Rorug01G0363800

Wound-induced protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
47885636 .. 47886579
944 bp
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UTR
Exon/CDS
Intron
Rorug01G0363800.1

Sequence Viewer

Length: 273 bp
ATGAAGAGGAAACAAGTATCCCTTGTTTTTGCAATACTTCTGCTTATAGCTACTCTTCCAAGTCATTCCACTGCCTCTGTGGCTATAGATGCAGCGTCTGCAGAGCTTGATCTGGAAACTGCACCAGCAAGAAAGAGTTTGGTGGCCACAAAACACATGTTAGCTACTCGGCTCAATTCCAGGAAGCTGGTTGCCGTTAAGAATGTTCACAAAGTTCCATCAGGGCCAAACCCCATCGGAAATCAGCAGTTACCACCATTTACCCACTCATGA

Protein Analysis

90

Amino Acids

9.62

Weight (kDa)

10.69

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 144
AflIII ACRYGT 1 cut(s) 156
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 4 cut(s) 50, 106, 164, 187
AluI AGCT 4 cut(s) 50, 106, 164, 187
AlwNI CAGNNNCTG 1 cut(s) 98
AoxI GGCC 2 cut(s) 144, 224
ApeKI GCWGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 224
BalI TGGCCA 1 cut(s) 146
BbvI GCAGC 1 cut(s) 104
BccI CCATC 2 cut(s) 226, 242
BceAI ACGGC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 181
BciVI GTATCC 1 cut(s) 28
BfmI CTRYAG 2 cut(s) 84, 99
BfuI GTATCC 1 cut(s) 28
BglI GCCNNNNNGGC 1 cut(s) 80
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 224
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 79
BseBI CCWGG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 104
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 2 cut(s) 146, 226
BsnI GGCC 2 cut(s) 146, 226
Bsp143I GATC 1 cut(s) 109
BspANI GGCC 2 cut(s) 146, 226
BspHI TCATGA 1 cut(s) 269
BspMAI CTGCAG 1 cut(s) 103
BssMI GATC 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 60
BstAPI GCANNNNNTGC 1 cut(s) 98
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 3 cut(s) 80, 89, 98
BstNI CCWGG 1 cut(s) 181
BstNSI RCATGY 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 179
BstSFI CTRYAG 2 cut(s) 84, 99
BstV1I GCAGC 1 cut(s) 104
BstXI CCANNNNNNTGG 1 cut(s) 187
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 2 cut(s) 146, 226
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
CaiI CAGNNNCTG 1 cut(s) 98
CciI TCATGA 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 224
CseI GACGC 1 cut(s) 84
CviAII CATG 2 cut(s) 157, 270
CviJI RGCY 8 cut(s) 50, 83, 106, 146, 164, 172, 187, 226
CviKI_1 RGCY 8 cut(s) 50, 83, 106, 146, 164, 172, 187, 226
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 144
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 179
FaeI CATG 2 cut(s) 160, 273
FaiI YATR 4 cut(s) 47, 86, 158, 271
FalI AAGNNNNNCTT 1 cut(s) 38
FatI CATG 2 cut(s) 156, 269
Fnu4HI GCNGC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 93
HaeIII GGCC 2 cut(s) 146, 226
HgaI GACGC 1 cut(s) 84
Hin1II CATG 2 cut(s) 160, 273
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 1 cut(s) 239
Hpy188III TCNNGA 2 cut(s) 113, 270
Hpy8I GTNNAC 1 cut(s) 208
HpyCH4V TGCA 4 cut(s) 32, 92, 101, 122
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 89, 98
Hsp92II CATG 2 cut(s) 160, 273
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 6 cut(s) 98, 138, 166, 173, 193, 207
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 249
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 2 cut(s) 16, 47
MlsI TGGCCA 1 cut(s) 146
MluCI AATT 1 cut(s) 175
MluNI TGGCCA 1 cut(s) 146
MnlI CCTC 1 cut(s) 85
Mox20I TGGCCA 1 cut(s) 146
MscI TGGCCA 1 cut(s) 146
MseI TTAA 1 cut(s) 198
Msp20I TGGCCA 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 181
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 3 cut(s) 80, 89, 98
NdeII GATC 1 cut(s) 109
NlaIII CATG 2 cut(s) 160, 273
NmeAIII GCCGAG 1 cut(s) 148
NspI RCATGY 1 cut(s) 160
PagI TCATGA 1 cut(s) 269
PciI ACATGT 1 cut(s) 156
PfoI TCCNGGA 1 cut(s) 179
PkrI GCNGC 1 cut(s) 94
PscI ACATGT 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PspPI GGNCC 1 cut(s) 224
PstI CTGCAG 1 cut(s) 103
PstNI CAGNNNCTG 1 cut(s) 98
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 181
SetI ASST 4 cut(s) 52, 108, 166, 189
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 2 cut(s) 84, 99
Sse9I AATT 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 179
TasI AATT 1 cut(s) 175
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 1 cut(s) 76
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 76
XceI RCATGY 1 cut(s) 160
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.