Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005419

Physical Location & Seq

Genomic Coordinates Forward (+)

3339316 .. 3340821

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G046200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAGTGAAACGCACAGCTTCCAGATCCAGTCTCTAGACCTGGCAAACTTTCAACCATGTCTGCAGGAGGGAGAAGATGCAGAAGAAGCGCGAAACAAAAAGACCGTGACGGCTCTCTACAGAGCCTTGACCTCCAACGACGTTGATGTCGTCCACCTCCTCCTCGCACCCTATCTGGAGTGGTGGTTCCATGGCCCACCAACCCACCAGCATTTGAACCGCCTGCTCACCGGTGCGTCACCATACGACCCGTCATTCAAGTTCGTCCCTCTCTCCATCGTCGCGTTCGGGTCAATGGTGCTGGTTGAAGGATTCGACGATTGTCGTTCGGTGTCGTGGGTGCATGCATGGACCGTGACGGACGGGATAATTACCCAGGTCAGGGAATACTACAACACGTCCGTCACAGTCACCCGGTTATCGTCACCCGAAATTAGGTCACAGTCAGGCAATTGCCAGAGTGTGTGGCAAAGTAAGTTAGCGGATAATGGGTCTGTGCCTGGCCTCGTTTTGGCACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WI12

Protein Analysis

174

Amino Acids

19.3

Weight (kDa)

5.22

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10985
fragaria_vesca	FvH4_3g39920
malus_domestica	MD01G1160900.v1.1 MD03G1057800.v1.1 MD04G1079700.v1.1 MD07G1228900.v1.1 MD11G1060200.v1.1
prunus_persica	Prupe.2G258900_v2.0.a1 Prupe.6G046200_v2.0.a1
pyrus_communis	pycom07g20710
rosa_chinensis	RchiOBHm_Chr5g0071891
rosa_laevigata	RLG00000026965 RLG00000036261
rosa_multiflora	Rmu_sc0000809.1_g000024 Rmu_sc0002149.1_g000013 Rmu_sc0029638.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009270 Rroxscaffold_4G00285700
rosa_rugosa	Rorug01G0363800 Rorug05G0415500
rosa_samantha	Rh1AG373900 Rh1BG337300 Rh1CG350600 Rh1DG368300 Rh5BG491400 Rh5CG515300 Rh5DG502900
rosa_wichuraiana	Rw1G032890 Rw5G043820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AccII	CGCG	2 cut(s)	91, 284
AciI	CCGC	2 cut(s)	220, 482
AclWI	GGATC	1 cut(s)	19
AfiI	CCNNNNNNNGG	4 cut(s)	381, 382, 435, 511
AflIII	ACRYGT	1 cut(s)	396
AgeI	ACCGGT	1 cut(s)	230
AgsI	TTSAA	4 cut(s)	53, 217, 259, 308
AjiI	CACGTC	1 cut(s)	399
AjnI	CCWGG	3 cut(s)	39, 375, 499
AloI	GAACNNNNNNTCC	2 cut(s)	170, 202
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	2 cut(s)	193, 502
AsiGI	ACCGGT	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	2 cut(s)	194, 351
AsuC2I	CCSGG	1 cut(s)	415
AsuHPI	GGTGA	4 cut(s)	220, 231, 403, 417
AvaII	GGWCC	1 cut(s)	351
BccI	CCATC	1 cut(s)	284
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	3 cut(s)	41, 377, 501
BcnI	CCSGG	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	2 cut(s)	62, 118
Bme1390I	CCNGG	4 cut(s)	41, 377, 415, 501
Bme18I	GGWCC	1 cut(s)	351
BmgBI	CACGTC	1 cut(s)	399
BmgT120I	GGNCC	2 cut(s)	194, 351
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	4 cut(s)	41, 377, 415, 501
BmsI	GCATC	1 cut(s)	67
BoxI	GACNNNNGTC	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	415
BsaJI	CCNNGG	2 cut(s)	190, 375
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	4 cut(s)	381, 382, 435, 511
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	28
BseBI	CCWGG	3 cut(s)	41, 377, 501
BseDI	CCNNGG	2 cut(s)	190, 375
BseLI	CCNNNNNNNGG	4 cut(s)	381, 382, 435, 511
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	2 cut(s)	149, 152
Bsh1236I	CGCG	2 cut(s)	91, 284
BshFI	GGCC	2 cut(s)	195, 504
BshTI	ACCGGT	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	231, 415
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	4 cut(s)	381, 382, 435, 511
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	2 cut(s)	195, 504
Bsp143I	GATC	1 cut(s)	24
Bsp19I	CCATGG	1 cut(s)	190
BspACI	CCGC	2 cut(s)	220, 482
BspANI	GGCC	2 cut(s)	195, 504
BspFNI	CGCG	2 cut(s)	91, 284
BspLI	GGNNCC	1 cut(s)	188
BspMAI	CTGCAG	1 cut(s)	66
BspPI	GGATC	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	2 cut(s)	190, 375
BssMI	GATC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	3 cut(s)	41, 377, 501
Bst4CI	ACNGT	5 cut(s)	106, 355, 409, 444, 519
BstC8I	GCNNGC	2 cut(s)	224, 345
BstDSI	CCRYGG	1 cut(s)	190
BstFNI	CGCG	2 cut(s)	91, 284
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	3 cut(s)	41, 377, 501
BstNSI	RCATGY	1 cut(s)	347
BstPAI	GACNNNNGTC	1 cut(s)	321
BstSCI	CCNGG	4 cut(s)	39, 375, 413, 499
BstSFI	CTRYAG	2 cut(s)	62, 118
BstUI	CGCG	2 cut(s)	91, 284
BstX2I	RGATCY	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	195, 504
BtgI	CCRYGG	1 cut(s)	190
BtrI	CACGTC	1 cut(s)	399
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	224, 345
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	194, 351
CseI	GACGC	1 cut(s)	225
CspAI	ACCGGT	1 cut(s)	230
CviAII	CATG	4 cut(s)	57, 191, 344, 348
CviJI	RGCY	5 cut(s)	18, 113, 125, 195, 504
CviKI_1	RGCY	5 cut(s)	18, 113, 125, 195, 504
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	351
EcoRII	CCWGG	3 cut(s)	39, 375, 499
EcoT14I	CCWWGG	1 cut(s)	190
EcoT22I	ATGCAT	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	4 cut(s)	60, 194, 347, 351
FaiI	YATR	5 cut(s)	58, 192, 244, 345, 349
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	4 cut(s)	56, 190, 343, 347
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	90
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	2 cut(s)	195, 504
HapII	CCGG	2 cut(s)	231, 415
HgaI	GACGC	1 cut(s)	225
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	4 cut(s)	60, 194, 347, 351
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	1 cut(s)	312
HpaII	CCGG	2 cut(s)	231, 415
HphI	GGTGA	4 cut(s)	220, 231, 403, 417
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188III	TCNNGA	3 cut(s)	22, 35, 176
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	3 cut(s)	143, 284, 320
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	5 cut(s)	106, 355, 409, 444, 519
HpyCH4IV	ACGT	2 cut(s)	141, 398
HpyCH4V	TGCA	4 cut(s)	64, 80, 343, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpySE526I	ACGT	2 cut(s)	141, 398
Hsp92II	CATG	4 cut(s)	60, 194, 347, 351
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	24
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	2 cut(s)	141, 398
MaeIII	GTNAC	7 cut(s)	106, 237, 355, 403, 409, 423, 438
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	2 cut(s)	86, 95
MfeI	CAATTG	1 cut(s)	451
MflI	RGATCY	1 cut(s)	24
MluCI	AATT	3 cut(s)	369, 432, 451
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	7 cut(s)	61, 142, 167, 170, 173, 279, 515
Mph1103I	ATGCAT	1 cut(s)	349
MspI	CCGG	2 cut(s)	231, 415
MspR9I	CCNGG	4 cut(s)	41, 377, 415, 501
MunI	CAATTG	1 cut(s)	451
MvaI	CCWGG	3 cut(s)	41, 377, 501
MvnI	CGCG	2 cut(s)	91, 284
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	1 cut(s)	415
NcoI	CCATGG	1 cut(s)	190
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	4 cut(s)	60, 194, 347, 351
NlaIV	GGNNCC	1 cut(s)	188
NmuCI	GTSAC	7 cut(s)	106, 237, 355, 403, 409, 423, 438
NsiI	ATGCAT	1 cut(s)	349
NspI	RCATGY	1 cut(s)	347
PaeI	GCATGC	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	312
PinAI	ACCGGT	1 cut(s)	230
PshAI	GACNNNNGTC	1 cut(s)	321
Psp6I	CCWGG	3 cut(s)	39, 375, 499
PspGI	CCWGG	3 cut(s)	39, 375, 499
PspN4I	GGNNCC	1 cut(s)	188
PspPI	GGNCC	2 cut(s)	194, 351
PstI	CTGCAG	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	24
Sau96I	GGNCC	2 cut(s)	194, 351
ScrFI	CCNGG	4 cut(s)	41, 377, 415, 501
SetI	ASST	8 cut(s)	20, 42, 134, 144, 159, 381, 401, 440
SfaNI	GCATC	1 cut(s)	67
SfcI	CTRYAG	2 cut(s)	62, 118
SgrAI	CRCCGGYG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	351
SphI	GCATGC	1 cut(s)	347
Sse9I	AATT	3 cut(s)	369, 432, 451
SsiI	CCGC	2 cut(s)	220, 482
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	4 cut(s)	39, 375, 413, 499
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	5 cut(s)	106, 355, 409, 444, 519
TaiI	ACGT	2 cut(s)	144, 401
TaqI	TCGA	1 cut(s)	315
TasI	AATT	3 cut(s)	369, 432, 451
TfiI	GAWTC	1 cut(s)	312
TscAI	CASTG	1 cut(s)	522
TseFI	GTSAC	7 cut(s)	106, 237, 355, 403, 409, 423, 438
Tsp45I	GTSAC	7 cut(s)	106, 237, 355, 403, 409, 423, 438
TspGWI	ACGGA	2 cut(s)	374, 391
TspRI	CASTG	1 cut(s)	522
VpaK11BI	GGWCC	1 cut(s)	351
XbaI	TCTAGA	1 cut(s)	34
XceI	RCATGY	1 cut(s)	347
XspI	CTAG	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.