Rh5DG502900

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0005419
Physical Location & Seq
Reverse (-)
78732297 .. 78739903
7607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG502900.1

Sequence Viewer

Length: 504 bp
ATGAGAGCTCCAAAACTGGCTAACCCTCGAGAATGTGGCCTGGAGGGAGAAAAGAAAGGAGACTTGGAGTCTCGCAACAAGCGAGCCGTGACGGCTCTGTACGACGCCTTCAACTCCAAAGACGTTGACGTTGTTCACCTCCTCCTCGCGCCCTACCTAGAGTGGTGGTTCCATGGCCCCCCTACTCATCAGCATTTGAACCGCCTCCTCACCGGTGCGCCGCCGTACGACTCGTCGTTCATATTCCTTCCTCTGTCGATTGTTGCATTCGGATCAATGGTGGTGGCTGAGGGATACGAGGAGGGTCATTCGGTCTCGTGGGTGCACGCGTGGACCGTCACAGATGGGATAATTACCCAAGTGAGGGAGTACTACAACACGTCCGTCACGGTTACCAGGTTAATCTCACCGGAAACTACATCACGGTCAGGTAGTTGCCAGAGTGTTTGGGAGAGTAAGCTCTCTGATAATAAGTCTGTACCTGGCCTCGTATTGGCCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

167

Amino Acids

18.56

Weight (kDa)

6.05

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WI12 PF07107 68 - 167 1.8e-37 Wound-induced protein WI12
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 149, 329
AciI CCGC 2 cut(s) 202, 221
AclWI GGATC 1 cut(s) 280
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 4 cut(s) 101, 227, 371, 480
AfiI CCNNNNNNNGG 3 cut(s) 363, 364, 493
AflIII ACRYGT 2 cut(s) 327, 378
AgeI ACCGGT 1 cut(s) 212
AgsI TTSAA 2 cut(s) 112, 199
AhdI GACNNNNNGTC 1 cut(s) 67
AjiI CACGTC 1 cut(s) 381
AjnI CCWGG 3 cut(s) 39, 395, 481
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AluBI AGCT 2 cut(s) 8, 460
AluI AGCT 2 cut(s) 8, 460
Alw21I GWGCWC 2 cut(s) 10, 327
Alw26I GTCTC 3 cut(s) 54, 75, 319
Alw44I GTGCAC 1 cut(s) 323
AlwI GGATC 1 cut(s) 280
Ama87I CYCGRG 1 cut(s) 27
AoxI GGCC 4 cut(s) 37, 175, 484, 495
ApaLI GTGCAC 1 cut(s) 323
AsiGI ACCGGT 1 cut(s) 212
AspLEI GCGC 2 cut(s) 151, 220
AspS9I GGNCC 3 cut(s) 176, 333, 496
AsuHPI GGTGA 3 cut(s) 128, 202, 399
AvaI CYCGRG 1 cut(s) 27
AvaII GGWCC 1 cut(s) 333
BaeGI GKGCMC 1 cut(s) 327
BanII GRGCYC 1 cut(s) 10
BarI GAAGNNNNNNTAC 2 cut(s) 92, 124
BauI CACGAG 1 cut(s) 316
Bbv12I GWGCWC 2 cut(s) 10, 327
BbvCI CCTCAGC 1 cut(s) 288
BccI CCATC 1 cut(s) 338
BceAI ACGGC 3 cut(s) 71, 108, 208
BciT130I CCWGG 3 cut(s) 41, 397, 483
BciVI GTATCC 1 cut(s) 287
BcoDI GTCTC 3 cut(s) 54, 75, 319
BfaI CTAG 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 500
BfuI GTATCC 1 cut(s) 287
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
BmcAI AGTACT 1 cut(s) 371
Bme1390I CCNGG 3 cut(s) 41, 397, 483
Bme18I GGWCC 1 cut(s) 333
BmeRI GACNNNNNGTC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 27
BmgBI CACGTC 1 cut(s) 381
BmgT120I GGNCC 3 cut(s) 176, 333, 496
BmiI GGNNCC 2 cut(s) 170, 178
BmrFI CCNGG 3 cut(s) 41, 397, 483
BpmI CTGGAG 1 cut(s) 62
Bpu10I CCTNAGC 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 172
BsaWI WCCGGW 2 cut(s) 212, 409
Bsc4I CCNNNNNNNGG 3 cut(s) 363, 364, 493
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 21
BseBI CCWGG 3 cut(s) 41, 397, 483
BseDI CCNNGG 1 cut(s) 172
BseLI CCNNNNNNNGG 3 cut(s) 363, 364, 493
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 4 cut(s) 131, 134, 197, 314
BseSI GKGCMC 1 cut(s) 327
Bsh1236I CGCG 2 cut(s) 149, 329
BshFI GGCC 4 cut(s) 39, 177, 486, 497
BshTI ACCGGT 1 cut(s) 212
BsiHKAI GWGCWC 2 cut(s) 10, 327
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 2 cut(s) 213, 410
BsiWI CGTACG 1 cut(s) 225
BslI CCNNNNNNNGG 3 cut(s) 363, 364, 493
BsmAI GTCTC 3 cut(s) 54, 75, 319
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 4 cut(s) 39, 177, 486, 497
Bso31I GGTCTC 1 cut(s) 319
BsoBI CYCGRG 1 cut(s) 27
Bsp1286I GDGCHC 2 cut(s) 10, 327
Bsp143I GATC 1 cut(s) 272
Bsp19I CCATGG 1 cut(s) 172
BspACI CCGC 2 cut(s) 202, 221
BspANI GGCC 4 cut(s) 39, 177, 486, 497
BspCNI CTCAG 1 cut(s) 280
BspFNI CGCG 2 cut(s) 149, 329
BspLI GGNNCC 2 cut(s) 170, 178
BspPI GGATC 1 cut(s) 280
BspTNI GGTCTC 1 cut(s) 319
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 1 cut(s) 21
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 1 cut(s) 272
BssNI GRCGYC 1 cut(s) 105
BssSI CACGAG 1 cut(s) 316
BssT1I CCWWGG 1 cut(s) 172
Bst2BI CACGAG 1 cut(s) 316
Bst2UI CCWGG 3 cut(s) 41, 397, 483
Bst4CI ACNGT 3 cut(s) 337, 391, 426
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 84, 327
BstDEI CTNAG 1 cut(s) 288
BstDSI CCRYGG 1 cut(s) 172
BstEII GGTNACC 1 cut(s) 391
BstFNI CGCG 2 cut(s) 149, 329
BstHHI GCGC 2 cut(s) 151, 220
BstKTI GATC 1 cut(s) 275
BstMAI GTCTC 3 cut(s) 54, 75, 319
BstMBI GATC 1 cut(s) 272
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 3 cut(s) 41, 397, 483
BstPI GGTNACC 1 cut(s) 391
BstSCI CCNGG 3 cut(s) 39, 395, 481
BstSFI CTRYAG 1 cut(s) 500
BstSLI GKGCMC 1 cut(s) 327
BstUI CGCG 2 cut(s) 149, 329
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 4 cut(s) 39, 177, 486, 497
BtgI CCRYGG 1 cut(s) 172
BtrI CACGTC 1 cut(s) 381
Cac8I GCNNGC 2 cut(s) 84, 327
CfoI GCGC 2 cut(s) 151, 220
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 3 cut(s) 176, 333, 496
CseI GACGC 1 cut(s) 113
CsiI ACCWGGT 1 cut(s) 395
Csp6I GTAC 4 cut(s) 100, 226, 370, 479
CspAI ACCGGT 1 cut(s) 212
CspCI CAANNNNNGTGG 2 cut(s) 264, 299
CviAII CATG 1 cut(s) 173
CviQI GTAC 4 cut(s) 100, 226, 370, 479
DdeI CTNAG 1 cut(s) 288
DpnI GATC 1 cut(s) 274
DpnII GATC 1 cut(s) 272
DriI GACNNNNNGTC 1 cut(s) 67
Eam1105I GACNNNNNGTC 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 8
Eco130I CCWWGG 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 333
Eco53kI GAGCTC 1 cut(s) 8
Eco88I CYCGRG 1 cut(s) 27
Eco91I GGTNACC 1 cut(s) 391
EcoICRI GAGCTC 1 cut(s) 8
EcoO65I GGTNACC 1 cut(s) 391
EcoRII CCWGG 3 cut(s) 39, 395, 481
EcoT14I CCWWGG 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 1 cut(s) 176
FaiI YATR 3 cut(s) 174, 242, 502
FatI CATG 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 221
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 221
FspBI CTAG 1 cut(s) 158
GlaI GCGC 2 cut(s) 150, 219
GluI GCNGC 1 cut(s) 221
GsuI CTGGAG 1 cut(s) 62
HaeIII GGCC 4 cut(s) 39, 177, 486, 497
HapII CCGG 2 cut(s) 213, 410
HgaI GACGC 1 cut(s) 113
HhaI GCGC 2 cut(s) 151, 220
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 1 cut(s) 176
Hin6I GCGC 2 cut(s) 149, 218
HinP1I GCGC 2 cut(s) 149, 218
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 2 cut(s) 68, 230
HpaII CCGG 2 cut(s) 213, 410
HphI GGTGA 3 cut(s) 128, 202, 399
Hpy166II GTNNAC 4 cut(s) 127, 136, 325, 333
Hpy188I TCNGA 2 cut(s) 272, 466
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 4 cut(s) 127, 136, 325, 333
Hpy99I CGWCG 2 cut(s) 107, 238
HpyAV CCTTC 2 cut(s) 118, 257
HpyCH4III ACNGT 3 cut(s) 337, 391, 426
HpyCH4IV ACGT 3 cut(s) 123, 129, 380
HpyCH4V TGCA 2 cut(s) 266, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 3 cut(s) 123, 129, 380
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 1 cut(s) 176
HspAI GCGC 2 cut(s) 149, 218
Kzo9I GATC 1 cut(s) 272
LmnI GCTCC 1 cut(s) 13
MabI ACCWGGT 1 cut(s) 395
MaeI CTAG 1 cut(s) 158
MaeII ACGT 3 cut(s) 123, 129, 380
MaeIII GTNAC 4 cut(s) 88, 337, 385, 391
MalI GATC 1 cut(s) 274
MboI GATC 1 cut(s) 272
MhlI GDGCHC 2 cut(s) 10, 327
MluCI AATT 1 cut(s) 351
MluI ACGCGT 1 cut(s) 327
MlyI GAGTC 2 cut(s) 77, 224
MseI TTAA 1 cut(s) 401
MspI CCGG 2 cut(s) 213, 410
MspR9I CCNGG 3 cut(s) 41, 397, 483
Mva1269I GAATGC 1 cut(s) 266
MvaI CCWGG 3 cut(s) 41, 397, 483
MvnI CGCG 2 cut(s) 149, 329
MwoI GCNNNNNNNGC 1 cut(s) 92
NcoI CCATGG 1 cut(s) 172
NdeII GATC 1 cut(s) 272
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 2 cut(s) 170, 178
NmuCI GTSAC 3 cut(s) 88, 337, 385
PaeR7I CTCGAG 1 cut(s) 27
PcsI WCGNNNNNNNCGW 2 cut(s) 79, 333
PctI GAATGC 1 cut(s) 266
Pfl23II CGTACG 1 cut(s) 225
PinAI ACCGGT 1 cut(s) 212
PkrI GCNGC 1 cut(s) 222
PleI GAGTC 2 cut(s) 76, 224
PpsI GAGTC 2 cut(s) 76, 224
Psp124BI GAGCTC 1 cut(s) 10
Psp6I CCWGG 3 cut(s) 39, 395, 481
PspEI GGTNACC 1 cut(s) 391
PspGI CCWGG 3 cut(s) 39, 395, 481
PspLI CGTACG 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 170, 178
PspPI GGNCC 3 cut(s) 176, 333, 496
RsaI GTAC 4 cut(s) 101, 227, 371, 480
RsaNI GTAC 4 cut(s) 100, 226, 370, 479
SacI GAGCTC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 1 cut(s) 272
Sau96I GGNCC 3 cut(s) 176, 333, 496
ScaI AGTACT 1 cut(s) 371
SchI GAGTC 2 cut(s) 77, 224
ScrFI CCNGG 3 cut(s) 41, 397, 483
SduI GDGCHC 2 cut(s) 10, 327
SexAI ACCWGGT 1 cut(s) 395
SfcI CTRYAG 1 cut(s) 500
Sfr274I CTCGAG 1 cut(s) 27
SgrAI CRCCGGYG 1 cut(s) 212
SinI GGWCC 1 cut(s) 333
SlaI CTCGAG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 1 cut(s) 351
SsiI CCGC 2 cut(s) 202, 221
SspMI CTAG 1 cut(s) 158
SstI GAGCTC 1 cut(s) 10
StyD4I CCNGG 3 cut(s) 39, 395, 481
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 3 cut(s) 337, 391, 426
TaiI ACGT 3 cut(s) 126, 132, 383
TaqI TCGA 2 cut(s) 28, 257
TaqII GACCGA 1 cut(s) 301
TasI AATT 1 cut(s) 351
TatI WGTACW 1 cut(s) 369
TauI GCSGC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TseFI GTSAC 3 cut(s) 88, 337, 385
Tsp45I GTSAC 3 cut(s) 88, 337, 385
TspDTI ATGAA 1 cut(s) 229
TspGWI ACGGA 1 cut(s) 373
VneI GTGCAC 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 333
XhoI CTCGAG 1 cut(s) 27
XspI CTAG 1 cut(s) 158
ZrmI AGTACT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.