Rorug05G0415500

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0005419
Physical Location & Seq
Forward (+)
57543991 .. 57545011
1021 bp
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UTR
Exon/CDS
Intron
Rorug05G0415500.1

Sequence Viewer

Length: 342 bp
ATGCCGTCCCATTGGTGTAAAGGAATCTGGTCATCAGATCTGAGGAAGAATGTGCATCTGGTGTTGAAGAAGTGTGAGAGCCCATCACCACGGTCACCTCCTCGGACTCGACCTTGGCCGCAATGGTCGTCGCCCATTTCCTCATCTCCGCCTGTGCAGTTCAACATCGCCAACCTCACCACCGGTTGCCAGAAGAAGTTGGAGATCGATGACGACCATAAACTGAGTGCCTTTTCTGACAAGAGGAACTCACAGGAATTGAGTGGAGATGCCTTTGGAGAGGAATTTAAGGGATATGTCTTTAAGATTATGGGAGGCTGTGTGACAAGCGAGGGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

113

Amino Acids

12.62

Weight (kDa)

8.75

Isoelectric Point (pI)

64.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6e PF01092 53 - 107 1.2e-13 Ribosomal protein S6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 119, 149
AcoI YGGCCR 1 cut(s) 116
AcsI RAATTY 1 cut(s) 284
AgeI ACCGGT 1 cut(s) 182
AgsI TTSAA 2 cut(s) 67, 163
AoxI GGCC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 284
AsiGI ACCGGT 1 cut(s) 182
AsuHPI GGTGA 3 cut(s) 78, 87, 169
BanII GRGCYC 1 cut(s) 83
BccI CCATC 1 cut(s) 91
BglII AGATCT 1 cut(s) 37
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
BmsI GCATC 2 cut(s) 64, 259
Bsa29I ATCGAT 1 cut(s) 207
BsaJI CCNNGG 3 cut(s) 89, 101, 113
BsaWI WCCGGW 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bse118I RCCGGY 1 cut(s) 182
Bse3DI GCAATG 1 cut(s) 128
BseCI ATCGAT 1 cut(s) 207
BseDI CCNNGG 3 cut(s) 89, 101, 113
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 2 cut(s) 32, 215
BseRI GAGGAG 1 cut(s) 90
BsgI GTGCAG 1 cut(s) 176
BshFI GGCC 1 cut(s) 118
BshTI ACCGGT 1 cut(s) 182
BshVI ATCGAT 1 cut(s) 207
BsiSI CCGG 1 cut(s) 183
BsnI GGCC 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 2 cut(s) 37, 204
BspACI CCGC 2 cut(s) 119, 149
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 2 cut(s) 33, 216
BspDI ATCGAT 1 cut(s) 207
BspHI TCATGA 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 3 cut(s) 89, 101, 113
BssMI GATC 2 cut(s) 37, 204
BssT1I CCWWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 41, 224
BstDSI CCRYGG 1 cut(s) 89
BstEII GGTNACC 1 cut(s) 93
BstKTI GATC 2 cut(s) 40, 207
BstMBI GATC 2 cut(s) 37, 204
BstPI GGTNACC 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
Bsu15I ATCGAT 1 cut(s) 207
BsuRI GGCC 1 cut(s) 118
BsuTUI ATCGAT 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 89
BtgZI GCGATG 1 cut(s) 151
CciI TCATGA 1 cut(s) 338
Cfr10I RCCGGY 1 cut(s) 182
ClaI ATCGAT 1 cut(s) 207
CspAI ACCGGT 1 cut(s) 182
CviAII CATG 1 cut(s) 339
CviJI RGCY 3 cut(s) 81, 118, 318
CviKI_1 RGCY 3 cut(s) 81, 118, 318
DdeI CTNAG 2 cut(s) 41, 224
DpnI GATC 2 cut(s) 39, 206
DpnII GATC 2 cut(s) 37, 204
EaeI YGGCCR 1 cut(s) 116
EciI GGCGGA 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 83
Eco91I GGTNACC 1 cut(s) 93
EcoO65I GGTNACC 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 1 cut(s) 342
FaiI YATR 4 cut(s) 219, 297, 311, 340
FatI CATG 1 cut(s) 338
Fnu4HI GCNGC 1 cut(s) 119
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 119
GluI GCNGC 1 cut(s) 119
HaeIII GGCC 1 cut(s) 118
HapII CCGG 1 cut(s) 183
Hin1II CATG 1 cut(s) 342
HinfI GANTC 2 cut(s) 24, 106
HpaII CCGG 1 cut(s) 183
HphI GGTGA 3 cut(s) 78, 87, 169
Hpy188I TCNGA 4 cut(s) 37, 42, 105, 238
Hpy188III TCNNGA 1 cut(s) 339
Hpy99I CGWCG 1 cut(s) 133
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 55, 157
HpyF3I CTNAG 2 cut(s) 41, 224
Hsp92II CATG 1 cut(s) 342
Kzo9I GATC 2 cut(s) 37, 204
LpnPI CCDG 6 cut(s) 13, 44, 165, 196, 203, 239
LweI GCATC 2 cut(s) 64, 259
MaeIII GTNAC 2 cut(s) 93, 322
MalI GATC 2 cut(s) 39, 206
MboI GATC 2 cut(s) 37, 204
MboII GAAGA 3 cut(s) 58, 79, 205
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 2 cut(s) 257, 284
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 9 cut(s) 36, 108, 111, 151, 185, 237, 274, 308, 325
MseI TTAA 2 cut(s) 288, 303
MspI CCGG 1 cut(s) 183
NdeII GATC 2 cut(s) 37, 204
NlaIII CATG 1 cut(s) 342
NmuCI GTSAC 2 cut(s) 93, 322
PagI TCATGA 1 cut(s) 338
PfeI GAWTC 1 cut(s) 24
PinAI ACCGGT 1 cut(s) 182
PkrI GCNGC 1 cut(s) 120
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PspEI GGTNACC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 37
SaqAI TTAA 2 cut(s) 288, 303
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 2 cut(s) 37, 204
SchI GAGTC 1 cut(s) 100
SduI GDGCHC 1 cut(s) 83
SetI ASST 3 cut(s) 100, 115, 177
SfaNI GCATC 2 cut(s) 64, 259
Sse9I AATT 2 cut(s) 257, 284
SsiI CCGC 2 cut(s) 119, 149
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 93
TaqI TCGA 2 cut(s) 109, 207
TasI AATT 2 cut(s) 257, 284
TauI GCSGC 1 cut(s) 121
TfiI GAWTC 1 cut(s) 24
Tru1I TTAA 2 cut(s) 288, 303
Tru9I TTAA 2 cut(s) 288, 303
TseFI GTSAC 2 cut(s) 93, 322
Tsp45I GTSAC 2 cut(s) 93, 322
TspDTI ATGAA 1 cut(s) 327
XapI RAATTY 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.