Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000809.1

Orthogroup ID

OG0005419

Physical Location & Seq

Genomic Coordinates Forward (+)

124532 .. 125056

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000809.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ctggcgttatctcaagaaaccgacgattcttcttcttcttccgattccagcaatcaccggctggttctgaaactctatgacgccttgagcacccgtgacgtggccaccgtgcacgccgtcctcgccgccgacctcgagtggtggttccatggtccgccgacccatcagttcttgaagcgcctgctgaccggctgcgacaacaagaacgacgcgtcgtttcagttccatccccagtctatttgctccgtcggccccgtcgtcctagtggagggctgtgacccagagcaggagatctcctgggtacacgcctggaccgtcacggatgggataatcacccaggtcagggagtacttcaacacttccctcaccgtcacccgcctcgggaactccaccagctccgccaaacccgccccgtccaagttctccaagtcgacgtccgagattacatcgtaccactgcccctccgtctgggagagctccaaccgggtcgggaagtcggttccgggtctggtcctcgcaatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002238 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009624 GO:0010033 GO:0010035 GO:0010150 GO:0010193 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0090693 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WI12

Protein Analysis

174

Amino Acids

19.03

Weight (kDa)

5.74

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10985
fragaria_vesca	FvH4_3g39920
malus_domestica	MD01G1160900.v1.1 MD03G1057800.v1.1 MD04G1079700.v1.1 MD07G1228900.v1.1 MD11G1060200.v1.1
prunus_persica	Prupe.2G258900_v2.0.a1 Prupe.6G046200_v2.0.a1
pyrus_communis	pycom07g20710
rosa_chinensis	RchiOBHm_Chr5g0071891
rosa_laevigata	RLG00000026965 RLG00000036261
rosa_multiflora	Rmu_sc0000809.1_g000024 Rmu_sc0002149.1_g000013 Rmu_sc0029638.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009270 Rroxscaffold_4G00285700
rosa_rugosa	Rorug01G0363800 Rorug05G0415500
rosa_samantha	Rh1AG373900 Rh1BG337300 Rh1CG350600 Rh1DG368300 Rh5BG491400 Rh5CG515300 Rh5DG502900
rosa_wichuraiana	Rw1G032890 Rw5G043820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	431
AccII	CGCG	1 cut(s)	212
AciI	CCGC	5 cut(s)	126, 155, 376, 399, 408
AcoI	YGGCCR	1 cut(s)	102
AcyI	GRCGYC	2 cut(s)	81, 434
AfaI	GTAC	3 cut(s)	303, 350, 452
AfiI	CCNNNNNNNGG	7 cut(s)	100, 268, 286, 342, 343, 381, 468
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	175, 355
AjiI	CACGTC	1 cut(s)	100
AjnI	CCWGG	3 cut(s)	296, 308, 336
AluBI	AGCT	2 cut(s)	396, 477
AluI	AGCT	2 cut(s)	396, 477
Alw21I	GWGCWC	3 cut(s)	92, 114, 479
Alw44I	GTGCAC	1 cut(s)	110
Ama87I	CYCGRG	2 cut(s)	134, 380
AoxI	GGCC	2 cut(s)	102, 250
ApaLI	GTGCAC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	4 cut(s)	152, 251, 312, 511
AsuC2I	CCSGG	2 cut(s)	485, 504
AsuHPI	GGTGA	4 cut(s)	47, 325, 358, 364
AvaI	CYCGRG	2 cut(s)	134, 380
AvaII	GGWCC	3 cut(s)	152, 312, 511
BaeGI	GKGCMC	1 cut(s)	114
BalI	TGGCCA	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	479
Bbv12I	GWGCWC	3 cut(s)	92, 114, 479
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	3 cut(s)	171, 234, 317
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	3 cut(s)	298, 310, 338
BcnI	CCSGG	2 cut(s)	485, 504
BfaI	CTAG	1 cut(s)	263
BfoI	RGCGCY	1 cut(s)	181
BglII	AGATCT	1 cut(s)	291
BisI	GCNGC	2 cut(s)	126, 193
BlsI	GCNGC	2 cut(s)	127, 194
BmcAI	AGTACT	1 cut(s)	350
Bme1390I	CCNGG	5 cut(s)	298, 310, 338, 485, 504
Bme18I	GGWCC	3 cut(s)	152, 312, 511
BmeT110I	CYCGRG	2 cut(s)	134, 380
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	4 cut(s)	152, 251, 312, 511
BmiI	GGNNCC	3 cut(s)	146, 253, 501
BmrFI	CCNGG	5 cut(s)	298, 310, 338, 485, 504
BmrI	ACTGGG	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	226
BpuEI	CTTGAG	1 cut(s)	106
BpuMI	CCSGG	2 cut(s)	485, 504
BsaHI	GRCGYC	2 cut(s)	81, 434
BsaJI	CCNNGG	4 cut(s)	148, 297, 336, 379
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	7 cut(s)	100, 268, 286, 342, 343, 381, 468
Bse118I	RCCGGY	2 cut(s)	57, 188
Bse1I	ACTGG	1 cut(s)	232
BseBI	CCWGG	3 cut(s)	298, 310, 338
BseDI	CCNNGG	4 cut(s)	148, 297, 336, 379
BseGI	GGATG	2 cut(s)	226, 328
BseLI	CCNNNNNNNGG	7 cut(s)	100, 268, 286, 342, 343, 381, 468
BseNI	ACTGG	1 cut(s)	232
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	179
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	104, 252
BsiHKAI	GWGCWC	3 cut(s)	92, 114, 479
BsiHKCI	CYCGRG	2 cut(s)	134, 380
BsiSI	CCGG	4 cut(s)	58, 189, 484, 503
BslI	CCNNNNNNNGG	7 cut(s)	100, 268, 286, 342, 343, 381, 468
BsnI	GGCC	2 cut(s)	104, 252
BsoBI	CYCGRG	2 cut(s)	134, 380
Bsp1286I	GDGCHC	3 cut(s)	92, 114, 479
Bsp143I	GATC	1 cut(s)	291
Bsp19I	CCATGG	1 cut(s)	148
BspACI	CCGC	5 cut(s)	126, 155, 376, 399, 408
BspANI	GGCC	2 cut(s)	104, 252
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	3 cut(s)	146, 253, 501
BsrFI	RCCGGY	2 cut(s)	57, 188
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	2 cut(s)	57, 188
BssECI	CCNNGG	4 cut(s)	148, 297, 336, 379
BssMI	GATC	1 cut(s)	291
BssNI	GRCGYC	2 cut(s)	81, 434
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	3 cut(s)	298, 310, 338
Bst4CI	ACNGT	3 cut(s)	109, 316, 370
BstACI	GRCGYC	2 cut(s)	81, 434
BstC8I	GCNNGC	2 cut(s)	114, 182
BstDSI	CCRYGG	1 cut(s)	148
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	226, 328
BstFNI	CGCG	1 cut(s)	212
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	1 cut(s)	294
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 249, 407
BstNI	CCWGG	3 cut(s)	298, 310, 338
BstSCI	CCNGG	5 cut(s)	296, 308, 336, 483, 502
BstSLI	GKGCMC	1 cut(s)	114
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	104, 252
BtgI	CCRYGG	1 cut(s)	148
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	226, 328
BtsI	GCAGTG	1 cut(s)	454
BtsIMutI	CAGTG	1 cut(s)	454
Cac8I	GCNNGC	2 cut(s)	114, 182
CfoI	GCGC	1 cut(s)	180
Cfr10I	RCCGGY	2 cut(s)	57, 188
Cfr13I	GGNCC	4 cut(s)	152, 251, 312, 511
CseI	GACGC	3 cut(s)	89, 201, 218
Csp6I	GTAC	3 cut(s)	302, 349, 451
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	7 cut(s)	61, 104, 192, 252, 273, 396, 477
CviKI_1	RGCY	7 cut(s)	61, 104, 192, 252, 273, 396, 477
CviQI	GTAC	3 cut(s)	302, 349, 451
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
EaeI	YGGCCR	1 cut(s)	102
EciI	GGCGGA	2 cut(s)	144, 388
Ecl136II	GAGCTC	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	479
Eco47I	GGWCC	3 cut(s)	152, 312, 511
Eco53kI	GAGCTC	1 cut(s)	477
Eco88I	CYCGRG	2 cut(s)	134, 380
EcoICRI	GAGCTC	1 cut(s)	477
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoRII	CCWGG	3 cut(s)	296, 308, 336
EcoT14I	CCWWGG	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	1 cut(s)	152
FaiI	YATR	2 cut(s)	78, 150
FatI	CATG	1 cut(s)	148
FauI	CCCGC	2 cut(s)	383, 415
FblI	GTMKAC	1 cut(s)	431
Fnu4HI	GCNGC	2 cut(s)	126, 193
FokI	GGATG	2 cut(s)	213, 335
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	2 cut(s)	126, 193
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	2 cut(s)	126, 193
HaeII	RGCGCY	1 cut(s)	181
HaeIII	GGCC	2 cut(s)	104, 252
HapII	CCGG	4 cut(s)	58, 189, 484, 503
HgaI	GACGC	3 cut(s)	89, 201, 218
HhaI	GCGC	1 cut(s)	180
Hin1I	GRCGYC	2 cut(s)	81, 434
Hin1II	CATG	1 cut(s)	152
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HinfI	GANTC	2 cut(s)	26, 44
HpaII	CCGG	4 cut(s)	58, 189, 484, 503
HphI	GGTGA	4 cut(s)	47, 325, 358, 364
Hpy166II	GTNNAC	3 cut(s)	112, 304, 432
Hpy188I	TCNGA	3 cut(s)	43, 69, 439
Hpy188III	TCNNGA	4 cut(s)	14, 172, 382, 490
Hpy8I	GTNNAC	3 cut(s)	112, 304, 432
Hpy99I	CGWCG	6 cut(s)	26, 212, 217, 251, 260, 436
HpyCH4III	ACNGT	3 cut(s)	109, 316, 370
HpyCH4IV	ACGT	2 cut(s)	99, 434
HpyCH4V	TGCA	1 cut(s)	112
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 249, 407
HpySE526I	ACGT	2 cut(s)	99, 434
Hsp92I	GRCGYC	2 cut(s)	81, 434
Hsp92II	CATG	1 cut(s)	152
HspAI	GCGC	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	3 cut(s)	248, 401, 482
Lsp1109I	GCAGC	1 cut(s)	179
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	2 cut(s)	99, 434
MaeIII	GTNAC	4 cut(s)	95, 275, 316, 370
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	4 cut(s)	21, 24, 27, 30
MflI	RGATCY	1 cut(s)	291
MhlI	GDGCHC	3 cut(s)	92, 114, 479
MlsI	TGGCCA	1 cut(s)	104
MluI	ACGCGT	1 cut(s)	210
MluNI	TGGCCA	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	7 cut(s)	131, 143, 262, 374, 389, 472, 524
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
Msp20I	TGGCCA	1 cut(s)	104
MspI	CCGG	4 cut(s)	58, 189, 484, 503
MspR9I	CCNGG	5 cut(s)	298, 310, 338, 485, 504
MvaI	CCWGG	3 cut(s)	298, 310, 338
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	3 cut(s)	122, 249, 407
NciI	CCSGG	2 cut(s)	485, 504
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	1 cut(s)	291
NlaIII	CATG	1 cut(s)	152
NlaIV	GGNNCC	3 cut(s)	146, 253, 501
NmuCI	GTSAC	4 cut(s)	95, 275, 316, 370
PaeR7I	CTCGAG	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	3 cut(s)	105, 255, 312
PfeI	GAWTC	2 cut(s)	26, 44
PkrI	GCNGC	2 cut(s)	127, 194
Psp124BI	GAGCTC	1 cut(s)	479
Psp6I	CCWGG	3 cut(s)	296, 308, 336
PspGI	CCWGG	3 cut(s)	296, 308, 336
PspN4I	GGNNCC	3 cut(s)	146, 253, 501
PspPI	GGNCC	4 cut(s)	152, 251, 312, 511
PspXI	VCTCGAGB	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	291
RsaI	GTAC	3 cut(s)	303, 350, 452
RsaNI	GTAC	3 cut(s)	302, 349, 451
SacI	GAGCTC	1 cut(s)	479
SalI	GTCGAC	1 cut(s)	430
SatI	GCNGC	2 cut(s)	126, 193
Sau3AI	GATC	1 cut(s)	291
Sau96I	GGNCC	4 cut(s)	152, 251, 312, 511
ScaI	AGTACT	1 cut(s)	350
ScrFI	CCNGG	5 cut(s)	298, 310, 338, 485, 504
SduI	GDGCHC	3 cut(s)	92, 114, 479
SetI	ASST	6 cut(s)	102, 135, 342, 398, 437, 479
Sfr274I	CTCGAG	1 cut(s)	134
SinI	GGWCC	3 cut(s)	152, 312, 511
SlaI	CTCGAG	1 cut(s)	134
SmlI	CTYRAG	3 cut(s)	12, 85, 134
SmoI	CTYRAG	3 cut(s)	12, 85, 134
SsiI	CCGC	5 cut(s)	126, 155, 376, 399, 408
SspMI	CTAG	1 cut(s)	263
SstI	GAGCTC	1 cut(s)	479
StyD4I	CCNGG	5 cut(s)	296, 308, 336, 483, 502
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	3 cut(s)	109, 316, 370
TaiI	ACGT	2 cut(s)	102, 437
TaqI	TCGA	2 cut(s)	135, 431
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	2 cut(s)	26, 44
TscAI	CASTG	1 cut(s)	461
TseFI	GTSAC	4 cut(s)	95, 275, 316, 370
TseI	GCWGC	1 cut(s)	192
Tsp45I	GTSAC	4 cut(s)	95, 275, 316, 370
TspGWI	ACGGA	3 cut(s)	235, 335, 454
TspRI	CASTG	1 cut(s)	461
VneI	GTGCAC	1 cut(s)	110
VpaK11BI	GGWCC	3 cut(s)	152, 312, 511
XagI	CCTNNNNNAGG	1 cut(s)	266
XhoI	CTCGAG	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	431
XspI	CTAG	1 cut(s)	263
ZraI	GACGTC	1 cut(s)	435
ZrmI	AGTACT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.