Rmu_sc0002149.1_g000013

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002149.1
OG0005419
Physical Location & Seq
Reverse (-)
64595 .. 65083
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002149.1_g000013.1.cds

Sequence Viewer

Length: 489 bp
ctggctaaccctcgagaatgtggcctggagggagaaacgaaaggagacttggagtctcgcaacaagcgagccgtgacggctctgtacgacgccttcaactccaaagacgttgatgttgttcacctcctcctcgcgccctacctagagtggtggttccatggcccccctactcatcagcatttgaaccgcctcctcaccggtgcgccgccgtacgactcgtcgttcatattccttcctctgtcgattgttgcattcggatcaatggtggtggctgagggatacgaggaaggtcattcggtgtcgtgggtgcacgcgtggaccgtcacagatgggataattacccaagtgagggagtactacaacacgtccgtcacggttacgaggttaatctcaccggaaactacatcacggtcaggtagttgccagagtgtttgggagagtaagctctctgataataagtctgtacctggcctcgtattggccctatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

162

Amino Acids

17.95

Weight (kDa)

5.43

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 134, 314
AciI CCGC 2 cut(s) 187, 206
AclWI GGATC 1 cut(s) 265
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 4 cut(s) 86, 212, 356, 465
AfiI CCNNNNNNNGG 3 cut(s) 348, 349, 478
AflIII ACRYGT 2 cut(s) 312, 363
AgeI ACCGGT 1 cut(s) 197
AgsI TTSAA 2 cut(s) 97, 184
AhdI GACNNNNNGTC 1 cut(s) 52
AjiI CACGTC 1 cut(s) 366
AjnI CCWGG 2 cut(s) 24, 466
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 1 cut(s) 445
AluI AGCT 1 cut(s) 445
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 2 cut(s) 39, 60
Alw44I GTGCAC 1 cut(s) 308
AlwI GGATC 1 cut(s) 265
Ama87I CYCGRG 1 cut(s) 12
AoxI GGCC 4 cut(s) 22, 160, 469, 480
ApaLI GTGCAC 1 cut(s) 308
AsiGI ACCGGT 1 cut(s) 197
AspLEI GCGC 2 cut(s) 136, 205
AspS9I GGNCC 3 cut(s) 161, 318, 481
AsuHPI GGTGA 3 cut(s) 113, 187, 384
AvaI CYCGRG 1 cut(s) 12
AvaII GGWCC 1 cut(s) 318
BaeGI GKGCMC 1 cut(s) 312
BarI GAAGNNNNNNTAC 2 cut(s) 77, 109
Bbv12I GWGCWC 1 cut(s) 312
BbvCI CCTCAGC 1 cut(s) 273
BccI CCATC 1 cut(s) 323
BceAI ACGGC 3 cut(s) 56, 93, 193
BciT130I CCWGG 2 cut(s) 26, 468
BciVI GTATCC 1 cut(s) 272
BcoDI GTCTC 2 cut(s) 39, 60
BfaI CTAG 1 cut(s) 143
BfmI CTRYAG 1 cut(s) 485
BfuI GTATCC 1 cut(s) 272
BglI GCCNNNNNGGC 1 cut(s) 77
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 2 cut(s) 26, 468
Bme18I GGWCC 1 cut(s) 318
BmeRI GACNNNNNGTC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 12
BmgBI CACGTC 1 cut(s) 366
BmgT120I GGNCC 3 cut(s) 161, 318, 481
BmiI GGNNCC 2 cut(s) 155, 163
BmrFI CCNGG 2 cut(s) 26, 468
BpmI CTGGAG 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 157
BsaWI WCCGGW 2 cut(s) 197, 394
Bsc4I CCNNNNNNNGG 3 cut(s) 348, 349, 478
Bse118I RCCGGY 1 cut(s) 197
BseBI CCWGG 2 cut(s) 26, 468
BseDI CCNNGG 1 cut(s) 157
BseLI CCNNNNNNNGG 3 cut(s) 348, 349, 478
BseMII CTCAG 1 cut(s) 264
BseRI GAGGAG 3 cut(s) 116, 119, 182
BseSI GKGCMC 1 cut(s) 312
Bsh1236I CGCG 2 cut(s) 134, 314
BshFI GGCC 4 cut(s) 24, 162, 471, 482
BshTI ACCGGT 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 12
BsiSI CCGG 2 cut(s) 198, 395
BsiWI CGTACG 1 cut(s) 210
BslI CCNNNNNNNGG 3 cut(s) 348, 349, 478
BsmAI GTCTC 2 cut(s) 39, 60
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 4 cut(s) 24, 162, 471, 482
BsoBI CYCGRG 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 1 cut(s) 257
Bsp19I CCATGG 1 cut(s) 157
BspACI CCGC 2 cut(s) 187, 206
BspANI GGCC 4 cut(s) 24, 162, 471, 482
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 2 cut(s) 134, 314
BspLI GGNNCC 2 cut(s) 155, 163
BspPI GGATC 1 cut(s) 265
BsrFI RCCGGY 1 cut(s) 197
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 257
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 2 cut(s) 26, 468
Bst4CI ACNGT 3 cut(s) 322, 376, 411
BstACI GRCGYC 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 69, 312
BstDEI CTNAG 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 157
BstFNI CGCG 2 cut(s) 134, 314
BstHHI GCGC 2 cut(s) 136, 205
BstKTI GATC 1 cut(s) 260
BstMAI GTCTC 2 cut(s) 39, 60
BstMBI GATC 1 cut(s) 257
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 2 cut(s) 26, 468
BstSCI CCNGG 2 cut(s) 24, 466
BstSFI CTRYAG 1 cut(s) 485
BstSLI GKGCMC 1 cut(s) 312
BstUI CGCG 2 cut(s) 134, 314
BsuI GTATCC 1 cut(s) 272
BsuRI GGCC 4 cut(s) 24, 162, 471, 482
BtgI CCRYGG 1 cut(s) 157
BtrI CACGTC 1 cut(s) 366
Cac8I GCNNGC 2 cut(s) 69, 312
CfoI GCGC 2 cut(s) 136, 205
Cfr10I RCCGGY 1 cut(s) 197
Cfr13I GGNCC 3 cut(s) 161, 318, 481
CseI GACGC 1 cut(s) 98
Csp6I GTAC 4 cut(s) 85, 211, 355, 464
CspAI ACCGGT 1 cut(s) 197
CspCI CAANNNNNGTGG 2 cut(s) 249, 284
CviAII CATG 1 cut(s) 158
CviJI RGCY 9 cut(s) 5, 24, 71, 80, 162, 272, 445, 471, 482
CviKI_1 RGCY 9 cut(s) 5, 24, 71, 80, 162, 272, 445, 471, 482
CviQI GTAC 4 cut(s) 85, 211, 355, 464
DdeI CTNAG 1 cut(s) 273
DpnI GATC 1 cut(s) 259
DpnII GATC 1 cut(s) 257
DriI GACNNNNNGTC 1 cut(s) 52
Eam1105I GACNNNNNGTC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 318
Eco88I CYCGRG 1 cut(s) 12
EcoRII CCWGG 2 cut(s) 24, 466
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 1 cut(s) 161
FaiI YATR 3 cut(s) 159, 227, 487
FatI CATG 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 206
FspBI CTAG 1 cut(s) 143
GlaI GCGC 2 cut(s) 135, 204
GluI GCNGC 1 cut(s) 206
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 4 cut(s) 24, 162, 471, 482
HapII CCGG 2 cut(s) 198, 395
HgaI GACGC 1 cut(s) 98
HhaI GCGC 2 cut(s) 136, 205
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 1 cut(s) 161
Hin6I GCGC 2 cut(s) 134, 203
HinP1I GCGC 2 cut(s) 134, 203
HinfI GANTC 2 cut(s) 53, 215
HpaII CCGG 2 cut(s) 198, 395
HphI GGTGA 3 cut(s) 113, 187, 384
Hpy166II GTNNAC 3 cut(s) 121, 310, 318
Hpy188I TCNGA 2 cut(s) 257, 451
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 3 cut(s) 121, 310, 318
Hpy99I CGWCG 2 cut(s) 92, 223
HpyAV CCTTC 3 cut(s) 103, 242, 281
HpyCH4III ACNGT 3 cut(s) 322, 376, 411
HpyCH4IV ACGT 2 cut(s) 108, 365
HpyCH4V TGCA 2 cut(s) 251, 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 2 cut(s) 108, 365
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 1 cut(s) 161
HspAI GCGC 2 cut(s) 134, 203
Kzo9I GATC 1 cut(s) 257
LpnPI CCDG 8 cut(s) 11, 38, 211, 399, 408, 437, 453, 480
MaeI CTAG 1 cut(s) 143
MaeII ACGT 2 cut(s) 108, 365
MaeIII GTNAC 4 cut(s) 73, 322, 370, 376
MalI GATC 1 cut(s) 259
MboI GATC 1 cut(s) 257
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 1 cut(s) 336
MluI ACGCGT 1 cut(s) 312
MlyI GAGTC 2 cut(s) 62, 209
MseI TTAA 1 cut(s) 386
MspI CCGG 2 cut(s) 198, 395
MspR9I CCNGG 2 cut(s) 26, 468
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 2 cut(s) 26, 468
MvnI CGCG 2 cut(s) 134, 314
MwoI GCNNNNNNNGC 1 cut(s) 77
NcoI CCATGG 1 cut(s) 157
NdeII GATC 1 cut(s) 257
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 2 cut(s) 155, 163
NmuCI GTSAC 3 cut(s) 73, 322, 370
PaeR7I CTCGAG 1 cut(s) 12
PcsI WCGNNNNNNNCGW 2 cut(s) 64, 318
PctI GAATGC 1 cut(s) 251
Pfl23II CGTACG 1 cut(s) 210
PinAI ACCGGT 1 cut(s) 197
PkrI GCNGC 1 cut(s) 207
PleI GAGTC 2 cut(s) 61, 209
PpsI GAGTC 2 cut(s) 61, 209
Psp6I CCWGG 2 cut(s) 24, 466
PspGI CCWGG 2 cut(s) 24, 466
PspLI CGTACG 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 155, 163
PspPI GGNCC 3 cut(s) 161, 318, 481
RsaI GTAC 4 cut(s) 86, 212, 356, 465
RsaNI GTAC 4 cut(s) 85, 211, 355, 464
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 1 cut(s) 257
Sau96I GGNCC 3 cut(s) 161, 318, 481
ScaI AGTACT 1 cut(s) 356
SchI GAGTC 2 cut(s) 62, 209
ScrFI CCNGG 2 cut(s) 26, 468
SduI GDGCHC 1 cut(s) 312
SetI ASST 9 cut(s) 111, 126, 144, 292, 368, 386, 418, 447, 469
SfcI CTRYAG 1 cut(s) 485
Sfr274I CTCGAG 1 cut(s) 12
SgrAI CRCCGGYG 1 cut(s) 197
SinI GGWCC 1 cut(s) 318
SlaI CTCGAG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
Sse9I AATT 1 cut(s) 336
SsiI CCGC 2 cut(s) 187, 206
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 2 cut(s) 24, 466
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 3 cut(s) 322, 376, 411
TaiI ACGT 2 cut(s) 111, 368
TaqI TCGA 2 cut(s) 13, 242
TasI AATT 1 cut(s) 336
TatI WGTACW 1 cut(s) 354
TauI GCSGC 1 cut(s) 208
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TseFI GTSAC 3 cut(s) 73, 322, 370
Tsp45I GTSAC 3 cut(s) 73, 322, 370
TspDTI ATGAA 1 cut(s) 214
TspGWI ACGGA 1 cut(s) 358
VneI GTGCAC 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 318
XhoI CTCGAG 1 cut(s) 12
XspI CTAG 1 cut(s) 143
ZrmI AGTACT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.