) 144, 211
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 4 cut(s) 170, 269, 330, 529
ScaI AGTACT 1 cut(s) 368
ScrFI CCNGG 5 cut(s) 316, 328, 356, 503, 522
SduI GDGCHC 3 cut(s) 110, 132, 497
SetI ASST 6 cut(s) 120, 153, 360, 416, 455, 497
Sfr274I CTCGAG 1 cut(s) 152
SinI GGWCC 3 cut(s) 170, 330, 529
SlaI CTCGAG 1 cut(s) 152
SmlI CTYRAG 2 cut(s) 103, 152
SmoI CTYRAG 2 cut(s) 103, 152
SsiI CCGC 4 cut(s) 144, 173, 394, 417
SspI AATATT 1 cut(s) 21
SspMI CTAG 1 cut(s) 281
SstI GAGCTC 1 cut(s) 497
StyD4I CCNGG 5 cut(s) 314, 326, 354, 501, 520
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 4 cut(s) 127, 334, 388, 432
TaiI ACGT 2 cut(s) 120, 455
TaqI TCGA 1 cut(s) 153
TatI WGTACW 1 cut(s) 366
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 1 cut(s) 4
TscAI CASTG 1 cut(s) 479
TseFI GTSAC 4 cut(s) 113, 293, 334, 388
TseI GCWGC 1 cut(s) 210
Tsp45I GTSAC 4 cut(s) 113, 293, 334, 388
TspDTI ATGAA 2 cut(s) 17, 77
TspGWI ACGGA 3 cut(s) 253, 353, 472
TspRI CASTG 1 cut(s) 479
VneI GTGCAC 1 cut(s) 128
VpaK11BI GGWCC 3 cut(s) 170, 330, 529
XagI CCTNNNNNAGG 1 cut(s) 284
XhoI CTCGAG 1 cut(s) 152
XspI CTAG 1 cut(s) 281
ZraI GACGTC 1 cut(s) 453
ZrmI AGTACT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.