Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005419

Physical Location & Seq

Genomic Coordinates Reverse (-)

26636720 .. 26639870

Gene Structure 3151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1160900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTCCCAAGTGGTACATTTCTTCCTAATGTTGGAAGATGTCCCAAGTTCGAATGTTAGGCAAGAACTGGCTAACTCTCTGGAAGCTCTGGAAGACACTGAGTCCAGCAATCGAAGGGTGGTGCTCGCCCTTTATGACGCCCTGAGCTCCCGCGACGTCGACACGGTGCTCAAGATCGTCGCCCCCGACCTCGAGTGGTGGTTCCATGGTCCGCCGACCCACCAGTTCTTGATGCGACTCCTCACCGGCTCCCAAAACGAATCGTTTCAGTTCGTCCCCCAGTCCATCGCCTCCTTCGGCCCCACCGTCCTCGTCGAGGGCTGCGACCGCGACTGCTCCATTTCCTGGGTCCACGCCTGGACCGTTGCCAGTGGTGTAGTCACCGGCGTCCGCGAGTACTTCAACACTACCCTCACTGTCACGCGCCTGGGAAACAACAGCCACAGAAACTCTCCCGCCTCCTCCGCTAAATCCTCGTCCGGGTTTTCCTACGAGGCGTCGTCGTCGGCGGCCGAGATTACCTCGTTCCATTTCCCGTCGGTTTGGGAGAGCAGCATCTCCAATCGGGCCGGGAAGTCCATGCCGGGTCTGGTCCTCGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002238 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009624 GO:0010033 GO:0010035 GO:0010150 GO:0010193 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0090693 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WI12

Protein Analysis

202

Amino Acids

22.03

Weight (kDa)

5.28

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WI12	PF07107	78 - 201	3e-38	Wound-induced protein WI12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10985
fragaria_vesca	FvH4_3g39920
malus_domestica	MD01G1160900.v1.1 MD03G1057800.v1.1 MD04G1079700.v1.1 MD07G1228900.v1.1 MD11G1060200.v1.1
prunus_persica	Prupe.2G258900_v2.0.a1 Prupe.6G046200_v2.0.a1
pyrus_communis	pycom07g20710
rosa_chinensis	RchiOBHm_Chr5g0071891
rosa_laevigata	RLG00000026965 RLG00000036261
rosa_multiflora	Rmu_sc0000809.1_g000024 Rmu_sc0002149.1_g000013 Rmu_sc0029638.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009270 Rroxscaffold_4G00285700
rosa_rugosa	Rorug01G0363800 Rorug05G0415500
rosa_samantha	Rh1AG373900 Rh1BG337300 Rh1CG350600 Rh1DG368300 Rh5BG491400 Rh5CG515300 Rh5DG502900
rosa_wichuraiana	Rw1G032890 Rw5G043820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	159
AccB7I	CCANNNNNTGG	1 cut(s)	345
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	4 cut(s)	153, 330, 393, 424
AciI	CCGC	7 cut(s)	151, 212, 328, 391, 456, 465, 509
AcoI	YGGCCR	1 cut(s)	510
AcyI	GRCGYC	4 cut(s)	138, 156, 387, 497
AfaI	GTAC	2 cut(s)	15, 398
AfiI	CCNNNNNNNGG	4 cut(s)	31, 316, 345, 480
AgsI	TTSAA	1 cut(s)	403
AhdI	GACNNNNNGTC	1 cut(s)	100
AjnI	CCWGG	3 cut(s)	344, 356, 426
AluBI	AGCT	2 cut(s)	86, 147
AluI	AGCT	2 cut(s)	86, 147
Alw21I	GWGCWC	3 cut(s)	126, 149, 171
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	3 cut(s)	298, 510, 567
ApeKI	GCWGC	2 cut(s)	321, 552
Asp700I	GAANNNNTTC	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	6 cut(s)	209, 299, 349, 360, 567, 592
AsuC2I	CCSGG	3 cut(s)	481, 571, 585
AsuHPI	GGTGA	2 cut(s)	235, 373
AsuII	TTCGAA	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	4 cut(s)	209, 349, 360, 592
BanII	GRGCYC	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	3 cut(s)	126, 149, 171
BbvI	GCAGC	2 cut(s)	308, 564
BccI	CCATC	1 cut(s)	293
BciT130I	CCWGG	3 cut(s)	346, 358, 428
BcnI	CCSGG	3 cut(s)	481, 571, 585
BisI	GCNGC	3 cut(s)	322, 510, 553
BlsI	GCNGC	3 cut(s)	323, 511, 554
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	6 cut(s)	346, 358, 428, 481, 571, 585
Bme18I	GGWCC	4 cut(s)	209, 349, 360, 592
BmeRI	GACNNNNNGTC	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	6 cut(s)	209, 299, 349, 360, 567, 592
BmiI	GGNNCC	4 cut(s)	203, 250, 301, 350
BmrFI	CCNGG	6 cut(s)	346, 358, 428, 481, 571, 585
BmrI	ACTGGG	1 cut(s)	274
BmsI	GCATC	2 cut(s)	222, 564
BmuI	ACTGGG	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	99
BplI	GAGNNNNNCTC	2 cut(s)	506, 538
Bpu10I	CCTNAGC	1 cut(s)	143
Bpu14I	TTCGAA	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	3 cut(s)	481, 571, 585
BsaHI	GRCGYC	4 cut(s)	138, 156, 387, 497
BsaJI	CCNNGG	3 cut(s)	205, 345, 427
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 316, 345, 480
Bse118I	RCCGGY	2 cut(s)	245, 383
Bse1I	ACTGG	4 cut(s)	72, 223, 280, 369
BseBI	CCWGG	3 cut(s)	346, 358, 428
BseDI	CCNNGG	3 cut(s)	205, 345, 427
BseLI	CCNNNNNNNGG	4 cut(s)	31, 316, 345, 480
BseMII	CTCAG	2 cut(s)	90, 134
BseNI	ACTGG	4 cut(s)	72, 223, 280, 369
BseRI	GAGGAG	2 cut(s)	230, 451
BseX3I	CGGCCG	1 cut(s)	510
BseXI	GCAGC	2 cut(s)	308, 564
Bsh1236I	CGCG	4 cut(s)	153, 330, 393, 424
Bsh1285I	CGRYCG	2 cut(s)	328, 513
BshFI	GGCC	3 cut(s)	300, 512, 569
BsiEI	CGRYCG	2 cut(s)	328, 513
BsiHKAI	GWGCWC	3 cut(s)	126, 149, 171
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	5 cut(s)	246, 384, 480, 570, 584
BslFI	GGGAC	2 cut(s)	26, 260
BslI	CCNNNNNNNGG	4 cut(s)	31, 316, 345, 480
BsmFI	GGGAC	2 cut(s)	26, 260
BsnI	GGCC	3 cut(s)	300, 512, 569
BsoBI	CYCGRG	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	3 cut(s)	126, 149, 171
Bsp143I	GATC	1 cut(s)	174
Bsp19I	CCATGG	1 cut(s)	205
BspACI	CCGC	7 cut(s)	151, 212, 328, 391, 456, 465, 509
BspANI	GGCC	3 cut(s)	300, 512, 569
BspCNI	CTCAG	2 cut(s)	91, 135
BspFNI	CGCG	4 cut(s)	153, 330, 393, 424
BspLI	GGNNCC	4 cut(s)	203, 250, 301, 350
BspT104I	TTCGAA	1 cut(s)	50
BsrFI	RCCGGY	2 cut(s)	245, 383
BsrI	ACTGG	4 cut(s)	72, 223, 280, 369
BssAI	RCCGGY	2 cut(s)	245, 383
BssECI	CCNNGG	3 cut(s)	205, 345, 427
BssMI	GATC	1 cut(s)	174
BssNI	GRCGYC	4 cut(s)	138, 156, 387, 497
BssT1I	CCWWGG	1 cut(s)	205
Bst2UI	CCWGG	3 cut(s)	346, 358, 428
Bst4CI	ACNGT	4 cut(s)	166, 307, 364, 418
BstACI	GRCGYC	4 cut(s)	138, 156, 387, 497
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	99, 143
BstDSI	CCRYGG	1 cut(s)	205
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstFNI	CGCG	4 cut(s)	153, 330, 393, 424
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMCI	CGRYCG	2 cut(s)	328, 513
BstMWI	GCNNNNNNNGC	2 cut(s)	327, 464
BstNI	CCWGG	3 cut(s)	346, 358, 428
BstSCI	CCNGG	6 cut(s)	344, 356, 426, 479, 569, 583
BstUI	CGCG	4 cut(s)	153, 330, 393, 424
BstV1I	GCAGC	2 cut(s)	308, 564
BstV2I	GAAGAC	1 cut(s)	99
BstZI	CGGCCG	1 cut(s)	510
BsuRI	GGCC	3 cut(s)	300, 512, 569
BtgI	CCRYGG	1 cut(s)	205
BtgZI	GCGATG	1 cut(s)	271
BtsIMutI	CAGTG	3 cut(s)	96, 376, 414
Cac8I	GCNNGC	1 cut(s)	126
CfoI	GCGC	1 cut(s)	426
Cfr10I	RCCGGY	2 cut(s)	245, 383
Cfr13I	GGNCC	6 cut(s)	209, 299, 349, 360, 567, 592
CseI	GACGC	3 cut(s)	146, 376, 486
Csp6I	GTAC	2 cut(s)	14, 397
CviAII	CATG	2 cut(s)	206, 580
CviJI	RGCY	9 cut(s)	71, 86, 147, 249, 300, 321, 441, 512, 569
CviKI_1	RGCY	9 cut(s)	71, 86, 147, 249, 300, 321, 441, 512, 569
CviQI	GTAC	2 cut(s)	14, 397
DdeI	CTNAG	2 cut(s)	99, 143
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
DriI	GACNNNNNGTC	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	510
EagI	CGGCCG	1 cut(s)	510
Eam1105I	GACNNNNNGTC	1 cut(s)	100
EciI	GGCGGA	1 cut(s)	201
Ecl136II	GAGCTC	1 cut(s)	147
EclXI	CGGCCG	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	149
Eco47I	GGWCC	4 cut(s)	209, 349, 360, 592
Eco52I	CGGCCG	1 cut(s)	510
Eco53kI	GAGCTC	1 cut(s)	147
Eco88I	CYCGRG	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	147
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoRII	CCWGG	3 cut(s)	344, 356, 426
EcoT14I	CCWWGG	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	2 cut(s)	209, 583
FaiI	YATR	3 cut(s)	135, 207, 581
FaqI	GGGAC	2 cut(s)	26, 260
FatI	CATG	2 cut(s)	205, 579
FauI	CCCGC	2 cut(s)	158, 463
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	3 cut(s)	322, 510, 553
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	3 cut(s)	322, 510, 553
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	3 cut(s)	322, 510, 553
HaeIII	GGCC	3 cut(s)	300, 512, 569
HapII	CCGG	5 cut(s)	246, 384, 480, 570, 584
HgaI	GACGC	3 cut(s)	146, 376, 486
HhaI	GCGC	1 cut(s)	426
Hin1I	GRCGYC	4 cut(s)	138, 156, 387, 497
Hin1II	CATG	2 cut(s)	209, 583
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	3 cut(s)	101, 237, 260
HpaII	CCGG	5 cut(s)	246, 384, 480, 570, 584
HphI	GGTGA	2 cut(s)	235, 373
Hpy166II	GTNNAC	2 cut(s)	160, 352
Hpy188III	TCNNGA	4 cut(s)	80, 89, 172, 229
Hpy8I	GTNNAC	2 cut(s)	160, 352
Hpy99I	CGWCG	8 cut(s)	158, 161, 182, 317, 502, 505, 508, 541
HpyAV	CCTTC	2 cut(s)	108, 304
HpyCH4III	ACNGT	4 cut(s)	166, 307, 364, 418
HpyCH4IV	ACGT	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	2 cut(s)	327, 464
HpyF3I	CTNAG	2 cut(s)	99, 143
HpySE526I	ACGT	1 cut(s)	156
Hsp92I	GRCGYC	4 cut(s)	138, 156, 387, 497
Hsp92II	CATG	2 cut(s)	209, 583
HspAI	GCGC	1 cut(s)	424
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	3 cut(s)	152, 254, 341
Lsp1109I	GCAGC	2 cut(s)	308, 564
LweI	GCATC	2 cut(s)	222, 564
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	379, 418
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	3 cut(s)	13, 47, 104
MhlI	GDGCHC	3 cut(s)	126, 149, 171
MlyI	GAGTC	2 cut(s)	110, 231
MmeI	TCCRAC	1 cut(s)	12
MroXI	GAANNNNTTC	1 cut(s)	264
MspI	CCGG	5 cut(s)	246, 384, 480, 570, 584
MspR9I	CCNGG	6 cut(s)	346, 358, 428, 481, 571, 585
MvaI	CCWGG	3 cut(s)	346, 358, 428
MvnI	CGCG	4 cut(s)	153, 330, 393, 424
MwoI	GCNNNNNNNGC	2 cut(s)	327, 464
NciI	CCSGG	3 cut(s)	481, 571, 585
NcoI	CCATGG	1 cut(s)	205
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	2 cut(s)	209, 583
NlaIV	GGNNCC	4 cut(s)	203, 250, 301, 350
NmeAIII	GCCGAG	1 cut(s)	538
NmuCI	GTSAC	2 cut(s)	379, 418
NspV	TTCGAA	1 cut(s)	50
PaeR7I	CTCGAG	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	4 cut(s)	183, 303, 321, 360
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	260
PflMI	CCANNNNNTGG	1 cut(s)	345
PkrI	GCNGC	3 cut(s)	323, 511, 554
PleI	GAGTC	2 cut(s)	109, 231
PpsI	GAGTC	2 cut(s)	109, 231
Psp124BI	GAGCTC	1 cut(s)	149
Psp6I	CCWGG	3 cut(s)	344, 356, 426
PspGI	CCWGG	3 cut(s)	344, 356, 426
PspN4I	GGNNCC	4 cut(s)	203, 250, 301, 350
PspPI	GGNCC	6 cut(s)	209, 299, 349, 360, 567, 592
PspXI	VCTCGAGB	1 cut(s)	191
RsaI	GTAC	2 cut(s)	15, 398
RsaNI	GTAC	2 cut(s)	14, 397
SacI	GAGCTC	1 cut(s)	149
SalI	GTCGAC	1 cut(s)	158
SatI	GCNGC	3 cut(s)	322, 510, 553
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	6 cut(s)	209, 299, 349, 360, 567, 592
ScaI	AGTACT	1 cut(s)	398
SchI	GAGTC	2 cut(s)	110, 231
ScrFI	CCNGG	6 cut(s)	346, 358, 428, 481, 571, 585
SduI	GDGCHC	3 cut(s)	126, 149, 171
SetI	ASST	5 cut(s)	88, 149, 159, 192, 524
SfaNI	GCATC	2 cut(s)	222, 564
Sfr274I	CTCGAG	1 cut(s)	191
SfuI	TTCGAA	1 cut(s)	50
SgrAI	CRCCGGYG	1 cut(s)	383
SinI	GGWCC	4 cut(s)	209, 349, 360, 592
SlaI	CTCGAG	1 cut(s)	191
SmlI	CTYRAG	2 cut(s)	170, 191
SmoI	CTYRAG	2 cut(s)	170, 191
SsiI	CCGC	7 cut(s)	151, 212, 328, 391, 456, 465, 509
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	6 cut(s)	344, 356, 426, 479, 569, 583
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	4 cut(s)	166, 307, 364, 418
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	5 cut(s)	50, 112, 159, 192, 315
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	1 cut(s)	260
TscAI	CASTG	3 cut(s)	103, 376, 421
TseFI	GTSAC	2 cut(s)	379, 418
TseI	GCWGC	2 cut(s)	321, 552
Tsp45I	GTSAC	2 cut(s)	379, 418
TspRI	CASTG	3 cut(s)	103, 376, 421
Van91I	CCANNNNNTGG	1 cut(s)	345
VpaK11BI	GGWCC	4 cut(s)	209, 349, 360, 592
XagI	CCTNNNNNAGG	1 cut(s)	314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XhoI	CTCGAG	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	264
ZraI	GACGTC	1 cut(s)	157
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.