Rroxscaffold_1G00009270

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005419
Physical Location & Seq
Forward (+)
11629315 .. 11631353
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00009270.1

Sequence Viewer

Length: 684 bp
ATGAATGGAGAAGAGAGGAGAAGGTCACAGTTCGGCCAGTTACGTCGACTATATGGGCTCCCCCAGCCGAGAACCAAACCGCACACGCCTACGACGTCGATCGATGTTATGCAGTGTGATCACGGTGATGTTGGCTTCCACATTCAAAGCCACCATTTCCAGAACTCAAAGCCTCAACAACTCCGAGCTCCAAAACTGGCTAACCCTCGAGAATGTGGCCTGGAGGGAGAAAAGAAAGGAGACTTGGAGTCTCGCAACAAGCGAGCCGTGACGGCTCTGTACGACGCCTTCAACTCCAAAGACGTTGACGTTGTTCACCTCCTCCTCGCCCCCTACCTAGAGTGGTGGTTCCATGGCCCCCCTACTCATCAGCATTTGAACCGCCTCCTCACCGGTGCGCCGCCGTACGACTCGTCGTTCATATTCCTTCCTCTGTCGATTGTTGCATTCGGATCTATGGTGGTGGCTGAGGGATACGAGGAGGGTCATTCGGTGTCGTGGGTGCACGCGTGGACCGTCACAGATGGGATAATTACCCAAGTGAGGGAGTACTACAACACGTCCGTCACGGTTACCAGGTTAATCTCACCGGAAACTACATCACGGTCAGGTAGTTGCCAGAGTGTTTGGGAGAGTAAGCTCTTTGATAATAAGTCTGTACCTGGCCTCGTATTGGCCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

227

Amino Acids

25.59

Weight (kDa)

7.19

Isoelectric Point (pI)

47.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WI12 PF07107 128 - 227 1.5e-36 Wound-induced protein WI12
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 98
AccI GTMKAC 1 cut(s) 46
AccII CGCG 1 cut(s) 509
AciI CCGC 3 cut(s) 80, 382, 401
AclWI GGATC 1 cut(s) 460
AcoI YGGCCR 1 cut(s) 34
AcyI GRCGYC 2 cut(s) 95, 285
AfaI GTAC 4 cut(s) 281, 407, 551, 660
AfiI CCNNNNNNNGG 3 cut(s) 543, 544, 673
AflIII ACRYGT 2 cut(s) 507, 558
AgeI ACCGGT 1 cut(s) 392
AgsI TTSAA 3 cut(s) 146, 292, 379
AhdI GACNNNNNGTC 1 cut(s) 247
AjiI CACGTC 1 cut(s) 561
AjnI CCWGG 3 cut(s) 219, 575, 661
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 2 cut(s) 188, 640
AluI AGCT 2 cut(s) 188, 640
Alw21I GWGCWC 2 cut(s) 190, 507
Alw26I GTCTC 2 cut(s) 234, 255
Alw44I GTGCAC 1 cut(s) 503
AlwI GGATC 1 cut(s) 460
Ama87I CYCGRG 1 cut(s) 207
AoxI GGCC 5 cut(s) 34, 217, 355, 664, 675
ApaLI GTGCAC 1 cut(s) 503
AsiGI ACCGGT 1 cut(s) 392
AspLEI GCGC 1 cut(s) 400
AspS9I GGNCC 3 cut(s) 356, 513, 676
AsuHPI GGTGA 4 cut(s) 137, 308, 382, 579
AvaI CYCGRG 1 cut(s) 207
AvaII GGWCC 1 cut(s) 513
BaeGI GKGCMC 1 cut(s) 507
BanII GRGCYC 2 cut(s) 60, 190
BarI GAAGNNNNNNTAC 2 cut(s) 272, 304
Bbv12I GWGCWC 2 cut(s) 190, 507
BbvCI CCTCAGC 1 cut(s) 468
BccI CCATC 1 cut(s) 518
BceAI ACGGC 3 cut(s) 251, 288, 388
BciT130I CCWGG 3 cut(s) 221, 577, 663
BciVI GTATCC 1 cut(s) 467
BclI TGATCA 1 cut(s) 118
BcoDI GTCTC 2 cut(s) 234, 255
BfaI CTAG 1 cut(s) 338
BfmI CTRYAG 1 cut(s) 680
BfuI GTATCC 1 cut(s) 467
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 1 cut(s) 401
BlsI GCNGC 1 cut(s) 402
BmcAI AGTACT 1 cut(s) 551
Bme1390I CCNGG 3 cut(s) 221, 577, 663
Bme18I GGWCC 1 cut(s) 513
BmeRI GACNNNNNGTC 1 cut(s) 247
BmeT110I CYCGRG 1 cut(s) 207
BmgBI CACGTC 1 cut(s) 561
BmgT120I GGNCC 3 cut(s) 356, 513, 676
BmiI GGNNCC 3 cut(s) 59, 350, 358
BmrFI CCNGG 3 cut(s) 221, 577, 663
BpmI CTGGAG 1 cut(s) 242
Bpu10I CCTNAGC 1 cut(s) 468
Bsa29I ATCGAT 1 cut(s) 102
BsaHI GRCGYC 2 cut(s) 95, 285
BsaJI CCNNGG 1 cut(s) 352
BsaWI WCCGGW 2 cut(s) 392, 589
Bsc4I CCNNNNNNNGG 3 cut(s) 543, 544, 673
Bse118I RCCGGY 1 cut(s) 392
Bse1I ACTGG 2 cut(s) 37, 201
BseBI CCWGG 3 cut(s) 221, 577, 663
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 352
BseLI CCNNNNNNNGG 3 cut(s) 543, 544, 673
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 2 cut(s) 37, 201
BseRI GAGGAG 5 cut(s) 31, 311, 314, 377, 494
BseSI GKGCMC 1 cut(s) 507
BseYI CCCAGC 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 509
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 5 cut(s) 36, 219, 357, 666, 677
BshTI ACCGGT 1 cut(s) 392
BshVI ATCGAT 1 cut(s) 102
BsiEI CGRYCG 1 cut(s) 102
BsiHKAI GWGCWC 2 cut(s) 190, 507
BsiHKCI CYCGRG 1 cut(s) 207
BsiSI CCGG 2 cut(s) 393, 590
BsiWI CGTACG 1 cut(s) 405
BslI CCNNNNNNNGG 3 cut(s) 543, 544, 673
BsmAI GTCTC 2 cut(s) 234, 255
BsmI GAATGC 1 cut(s) 446
BsnI GGCC 5 cut(s) 36, 219, 357, 666, 677
BsoBI CYCGRG 1 cut(s) 207
Bsp1286I GDGCHC 3 cut(s) 60, 190, 507
Bsp143I GATC 3 cut(s) 99, 118, 452
Bsp19I CCATGG 1 cut(s) 352
BspACI CCGC 3 cut(s) 80, 382, 401
BspANI GGCC 5 cut(s) 36, 219, 357, 666, 677
BspCNI CTCAG 1 cut(s) 460
BspDI ATCGAT 1 cut(s) 102
BspFNI CGCG 1 cut(s) 509
BspLI GGNNCC 3 cut(s) 59, 350, 358
BspPI GGATC 1 cut(s) 460
BsrFI RCCGGY 1 cut(s) 392
BsrI ACTGG 2 cut(s) 37, 201
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 3 cut(s) 99, 118, 452
BssNI GRCGYC 2 cut(s) 95, 285
BssT1I CCWWGG 1 cut(s) 352
Bst2UI CCWGG 3 cut(s) 221, 577, 663
Bst4CI ACNGT 5 cut(s) 30, 125, 517, 571, 606
Bst6I CTCTTC 1 cut(s) 6
BstACI GRCGYC 2 cut(s) 95, 285
BstC8I GCNNGC 2 cut(s) 264, 507
BstDEI CTNAG 1 cut(s) 468
BstDSI CCRYGG 1 cut(s) 352
BstEII GGTNACC 1 cut(s) 571
BstFNI CGCG 1 cut(s) 509
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 3 cut(s) 102, 121, 455
BstMAI GTCTC 2 cut(s) 234, 255
BstMBI GATC 3 cut(s) 99, 118, 452
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 2 cut(s) 64, 272
BstNI CCWGG 3 cut(s) 221, 577, 663
BstPI GGTNACC 1 cut(s) 571
BstSCI CCNGG 3 cut(s) 219, 575, 661
BstSFI CTRYAG 1 cut(s) 680
BstSLI GKGCMC 1 cut(s) 507
BstUI CGCG 1 cut(s) 509
BstX2I RGATCY 1 cut(s) 452
BstYI RGATCY 1 cut(s) 452
Bsu15I ATCGAT 1 cut(s) 102
BsuI GTATCC 1 cut(s) 467
BsuRI GGCC 5 cut(s) 36, 219, 357, 666, 677
BsuTUI ATCGAT 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 352
BtrI CACGTC 1 cut(s) 561
BtsI GCAGTG 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 119
Cac8I GCNNGC 2 cut(s) 264, 507
CfoI GCGC 1 cut(s) 400
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 3 cut(s) 356, 513, 676
ClaI ATCGAT 1 cut(s) 102
CseI GACGC 1 cut(s) 293
CsiI ACCWGGT 1 cut(s) 575
Csp6I GTAC 4 cut(s) 280, 406, 550, 659
CspAI ACCGGT 1 cut(s) 392
CviAII CATG 1 cut(s) 353
CviQI GTAC 4 cut(s) 280, 406, 550, 659
DdeI CTNAG 1 cut(s) 468
DpnI GATC 3 cut(s) 101, 120, 454
DpnII GATC 3 cut(s) 99, 118, 452
DriI GACNNNNNGTC 1 cut(s) 247
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 6
Eam1105I GACNNNNNGTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 6
Ecl136II GAGCTC 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 352
Eco24I GRGCYC 2 cut(s) 60, 190
Eco47I GGWCC 1 cut(s) 513
Eco53kI GAGCTC 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 207
Eco91I GGTNACC 1 cut(s) 571
EcoICRI GAGCTC 1 cut(s) 188
EcoO65I GGTNACC 1 cut(s) 571
EcoRII CCWGG 3 cut(s) 219, 575, 661
EcoT14I CCWWGG 1 cut(s) 352
EcoT38I GRGCYC 2 cut(s) 60, 190
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 1 cut(s) 356
FaiI YATR 7 cut(s) 52, 54, 110, 354, 422, 458, 682
FatI CATG 1 cut(s) 352
FbaI TGATCA 1 cut(s) 118
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 401
FriOI GRGCYC 2 cut(s) 60, 190
Fsp4HI GCNGC 1 cut(s) 401
FspBI CTAG 1 cut(s) 338
GlaI GCGC 1 cut(s) 399
GluI GCNGC 1 cut(s) 401
GsaI CCCAGC 1 cut(s) 67
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 5 cut(s) 36, 219, 357, 666, 677
HapII CCGG 2 cut(s) 393, 590
HgaI GACGC 1 cut(s) 293
HhaI GCGC 1 cut(s) 400
Hin1I GRCGYC 2 cut(s) 95, 285
Hin1II CATG 1 cut(s) 356
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HincII GTYRAC 2 cut(s) 47, 307
HindII GTYRAC 2 cut(s) 47, 307
HinfI GANTC 2 cut(s) 248, 410
HpaII CCGG 2 cut(s) 393, 590
HphI GGTGA 4 cut(s) 137, 308, 382, 579
Hpy166II GTNNAC 5 cut(s) 47, 307, 316, 505, 513
Hpy188I TCNGA 2 cut(s) 185, 452
Hpy188III TCNNGA 2 cut(s) 160, 209
Hpy8I GTNNAC 5 cut(s) 47, 307, 316, 505, 513
Hpy99I CGWCG 5 cut(s) 48, 97, 100, 287, 418
HpyAV CCTTC 3 cut(s) 15, 298, 437
HpyCH4III ACNGT 5 cut(s) 30, 125, 517, 571, 606
HpyCH4IV ACGT 5 cut(s) 43, 95, 303, 309, 560
HpyCH4V TGCA 3 cut(s) 112, 446, 505
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 272
HpyF3I CTNAG 1 cut(s) 468
HpySE526I ACGT 5 cut(s) 43, 95, 303, 309, 560
Hsp92I GRCGYC 2 cut(s) 95, 285
Hsp92II CATG 1 cut(s) 356
HspAI GCGC 1 cut(s) 398
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 3 cut(s) 99, 118, 452
LmnI GCTCC 2 cut(s) 63, 193
MabI ACCWGGT 1 cut(s) 575
MaeI CTAG 1 cut(s) 338
MaeII ACGT 5 cut(s) 43, 95, 303, 309, 560
MaeIII GTNAC 6 cut(s) 24, 39, 268, 517, 565, 571
MalI GATC 3 cut(s) 101, 120, 454
MboI GATC 3 cut(s) 99, 118, 452
MboII GAAGA 1 cut(s) 23
MflI RGATCY 1 cut(s) 452
MhlI GDGCHC 3 cut(s) 60, 190, 507
MluCI AATT 1 cut(s) 531
MluI ACGCGT 1 cut(s) 507
MlyI GAGTC 2 cut(s) 257, 404
MseI TTAA 1 cut(s) 581
MslI CAYNNNNRTG 1 cut(s) 126
MspI CCGG 2 cut(s) 393, 590
MspR9I CCNGG 3 cut(s) 221, 577, 663
Mva1269I GAATGC 1 cut(s) 446
MvaI CCWGG 3 cut(s) 221, 577, 663
MvnI CGCG 1 cut(s) 509
MwoI GCNNNNNNNGC 2 cut(s) 64, 272
NcoI CCATGG 1 cut(s) 352
NdeII GATC 3 cut(s) 99, 118, 452
NlaIII CATG 1 cut(s) 356
NlaIV GGNNCC 3 cut(s) 59, 350, 358
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 4 cut(s) 24, 268, 517, 565
PaeR7I CTCGAG 1 cut(s) 207
PcsI WCGNNNNNNNCGW 3 cut(s) 92, 259, 513
PctI GAATGC 1 cut(s) 446
Pfl23II CGTACG 1 cut(s) 405
PinAI ACCGGT 1 cut(s) 392
PkrI GCNGC 1 cut(s) 402
Ple19I CGATCG 1 cut(s) 102
PleI GAGTC 2 cut(s) 256, 404
PpsI GAGTC 2 cut(s) 256, 404
Psp124BI GAGCTC 1 cut(s) 190
Psp6I CCWGG 3 cut(s) 219, 575, 661
PspEI GGTNACC 1 cut(s) 571
PspFI CCCAGC 1 cut(s) 63
PspGI CCWGG 3 cut(s) 219, 575, 661
PspLI CGTACG 1 cut(s) 405
PspN4I GGNNCC 3 cut(s) 59, 350, 358
PspPI GGNCC 3 cut(s) 356, 513, 676
PsuI RGATCY 1 cut(s) 452
PvuI CGATCG 1 cut(s) 102
RsaI GTAC 4 cut(s) 281, 407, 551, 660
RsaNI GTAC 4 cut(s) 280, 406, 550, 659
RseI CAYNNNNRTG 1 cut(s) 126
SacI GAGCTC 1 cut(s) 190
SalI GTCGAC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 581
SatI GCNGC 1 cut(s) 401
Sau3AI GATC 3 cut(s) 99, 118, 452
Sau96I GGNCC 3 cut(s) 356, 513, 676
ScaI AGTACT 1 cut(s) 551
SchI GAGTC 2 cut(s) 257, 404
ScrFI CCNGG 3 cut(s) 221, 577, 663
SduI GDGCHC 3 cut(s) 60, 190, 507
SexAI ACCWGGT 1 cut(s) 575
SfcI CTRYAG 1 cut(s) 680
Sfr274I CTCGAG 1 cut(s) 207
SgrAI CRCCGGYG 1 cut(s) 392
SinI GGWCC 1 cut(s) 513
SlaI CTCGAG 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
Sse9I AATT 1 cut(s) 531
SsiI CCGC 3 cut(s) 80, 382, 401
SspMI CTAG 1 cut(s) 338
SstI GAGCTC 1 cut(s) 190
StyD4I CCNGG 3 cut(s) 219, 575, 661
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 5 cut(s) 30, 125, 517, 571, 606
TaiI ACGT 5 cut(s) 46, 98, 306, 312, 563
TaqI TCGA 5 cut(s) 46, 98, 102, 208, 437
TasI AATT 1 cut(s) 531
TatI WGTACW 1 cut(s) 549
TauI GCSGC 1 cut(s) 403
Tru1I TTAA 1 cut(s) 581
Tru9I TTAA 1 cut(s) 581
TscAI CASTG 1 cut(s) 119
TseFI GTSAC 4 cut(s) 24, 268, 517, 565
Tsp45I GTSAC 4 cut(s) 24, 268, 517, 565
TspDTI ATGAA 2 cut(s) 17, 409
TspGWI ACGGA 1 cut(s) 553
TspRI CASTG 1 cut(s) 119
VneI GTGCAC 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 513
XhoI CTCGAG 1 cut(s) 207
XmiI GTMKAC 1 cut(s) 46
XspI CTAG 1 cut(s) 338
ZraI GACGTC 1 cut(s) 96
ZrmI AGTACT 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.