Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005419

Physical Location & Seq

Genomic Coordinates Reverse (-)

22702575 .. 22703314

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCAGGGAATCCTAACCCCCCGGCACCACCACCATCCACCTTTCACATTTCCTCCCAAATTCCCCTCTCTTTCTAAACCTCCGCCTTCTCTCTGTACTTTCTCTCTCCAAACCCGTGAATTTCTCGCTCTAAACCCGCCACAGAGGCTTAGGCAAGAACTGGCTAACTCTCAGGAAGCTCTGGAAGACACTGATTCCAGCAATCGAAGGGTGGTGTTCGCCCTTTATGATGCCCTAAGCTCCCACGACGTGGACACGGTTCACCAGATCGTCGCCCCCGACCTCGAGTGGTGGTTCCATGGTCCGCCGACCCACCAGTTCTTGATGCGCATCCTCACCGGCTCCCAAAAAGAACCCTTTCAGTTCGTCCCCCAGTCCATCGCCTCCTTCGGCCCCACCGTCCTCGTCGAGGGCTGCGACCGCGACTGCTCCATTTCCTGGGTCCACGCCTGGACTGTCGCCAATGGGGTAATCACCGGGGTCCGCGAGTACTTCAACACTTCCCTCACCGTCACGCGCCTCGGAAACCACACCCAGAACAACTCTCCCGCCGCCTCCGCTAAATCCTCGCCGTCCGGGTTTTCCTCCAAGTCGTCGTCGTCGTCGACATCCGAGATTACCTCGTTCCACTGCCCGTCCGTTTGGGAGAGCAGCGTCTCGGTCGGAAAGTCCGTGCCGGGTCTGGTCCTCGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0002238 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009624 GO:0010033 GO:0010035 GO:0010150 GO:0010193 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0090693 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WI12

Protein Analysis

233

Amino Acids

25.49

Weight (kDa)

6.58

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WI12	PF07107	109 - 232	9.6e-36	Wound-induced protein WI12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10985
fragaria_vesca	FvH4_3g39920
malus_domestica	MD01G1160900.v1.1 MD03G1057800.v1.1 MD04G1079700.v1.1 MD07G1228900.v1.1 MD11G1060200.v1.1
prunus_persica	Prupe.2G258900_v2.0.a1 Prupe.6G046200_v2.0.a1
pyrus_communis	pycom07g20710
rosa_chinensis	RchiOBHm_Chr5g0071891
rosa_laevigata	RLG00000026965 RLG00000036261
rosa_multiflora	Rmu_sc0000809.1_g000024 Rmu_sc0002149.1_g000013 Rmu_sc0029638.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009270 Rroxscaffold_4G00285700
rosa_rugosa	Rorug01G0363800 Rorug05G0415500
rosa_samantha	Rh1AG373900 Rh1BG337300 Rh1CG350600 Rh1DG368300 Rh5BG491400 Rh5CG515300 Rh5DG502900
rosa_wichuraiana	Rw1G032890 Rw5G043820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	24
AccB7I	CCANNNNNTGG	2 cut(s)	250, 438
AccI	GTMKAC	1 cut(s)	605
AccII	CGCG	3 cut(s)	423, 486, 517
AciI	CCGC	8 cut(s)	83, 137, 305, 421, 484, 549, 552, 558
AcsI	RAATTY	2 cut(s)	59, 119
AdeI	CACNNNGTG	1 cut(s)	250
AfaI	GTAC	2 cut(s)	97, 491
AfiI	CCNNNNNNNGG	3 cut(s)	250, 409, 438
AgsI	TTSAA	1 cut(s)	496
AjiI	CACGTC	1 cut(s)	250
AjnI	CCWGG	2 cut(s)	437, 449
AluBI	AGCT	2 cut(s)	179, 240
AluI	AGCT	2 cut(s)	179, 240
Alw26I	GTCTC	1 cut(s)	661
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	2 cut(s)	414, 651
ApoI	RAATTY	2 cut(s)	59, 119
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	2 cut(s)	330, 519
AspS9I	GGNCC	5 cut(s)	302, 392, 442, 481, 685
AsuC2I	CCSGG	4 cut(s)	22, 478, 577, 678
AsuHPI	GGTGA	4 cut(s)	254, 328, 466, 499
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	4 cut(s)	302, 442, 481, 685
BanI	GGYRCC	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	401, 663
BccI	CCATC	2 cut(s)	42, 386
BceAI	ACGGC	1 cut(s)	556
BciT130I	CCWGG	2 cut(s)	439, 451
BcnI	CCSGG	4 cut(s)	22, 478, 577, 678
BcoDI	GTCTC	1 cut(s)	661
BglI	GCCNNNNNGGC	1 cut(s)	145
BisI	GCNGC	3 cut(s)	415, 552, 652
BlsI	GCNGC	3 cut(s)	416, 553, 653
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	6 cut(s)	22, 439, 451, 478, 577, 678
Bme18I	GGWCC	4 cut(s)	302, 442, 481, 685
BmeT110I	CYCGRG	1 cut(s)	284
BmgBI	CACGTC	1 cut(s)	250
BmgT120I	GGNCC	5 cut(s)	302, 392, 442, 481, 685
BmiI	GGNNCC	6 cut(s)	26, 296, 343, 394, 443, 482
BmrFI	CCNGG	6 cut(s)	22, 439, 451, 478, 577, 678
BmrI	ACTGGG	1 cut(s)	367
BmsI	GCATC	3 cut(s)	220, 315, 339
BmuI	ACTGGG	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	192
BplI	GAGNNNNNCTC	2 cut(s)	605, 637
Bpu10I	CCTNAGC	2 cut(s)	149, 236
BpuMI	CCSGG	4 cut(s)	22, 478, 577, 678
BsaBI	GATNNNNATC	1 cut(s)	329
BsaJI	CCNNGG	5 cut(s)	20, 298, 438, 477, 520
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 409, 438
Bse118I	RCCGGY	1 cut(s)	338
Bse1I	ACTGG	3 cut(s)	165, 316, 373
Bse8I	GATNNNNATC	1 cut(s)	329
BseBI	CCWGG	2 cut(s)	439, 451
BseDI	CCNNGG	5 cut(s)	20, 298, 438, 477, 520
BseGI	GGATG	3 cut(s)	34, 330, 608
BseJI	GATNNNNATC	1 cut(s)	329
BseLI	CCNNNNNNNGG	3 cut(s)	250, 409, 438
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	3 cut(s)	165, 316, 373
BseXI	GCAGC	2 cut(s)	401, 663
Bsh1236I	CGCG	3 cut(s)	423, 486, 517
Bsh1285I	CGRYCG	2 cut(s)	421, 663
BshFI	GGCC	1 cut(s)	393
BshNI	GGYRCC	1 cut(s)	24
BsiEI	CGRYCG	2 cut(s)	421, 663
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	5 cut(s)	22, 339, 477, 576, 677
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	3 cut(s)	250, 409, 438
BsmAI	GTCTC	1 cut(s)	661
BsmBI	CGTCTC	1 cut(s)	661
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	393
BsoBI	CYCGRG	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	267
Bsp19I	CCATGG	1 cut(s)	298
BspACI	CCGC	8 cut(s)	83, 137, 305, 421, 484, 549, 552, 558
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	3 cut(s)	423, 486, 517
BspLI	GGNNCC	6 cut(s)	26, 296, 343, 394, 443, 482
BspT107I	GGYRCC	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	338
BsrI	ACTGG	3 cut(s)	165, 316, 373
BssAI	RCCGGY	1 cut(s)	338
BssECI	CCNNGG	5 cut(s)	20, 298, 438, 477, 520
BssMI	GATC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	2 cut(s)	439, 451
Bst4CI	ACNGT	4 cut(s)	259, 400, 457, 511
BstDEI	CTNAG	3 cut(s)	149, 171, 236
BstDSI	CCRYGG	1 cut(s)	298
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstF5I	GGATG	3 cut(s)	34, 330, 608
BstFNI	CGCG	3 cut(s)	423, 486, 517
BstHHI	GCGC	2 cut(s)	330, 519
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	1 cut(s)	661
BstMBI	GATC	1 cut(s)	267
BstMCI	CGRYCG	2 cut(s)	421, 663
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 420, 557
BstNI	CCWGG	2 cut(s)	439, 451
BstSCI	CCNGG	6 cut(s)	20, 437, 449, 476, 575, 676
BstUI	CGCG	3 cut(s)	423, 486, 517
BstV1I	GCAGC	2 cut(s)	401, 663
BstV2I	GAAGAC	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	393
BtgI	CCRYGG	1 cut(s)	298
BtgZI	GCGATG	1 cut(s)	364
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	3 cut(s)	34, 330, 608
BtsI	GCAGTG	1 cut(s)	628
BtsIMutI	CAGTG	2 cut(s)	189, 628
CfoI	GCGC	2 cut(s)	330, 519
Cfr10I	RCCGGY	1 cut(s)	338
Cfr13I	GGNCC	5 cut(s)	302, 392, 442, 481, 685
CseI	GACGC	1 cut(s)	643
Csp6I	GTAC	2 cut(s)	96, 490
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	7 cut(s)	148, 164, 179, 240, 342, 393, 414
CviKI_1	RGCY	7 cut(s)	148, 164, 179, 240, 342, 393, 414
CviQI	GTAC	2 cut(s)	96, 490
DdeI	CTNAG	3 cut(s)	149, 171, 236
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
DraIII	CACNNNGTG	1 cut(s)	250
EciI	GGCGGA	2 cut(s)	72, 294
Eco130I	CCWWGG	1 cut(s)	298
Eco47I	GGWCC	4 cut(s)	302, 442, 481, 685
Eco88I	CYCGRG	1 cut(s)	284
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoRII	CCWGG	2 cut(s)	437, 449
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
Esp3I	CGTCTC	1 cut(s)	661
FaeI	CATG	1 cut(s)	302
FaiI	YATR	2 cut(s)	228, 300
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	1 cut(s)	298
FauI	CCCGC	2 cut(s)	144, 556
FblI	GTMKAC	1 cut(s)	605
Fnu4HI	GCNGC	3 cut(s)	415, 552, 652
FokI	GGATG	3 cut(s)	21, 317, 595
Fsp4HI	GCNGC	3 cut(s)	415, 552, 652
FspAI	RTGCGCAY	1 cut(s)	329
FspI	TGCGCA	1 cut(s)	329
GlaI	GCGC	2 cut(s)	329, 518
GluI	GCNGC	3 cut(s)	415, 552, 652
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	5 cut(s)	22, 339, 477, 576, 677
HgaI	GACGC	1 cut(s)	643
HhaI	GCGC	2 cut(s)	330, 519
Hin1II	CATG	1 cut(s)	302
Hin6I	GCGC	2 cut(s)	328, 517
HinP1I	GCGC	2 cut(s)	328, 517
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HinfI	GANTC	2 cut(s)	9, 194
HpaII	CCGG	5 cut(s)	22, 339, 477, 576, 677
HphI	GGTGA	4 cut(s)	254, 328, 466, 499
Hpy166II	GTNNAC	4 cut(s)	253, 262, 445, 606
Hpy188I	TCNGA	3 cut(s)	524, 613, 665
Hpy188III	TCNNGA	3 cut(s)	173, 182, 322
Hpy8I	GTNNAC	4 cut(s)	253, 262, 445, 606
Hpy99I	CGWCG	7 cut(s)	251, 275, 410, 598, 601, 604, 607
HpyAV	CCTTC	3 cut(s)	96, 201, 397
HpyCH4III	ACNGT	4 cut(s)	259, 400, 457, 511
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 420, 557
HpyF3I	CTNAG	3 cut(s)	149, 171, 236
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	302
HspAI	GCGC	2 cut(s)	328, 517
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	3 cut(s)	245, 347, 434
Lsp1109I	GCAGC	2 cut(s)	401, 663
LweI	GCATC	3 cut(s)	220, 315, 339
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MboII	GAAGA	1 cut(s)	197
MluCI	AATT	2 cut(s)	59, 119
MmeI	TCCRAC	1 cut(s)	643
MroXI	GAANNNNTTC	1 cut(s)	357
MspI	CCGG	5 cut(s)	22, 339, 477, 576, 677
MspR9I	CCNGG	6 cut(s)	22, 439, 451, 478, 577, 678
MvaI	CCWGG	2 cut(s)	439, 451
MvnI	CGCG	3 cut(s)	423, 486, 517
MwoI	GCNNNNNNNGC	3 cut(s)	145, 420, 557
NciI	CCSGG	4 cut(s)	22, 478, 577, 678
NcoI	CCATGG	1 cut(s)	298
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	6 cut(s)	26, 296, 343, 394, 443, 482
NmuCI	GTSAC	1 cut(s)	511
NsbI	TGCGCA	1 cut(s)	329
PaeR7I	CTCGAG	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	6 cut(s)	276, 396, 414, 599, 602, 669
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	9, 194
PflMI	CCANNNNNTGG	2 cut(s)	250, 438
PkrI	GCNGC	3 cut(s)	416, 553, 653
Psp6I	CCWGG	2 cut(s)	437, 449
PspGI	CCWGG	2 cut(s)	437, 449
PspN4I	GGNNCC	6 cut(s)	26, 296, 343, 394, 443, 482
PspPI	GGNCC	5 cut(s)	302, 392, 442, 481, 685
PspXI	VCTCGAGB	1 cut(s)	284
RsaI	GTAC	2 cut(s)	97, 491
RsaNI	GTAC	2 cut(s)	96, 490
SalI	GTCGAC	1 cut(s)	604
SatI	GCNGC	3 cut(s)	415, 552, 652
Sau3AI	GATC	1 cut(s)	267
Sau96I	GGNCC	5 cut(s)	302, 392, 442, 481, 685
ScaI	AGTACT	1 cut(s)	491
ScrFI	CCNGG	6 cut(s)	22, 439, 451, 478, 577, 678
SetI	ASST	7 cut(s)	43, 82, 181, 242, 252, 285, 623
SfaNI	GCATC	3 cut(s)	220, 315, 339
Sfr274I	CTCGAG	1 cut(s)	284
SinI	GGWCC	4 cut(s)	302, 442, 481, 685
SlaI	CTCGAG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	59, 119
SsiI	CCGC	8 cut(s)	83, 137, 305, 421, 484, 549, 552, 558
StyD4I	CCNGG	6 cut(s)	20, 437, 449, 476, 575, 676
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	4 cut(s)	259, 400, 457, 511
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	4 cut(s)	205, 285, 408, 605
TaqII	GACCGA	1 cut(s)	649
TasI	AATT	2 cut(s)	59, 119
TatI	WGTACW	2 cut(s)	95, 489
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	2 cut(s)	9, 194
TscAI	CASTG	2 cut(s)	196, 635
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	2 cut(s)	414, 651
Tsp45I	GTSAC	1 cut(s)	511
TspGWI	ACGGA	2 cut(s)	628, 661
TspRI	CASTG	2 cut(s)	196, 635
Van91I	CCANNNNNTGG	2 cut(s)	250, 438
VpaK11BI	GGWCC	4 cut(s)	302, 442, 481, 685
XagI	CCTNNNNNAGG	1 cut(s)	407
XapI	RAATTY	2 cut(s)	59, 119
XhoI	CTCGAG	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	605
XmnI	GAANNNNTTC	1 cut(s)	357
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.