MD11G1060200.v1.1

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0005419
Physical Location & Seq
Reverse (-)
5227979 .. 5228206
228 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1060200.v1.1.491

Sequence Viewer

Length: 228 bp
ATGGTGCTGGCTGAAGGATACGACGAGGTTCGTTCGGTTTCGTGGGTGCATGCATGGACCGTCAAGGATGGGATTATTACCCAGGTCAGGGAATACTGCAACACGTCCGTGACGGTCACGCGGTTATCCTCACCGGATATCAGATCACAGCGGGGGACTTGCCAGAGCGTCTGGCAGAGTAAGCTCTCGGATAATAAGTCTGTGCCTGGCATCGTTTTGGCGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

76

Amino Acids

8.35

Weight (kDa)

7.81

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WI12 PF07107 2 - 75 1.3e-28 Wound-induced protein WI12
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 121
AciI CCGC 2 cut(s) 121, 151
AcuI CTGAAG 1 cut(s) 33
AfiI CCNNNNNNNGG 2 cut(s) 87, 88
AflIII ACRYGT 1 cut(s) 102
AjiI CACGTC 1 cut(s) 105
AjnI CCWGG 2 cut(s) 81, 205
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 123
AvaII GGWCC 1 cut(s) 57
BccI CCATC 1 cut(s) 62
BciT130I CCWGG 2 cut(s) 83, 207
BciVI GTATCC 1 cut(s) 11
BfoI RGCGCY 1 cut(s) 224
BfuI GTATCC 1 cut(s) 11
Bme1390I CCNGG 2 cut(s) 83, 207
Bme18I GGWCC 1 cut(s) 57
BmgBI CACGTC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 57
BmrFI CCNGG 2 cut(s) 83, 207
BmsI GCATC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 81
BsaWI WCCGGW 1 cut(s) 133
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 88
BseBI CCWGG 2 cut(s) 83, 207
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 2 cut(s) 87, 88
Bsh1236I CGCG 1 cut(s) 121
BsiSI CCGG 1 cut(s) 134
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 87, 88
BsmFI GGGAC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 143
BspACI CCGC 2 cut(s) 121, 151
BspFNI CGCG 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 1 cut(s) 143
Bst2UI CCWGG 2 cut(s) 83, 207
Bst4CI ACNGT 2 cut(s) 61, 115
BstC8I GCNNGC 2 cut(s) 9, 51
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 121
BstH2I RGCGCY 1 cut(s) 224
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 1 cut(s) 146
BstMBI GATC 1 cut(s) 143
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstNI CCWGG 2 cut(s) 83, 207
BstNSI RCATGY 1 cut(s) 53
BstSCI CCNGG 2 cut(s) 81, 205
BstUI CGCG 1 cut(s) 121
BsuI GTATCC 1 cut(s) 11
BtrI CACGTC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 9, 51
CfoI GCGC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 57
CseI GACGC 1 cut(s) 157
CviAII CATG 2 cut(s) 50, 54
CviJI RGCY 2 cut(s) 11, 184
CviKI_1 RGCY 2 cut(s) 11, 184
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
Eco32I GATATC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 33
EcoRII CCWGG 2 cut(s) 81, 205
EcoRV GATATC 1 cut(s) 139
EcoT22I ATGCAT 1 cut(s) 55
FaeI CATG 2 cut(s) 53, 57
FaiI YATR 3 cut(s) 51, 55, 226
FaqI GGGAC 1 cut(s) 169
FatI CATG 2 cut(s) 49, 53
FauI CCCGC 1 cut(s) 144
FokI GGATG 1 cut(s) 80
GlaI GCGC 1 cut(s) 222
HaeII RGCGCY 1 cut(s) 224
HapII CCGG 1 cut(s) 134
HgaI GACGC 1 cut(s) 157
HhaI GCGC 1 cut(s) 223
Hin1II CATG 2 cut(s) 53, 57
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HpaII CCGG 1 cut(s) 134
HphI GGTGA 1 cut(s) 123
Hpy188I TCNGA 2 cut(s) 143, 190
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 8
HpyCH4III ACNGT 2 cut(s) 61, 115
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 3 cut(s) 49, 53, 99
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 2 cut(s) 53, 57
HspAI GCGC 1 cut(s) 221
Kzo9I GATC 1 cut(s) 143
LpnPI CCDG 8 cut(s) 68, 73, 95, 147, 157, 176, 192, 219
LweI GCATC 1 cut(s) 219
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 2 cut(s) 109, 115
MalI GATC 1 cut(s) 145
MboI GATC 1 cut(s) 143
MnlI CCTC 2 cut(s) 19, 139
Mph1103I ATGCAT 1 cut(s) 55
MslI CAYNNNNRTG 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 151
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 2 cut(s) 83, 207
MvaI CCWGG 2 cut(s) 83, 207
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeII GATC 1 cut(s) 143
NlaIII CATG 2 cut(s) 53, 57
NmuCI GTSAC 2 cut(s) 109, 115
NsiI ATGCAT 1 cut(s) 55
NspI RCATGY 1 cut(s) 53
OliI CACNNNNGTG 1 cut(s) 107
PaeI GCATGC 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 81, 205
PspGI CCWGG 2 cut(s) 81, 205
PspPI GGNCC 1 cut(s) 57
RseI CAYNNNNRTG 1 cut(s) 107
Sau3AI GATC 1 cut(s) 143
Sau96I GGNCC 1 cut(s) 57
ScrFI CCNGG 2 cut(s) 83, 207
SetI ASST 4 cut(s) 30, 87, 107, 186
SfaNI GCATC 1 cut(s) 219
SinI GGWCC 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 107
SphI GCATGC 1 cut(s) 53
SsiI CCGC 2 cut(s) 121, 151
StyD4I CCNGG 2 cut(s) 81, 205
TaaI ACNGT 2 cut(s) 61, 115
TaiI ACGT 1 cut(s) 107
TseFI GTSAC 2 cut(s) 109, 115
Tsp45I GTSAC 2 cut(s) 109, 115
TspGWI ACGGA 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 57
XceI RCATGY 1 cut(s) 53
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.