Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029638.1

Orthogroup ID

OG0005419

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1745

Gene Structure 1745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029638.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 526 bp

gctagaactggcgttatctcaagaaaccgacgattcttcttccgattccagcaatcaccggctggttctgaaactctatgacgccttgagcacccgtgacgtggccaccgtgcacgccgtcctcgccgccgacctcgagtggtggttccatggtccgccgacccatcagttcttgaagcgcctgctgaccggctgcgacaacaagaacgacgcgtcgtttcagttccatccccagtctatttgctccgtcggccccgtcgtcctagtggagggctgtgacccagagcaggagatctcctgggtacacgcctggaccgtcacggatgggataatcacccaggtcagggagtacttcaacacttccctcaccgtcacccgcctcgggaactccaccagctccgccaaacccgccccgtccaagttctccaagtcgacgtccgagattacatcgtaccactgcccctccgtctgggagagctccaaccgggtcgggaagtcggttccgggtctggtcctcgcaatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002238 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009624 GO:0010033 GO:0010035 GO:0010150 GO:0010193 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0090693 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WI12

Protein Analysis

174

Amino Acids

19.1

Weight (kDa)

5.56

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10985
fragaria_vesca	FvH4_3g39920
malus_domestica	MD01G1160900.v1.1 MD03G1057800.v1.1 MD04G1079700.v1.1 MD07G1228900.v1.1 MD11G1060200.v1.1
prunus_persica	Prupe.2G258900_v2.0.a1 Prupe.6G046200_v2.0.a1
pyrus_communis	pycom07g20710
rosa_chinensis	RchiOBHm_Chr5g0071891
rosa_laevigata	RLG00000026965 RLG00000036261
rosa_multiflora	Rmu_sc0000809.1_g000024 Rmu_sc0002149.1_g000013 Rmu_sc0029638.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009270 Rroxscaffold_4G00285700
rosa_rugosa	Rorug01G0363800 Rorug05G0415500
rosa_samantha	Rh1AG373900 Rh1BG337300 Rh1CG350600 Rh1DG368300 Rh5BG491400 Rh5CG515300 Rh5DG502900
rosa_wichuraiana	Rw1G032890 Rw5G043820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	438
AccI	GTMKAC	1 cut(s)	432
AccII	CGCG	1 cut(s)	213
AciI	CCGC	5 cut(s)	127, 156, 377, 400, 409
AcoI	YGGCCR	1 cut(s)	103
AcyI	GRCGYC	2 cut(s)	82, 435
AfaI	GTAC	3 cut(s)	304, 351, 453
AfiI	CCNNNNNNNGG	7 cut(s)	101, 269, 287, 343, 344, 382, 469
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	2 cut(s)	176, 356
AjiI	CACGTC	1 cut(s)	101
AjnI	CCWGG	3 cut(s)	297, 309, 337
AluBI	AGCT	2 cut(s)	397, 478
AluI	AGCT	2 cut(s)	397, 478
Alw21I	GWGCWC	3 cut(s)	93, 115, 480
Alw44I	GTGCAC	1 cut(s)	111
Ama87I	CYCGRG	2 cut(s)	135, 381
AoxI	GGCC	2 cut(s)	103, 251
ApaLI	GTGCAC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	193
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	4 cut(s)	153, 252, 313, 512
AsuC2I	CCSGG	2 cut(s)	486, 505
AsuHPI	GGTGA	4 cut(s)	48, 326, 359, 365
AvaI	CYCGRG	2 cut(s)	135, 381
AvaII	GGWCC	3 cut(s)	153, 313, 512
BaeGI	GKGCMC	1 cut(s)	115
BalI	TGGCCA	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	480
Bbv12I	GWGCWC	3 cut(s)	93, 115, 480
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	3 cut(s)	172, 235, 318
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	3 cut(s)	299, 311, 339
BcnI	CCSGG	2 cut(s)	486, 505
BfaI	CTAG	2 cut(s)	3, 264
BfoI	RGCGCY	1 cut(s)	182
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	2 cut(s)	127, 194
BlsI	GCNGC	2 cut(s)	128, 195
BmcAI	AGTACT	1 cut(s)	351
Bme1390I	CCNGG	5 cut(s)	299, 311, 339, 486, 505
Bme18I	GGWCC	3 cut(s)	153, 313, 512
BmeT110I	CYCGRG	2 cut(s)	135, 381
BmgBI	CACGTC	1 cut(s)	101
BmgT120I	GGNCC	4 cut(s)	153, 252, 313, 512
BmiI	GGNNCC	3 cut(s)	147, 254, 502
BmrFI	CCNGG	5 cut(s)	299, 311, 339, 486, 505
BmrI	ACTGGG	1 cut(s)	227
BmuI	ACTGGG	1 cut(s)	227
BpuEI	CTTGAG	2 cut(s)	4, 107
BpuMI	CCSGG	2 cut(s)	486, 505
BsaHI	GRCGYC	2 cut(s)	82, 435
BsaJI	CCNNGG	4 cut(s)	149, 298, 337, 380
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bsc4I	CCNNNNNNNGG	7 cut(s)	101, 269, 287, 343, 344, 382, 469
Bse118I	RCCGGY	2 cut(s)	58, 189
Bse1I	ACTGG	2 cut(s)	13, 233
BseBI	CCWGG	3 cut(s)	299, 311, 339
BseDI	CCNNGG	4 cut(s)	149, 298, 337, 380
BseGI	GGATG	2 cut(s)	227, 329
BseLI	CCNNNNNNNGG	7 cut(s)	101, 269, 287, 343, 344, 382, 469
BseNI	ACTGG	2 cut(s)	13, 233
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	2 cut(s)	105, 253
BsiHKAI	GWGCWC	3 cut(s)	93, 115, 480
BsiHKCI	CYCGRG	2 cut(s)	135, 381
BsiSI	CCGG	4 cut(s)	59, 190, 485, 504
BslI	CCNNNNNNNGG	7 cut(s)	101, 269, 287, 343, 344, 382, 469
BsnI	GGCC	2 cut(s)	105, 253
BsoBI	CYCGRG	2 cut(s)	135, 381
Bsp1286I	GDGCHC	3 cut(s)	93, 115, 480
Bsp143I	GATC	1 cut(s)	292
Bsp19I	CCATGG	1 cut(s)	149
BspACI	CCGC	5 cut(s)	127, 156, 377, 400, 409
BspANI	GGCC	2 cut(s)	105, 253
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	3 cut(s)	147, 254, 502
BsrFI	RCCGGY	2 cut(s)	58, 189
BsrI	ACTGG	2 cut(s)	13, 233
BssAI	RCCGGY	2 cut(s)	58, 189
BssECI	CCNNGG	4 cut(s)	149, 298, 337, 380
BssMI	GATC	1 cut(s)	292
BssNI	GRCGYC	2 cut(s)	82, 435
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	3 cut(s)	299, 311, 339
Bst4CI	ACNGT	3 cut(s)	110, 317, 371
BstACI	GRCGYC	2 cut(s)	82, 435
BstC8I	GCNNGC	2 cut(s)	115, 183
BstDSI	CCRYGG	1 cut(s)	149
BstENI	CCTNNNNNAGG	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	227, 329
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 250, 408
BstNI	CCWGG	3 cut(s)	299, 311, 339
BstSCI	CCNGG	5 cut(s)	297, 309, 337, 484, 503
BstSLI	GKGCMC	1 cut(s)	115
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	105, 253
BtgI	CCRYGG	1 cut(s)	149
BtrI	CACGTC	1 cut(s)	101
BtsCI	GGATG	2 cut(s)	227, 329
BtsI	GCAGTG	1 cut(s)	455
BtsIMutI	CAGTG	1 cut(s)	455
Cac8I	GCNNGC	2 cut(s)	115, 183
CfoI	GCGC	1 cut(s)	181
Cfr10I	RCCGGY	2 cut(s)	58, 189
Cfr13I	GGNCC	4 cut(s)	153, 252, 313, 512
CseI	GACGC	3 cut(s)	90, 202, 219
Csp6I	GTAC	3 cut(s)	303, 350, 452
CviAII	CATG	1 cut(s)	150
CviJI	RGCY	7 cut(s)	62, 105, 193, 253, 274, 397, 478
CviKI_1	RGCY	7 cut(s)	62, 105, 193, 253, 274, 397, 478
CviQI	GTAC	3 cut(s)	303, 350, 452
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	103
EciI	GGCGGA	2 cut(s)	145, 389
Ecl136II	GAGCTC	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	480
Eco47I	GGWCC	3 cut(s)	153, 313, 512
Eco53kI	GAGCTC	1 cut(s)	478
Eco88I	CYCGRG	2 cut(s)	135, 381
EcoICRI	GAGCTC	1 cut(s)	478
EcoNI	CCTNNNNNAGG	1 cut(s)	267
EcoRII	CCWGG	3 cut(s)	297, 309, 337
EcoT14I	CCWWGG	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	1 cut(s)	153
FaiI	YATR	2 cut(s)	79, 151
FatI	CATG	1 cut(s)	149
FauI	CCCGC	2 cut(s)	384, 416
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	127, 194
FokI	GGATG	2 cut(s)	214, 336
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	2 cut(s)	127, 194
FspBI	CTAG	2 cut(s)	3, 264
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	2 cut(s)	127, 194
HaeII	RGCGCY	1 cut(s)	182
HaeIII	GGCC	2 cut(s)	105, 253
HapII	CCGG	4 cut(s)	59, 190, 485, 504
HgaI	GACGC	3 cut(s)	90, 202, 219
HhaI	GCGC	1 cut(s)	181
Hin1I	GRCGYC	2 cut(s)	82, 435
Hin1II	CATG	1 cut(s)	153
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	2 cut(s)	33, 45
HpaII	CCGG	4 cut(s)	59, 190, 485, 504
HphI	GGTGA	4 cut(s)	48, 326, 359, 365
Hpy166II	GTNNAC	3 cut(s)	113, 305, 433
Hpy188I	TCNGA	3 cut(s)	44, 70, 440
Hpy188III	TCNNGA	4 cut(s)	21, 173, 383, 491
Hpy8I	GTNNAC	3 cut(s)	113, 305, 433
Hpy99I	CGWCG	6 cut(s)	33, 213, 218, 252, 261, 437
HpyCH4III	ACNGT	3 cut(s)	110, 317, 371
HpyCH4IV	ACGT	2 cut(s)	100, 435
HpyCH4V	TGCA	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 250, 408
HpySE526I	ACGT	2 cut(s)	100, 435
Hsp92I	GRCGYC	2 cut(s)	82, 435
Hsp92II	CATG	1 cut(s)	153
HspAI	GCGC	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	292
LmnI	GCTCC	3 cut(s)	249, 402, 483
Lsp1109I	GCAGC	1 cut(s)	180
MaeI	CTAG	2 cut(s)	3, 264
MaeII	ACGT	2 cut(s)	100, 435
MaeIII	GTNAC	4 cut(s)	96, 276, 317, 371
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	2 cut(s)	28, 31
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	3 cut(s)	93, 115, 480
MlsI	TGGCCA	1 cut(s)	105
MluI	ACGCGT	1 cut(s)	211
MluNI	TGGCCA	1 cut(s)	105
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	7 cut(s)	132, 144, 263, 375, 390, 473, 525
Mox20I	TGGCCA	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	105
Msp20I	TGGCCA	1 cut(s)	105
MspI	CCGG	4 cut(s)	59, 190, 485, 504
MspR9I	CCNGG	5 cut(s)	299, 311, 339, 486, 505
MvaI	CCWGG	3 cut(s)	299, 311, 339
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	3 cut(s)	123, 250, 408
NciI	CCSGG	2 cut(s)	486, 505
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	1 cut(s)	153
NlaIV	GGNNCC	3 cut(s)	147, 254, 502
NmuCI	GTSAC	4 cut(s)	96, 276, 317, 371
PaeR7I	CTCGAG	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	3 cut(s)	106, 256, 313
PfeI	GAWTC	2 cut(s)	33, 45
PkrI	GCNGC	2 cut(s)	128, 195
Psp124BI	GAGCTC	1 cut(s)	480
Psp6I	CCWGG	3 cut(s)	297, 309, 337
PspGI	CCWGG	3 cut(s)	297, 309, 337
PspN4I	GGNNCC	3 cut(s)	147, 254, 502
PspPI	GGNCC	4 cut(s)	153, 252, 313, 512
PspXI	VCTCGAGB	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	3 cut(s)	304, 351, 453
RsaNI	GTAC	3 cut(s)	303, 350, 452
SacI	GAGCTC	1 cut(s)	480
SalI	GTCGAC	1 cut(s)	431
SatI	GCNGC	2 cut(s)	127, 194
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	4 cut(s)	153, 252, 313, 512
ScaI	AGTACT	1 cut(s)	351
ScrFI	CCNGG	5 cut(s)	299, 311, 339, 486, 505
SduI	GDGCHC	3 cut(s)	93, 115, 480
SetI	ASST	6 cut(s)	103, 136, 343, 399, 438, 480
Sfr274I	CTCGAG	1 cut(s)	135
SinI	GGWCC	3 cut(s)	153, 313, 512
SlaI	CTCGAG	1 cut(s)	135
SmlI	CTYRAG	3 cut(s)	19, 86, 135
SmoI	CTYRAG	3 cut(s)	19, 86, 135
SsiI	CCGC	5 cut(s)	127, 156, 377, 400, 409
SspMI	CTAG	2 cut(s)	3, 264
SstI	GAGCTC	1 cut(s)	480
StyD4I	CCNGG	5 cut(s)	297, 309, 337, 484, 503
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	3 cut(s)	110, 317, 371
TaiI	ACGT	2 cut(s)	103, 438
TaqI	TCGA	2 cut(s)	136, 432
TatI	WGTACW	1 cut(s)	349
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	2 cut(s)	33, 45
TscAI	CASTG	1 cut(s)	462
TseFI	GTSAC	4 cut(s)	96, 276, 317, 371
TseI	GCWGC	1 cut(s)	193
Tsp45I	GTSAC	4 cut(s)	96, 276, 317, 371
TspGWI	ACGGA	3 cut(s)	236, 336, 455
TspRI	CASTG	1 cut(s)	462
VneI	GTGCAC	1 cut(s)	111
VpaK11BI	GGWCC	3 cut(s)	153, 313, 512
XagI	CCTNNNNNAGG	1 cut(s)	267
XhoI	CTCGAG	1 cut(s)	135
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	2 cut(s)	3, 264
ZraI	GACGTC	1 cut(s)	436
ZrmI	AGTACT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.