AT3G16650

Pleiotropic regulatory locus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002996
Physical Location & Seq
Forward (+)
5671018 .. 5675438
4421 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16650.1

Sequence Viewer

Length: 1440 bp
ATGACGATGATAGCTTTGAACAGGGAGGTCGAAACTCAGTCACTGAAAAAACTCAGTCTAAAATCTGTTAGACGAGCTCGTGAAATTTTCTCCCCCGTCCATGGCCAATTTCCTCAGCCTGATCCTGAAAGCAAAAGAATTCGGCTCTGCCATAAGATTCAAGTTGCATTTGGAGGCGTAGAACCTGCAAGTAAGCCTACACGTATTGCTGACCATAACAGTGAAAAGACGGCTCCATTGAAAGCCCTTGCGCTTCCAGGTCCAAAAGGGTCCAAGGAACTTCGAAAAAGCGCAACAGAGAAAGCTTTAGTTGTTGGTCCAACTTTACCGCCAAGAGACTTGAACAATACTGGTAATCCAGGCAAAAGCACGGCCATTCTTCCTGCACCTGGATCATTTTCCGAAAGAAATCTGTCAACTGCTGCTTTAATGGAGAGAATGCCTAGTAGATGGCCCCGTCCAGAGTGGCATGCACCATGGAAGAATTACAGGGTGCTCCAGGGACACTTGGGTTGGGTCAGATCTGTTGCGTTTGACCCAAGCAATGAATGGTTTTGCACTGGTTCAGCTGATCGTACCATCAAGATATGGGATGTAGCGACTGGAGTTCTGAAACTCACACTTACTGGACATATAGGGCAAGTACGAGGCCTCGCTGTAAGCAATAGACATACCTATATGTTTTCTGCTGGTGATGACAAGCAAGTCAAATGCTGGGACCTTGAGCAGAATAAGGTTATTCGATCTTATCATGGTCATTTGCATGGCGTTTACTGTTTAGCTCTTCATCCTACTCTTGATGTTGTACTAACCGGAGGGCGAGACTCTGTCTGCAGGGTATGGGATATCCGTACGAAGATGCAAATTTTTGTACTCCCACATGACAGCGATGTTTTTTCCGTTTTGGCCCGCCCAACTGATCCACAAGTTATTACAGGGTCTCATGACTCAACCATCAAATTTTGGGACCTCCGATATGGCAAATCGATGGCAACCATAACGAATCATAAGAAGACTGTCCGAGCAATGGCTCTCCATCCGAAAGAGAATGATTTTGTTTCTGCATCAGCTGACAACATCAAGAAGTTTAGCCTTCCTAAGGGAGAGTTTTGCCACAACATGCTTTCTCTACAGAGAGACATAATTAACGCAGTGGCTGTGAATGAGGATGGCGTAATGGTCACTGGAGGTGATAAAGGTGGCTTATGGTTCTGGGACTGGAAGAGTGGTCACAATTTCCAACGGGCAGAAACTATTGTACAGCCTGGTTCGCTGGAGAGTGAAGCAGGTATATATGCAGCGTGTTACGATCAGACGGGTTCAAGGCTGGTAACGTGTGAGGGAGACAAAACAATAAAGATGTGGAAGGAAGACGAGGATGCAACTCCTGAAACTCATCCTCTCAACTTCAAACCTCCCAAAGAGATCAGACGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000375 GO:0000377 GO:0000398 GO:0000974 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006508 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009743 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009870 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010154 GO:0010182 GO:0010204 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0031461 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034284 GO:0034641 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046483 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071011 GO:0071013 GO:0071310 GO:0071322 GO:0071495 GO:0071704 GO:0080008 GO:0080090 GO:0080134 GO:0090304 GO:0098542 GO:0099402 GO:1901360 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
WD40

Protein Analysis

479

Amino Acids

53.57

Weight (kDa)

9.34

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR41 PF25178 157 - 286 1.5e-10 WDR41
Beta-prop_THOC3 PF25174 160 - 245 5.3e-16 THOC3 beta-propeller domain
WD40 PF00400 161 - 198 1.6e-11 WD domain, G-beta repeat
WD40_MABP1-WDR62_2nd PF24782 161 - 241 2.1e-06 MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_2nd PF25172 161 - 282 9.1e-20 WDR3 second beta-propeller domain
Beta-prop_TEP1_2nd PF25047 162 - 289 3.7e-11 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 163 - 359 1.2e-24 CDC20/Fizzy WD40 domain
WD40_Gbeta PF25391 163 - 298 1.7e-18 G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st PF25173 164 - 283 1.3e-26 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 164 - 291 4.7e-21 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 166 - 302 3.6e-31 WDR5 beta-propeller domain
WDR55 PF24796 173 - 302 1.7e-11 WDR55
Beta-prop_ACSF4 PF13570 175 - 412 5.9e-07 Beta-alanine-activating enzyme, beta-propeller
Beta-prop_WDR90_POC16_2nd PF23393 175 - 245 5.5e-07 WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 182 - 360 4e-16 WDR36/Utp21 first beta-propeller
Beta-prop_SPT8 PF23798 184 - 277 5e-06 SPT8 beta propeller
Beta-prop_SCAP PF24017 186 - 333 1.9e-10 SCAP Beta-propeller
WD40 PF00400 204 - 240 2.7e-06 WD domain, G-beta repeat
EIF3I PF24805 206 - 298 4.1e-07 EIF3I
Beta-prop_TEP1_2nd PF25047 207 - 358 1.4e-10 TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 207 - 288 4.5e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 209 - 360 6.2e-12 WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3 PF25174 211 - 330 3.8e-18 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 212 - 288 5.3e-08 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 239 - 359 1.5e-21 WDR3 first beta-propeller domain
WD40 PF00400 245 - 282 1.5e-07 WD domain, G-beta repeat
Beta-prop_EML PF23409 248 - 462 7.7e-16 Echinoderm microtubule-associated protein first beta-propeller
WD40_Prp19 PF24814 256 - 455 7.6e-24 Prp19 WD40 domain
Beta-prop_WDR90_POC16_2nd PF23393 269 - 356 8.1e-06 WDR90/POC16, second beta-propeller
Beta-prop_WDR3_1st PF25173 280 - 456 1.8e-18 WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 294 - 362 1.1e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3 PF25174 294 - 458 3.5e-14 THOC3 beta-propeller domain
EIF3I PF24805 295 - 364 8.4e-06 EIF3I
WD40_WDHD1_1st PF24817 296 - 367 5e-06 WDHD1 first WD40 domain
WDR55 PF24796 305 - 409 3.5e-10 WDR55
WD40_Gbeta PF25391 307 - 410 1.1e-08 G protein beta WD-40 repeat protein
Beta-prop_WDR5 PF25175 309 - 458 2.5e-15 WDR5 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 340 - 458 2.4e-06 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 704
Acc36I ACCTGC 2 cut(s) 193, 1277
AciI CCGC 2 cut(s) 329, 910
AclWI GGATC 3 cut(s) 116, 400, 914
AcoI YGGCCR 2 cut(s) 103, 372
AcsI RAATTY 4 cut(s) 84, 138, 864, 959
AfaI GTAC 6 cut(s) 577, 645, 807, 853, 873, 1260
AfiI CCNNNNNNNGG 4 cut(s) 101, 389, 1027, 1099
AflIII ACRYGT 2 cut(s) 200, 1334
AgsI TTSAA 6 cut(s) 19, 161, 241, 343, 1323, 1411
AjnI CCWGG 5 cut(s) 256, 358, 388, 498, 1264
AluBI AGCT 6 cut(s) 14, 77, 305, 569, 782, 1070
AluI AGCT 6 cut(s) 14, 77, 305, 569, 782, 1070
Alw21I GWGCWC 2 cut(s) 79, 498
Alw26I GTCTC 5 cut(s) 330, 816, 945, 1131, 1338
AlwI GGATC 3 cut(s) 116, 400, 914
AlwNI CAGNNNCTG 2 cut(s) 43, 1157
AoxI GGCC 5 cut(s) 103, 372, 452, 649, 906
ApeKI GCWGC 2 cut(s) 422, 1298
ApoI RAATTY 4 cut(s) 84, 138, 864, 959
AspLEI GCGC 2 cut(s) 253, 293
AspS9I GGNCC 7 cut(s) 260, 270, 317, 453, 718, 907, 967
AsuHPI GGTGA 2 cut(s) 704, 1202
AsuII TTCGAA 1 cut(s) 283
AvaII GGWCC 5 cut(s) 260, 270, 317, 718, 967
AxyI CCTNAGG 1 cut(s) 1098
BalI TGGCCA 1 cut(s) 105
BanII GRGCYC 1 cut(s) 79
BauI CACGAG 1 cut(s) 78
BbsI GAAGAC 2 cut(s) 1019, 1377
Bbv12I GWGCWC 2 cut(s) 79, 498
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 409, 1310
BccI CCATC 6 cut(s) 444, 587, 962, 982, 1044, 1163
BceAI ACGGC 2 cut(s) 246, 387
BciT130I CCWGG 5 cut(s) 258, 360, 390, 500, 1266
BcoDI GTCTC 5 cut(s) 330, 816, 945, 1131, 1338
BfaI CTAG 1 cut(s) 444
BfmI CTRYAG 2 cut(s) 832, 1130
BfuAI ACCTGC 2 cut(s) 193, 1277
BglII AGATCT 1 cut(s) 521
BisI GCNGC 2 cut(s) 423, 1299
BlsI GCNGC 2 cut(s) 424, 1300
Bme1390I CCNGG 5 cut(s) 258, 360, 390, 500, 1266
Bme18I GGWCC 5 cut(s) 260, 270, 317, 718, 967
BmgT120I GGNCC 7 cut(s) 260, 270, 317, 453, 718, 907, 967
BmiI GGNNCC 5 cut(s) 234, 271, 455, 719, 968
BmrFI CCNGG 5 cut(s) 258, 360, 390, 500, 1266
BmsI GCATC 3 cut(s) 849, 1073, 1369
BpiI GAAGAC 2 cut(s) 1019, 1377
BpmI CTGGAG 4 cut(s) 482, 624, 1206, 1295
Bpu10I CCTNAGC 1 cut(s) 114
Bpu14I TTCGAA 1 cut(s) 283
BpuEI CTTGAG 1 cut(s) 743
Bsa29I ATCGAT 1 cut(s) 986
BsaAI YACGTR 1 cut(s) 203
BsaI GGTCTC 1 cut(s) 945
BsaJI CCNNGG 4 cut(s) 100, 273, 476, 499
BsaWI WCCGGW 1 cut(s) 812
Bsc4I CCNNNNNNNGG 4 cut(s) 101, 389, 1027, 1099
Bse1I ACTGG 6 cut(s) 355, 565, 607, 631, 1189, 1223
Bse21I CCTNAGG 1 cut(s) 1098
Bse3DI GCAATG 2 cut(s) 550, 1032
BseBI CCWGG 5 cut(s) 258, 360, 390, 500, 1266
BseCI ATCGAT 1 cut(s) 986
BseDI CCNNGG 4 cut(s) 100, 273, 476, 499
BseGI GGATG 6 cut(s) 598, 787, 1036, 1174, 1384, 1396
BseLI CCNNNNNNNGG 4 cut(s) 101, 389, 1027, 1099
BseMI GCAATG 2 cut(s) 550, 1032
BseMII CTCAG 3 cut(s) 50, 67, 128
BseNI ACTGG 6 cut(s) 355, 565, 607, 631, 1189, 1223
BseXI GCAGC 2 cut(s) 409, 1310
BseYI CCCAGC 1 cut(s) 714
BsgI GTGCAG 1 cut(s) 369
BshFI GGCC 5 cut(s) 105, 374, 454, 651, 908
BshVI ATCGAT 1 cut(s) 986
BsiHKAI GWGCWC 2 cut(s) 79, 498
BsiSI CCGG 1 cut(s) 813
BsiWI CGTACG 1 cut(s) 851
BslFI GGGAC 4 cut(s) 516, 731, 980, 1229
BslI CCNNNNNNNGG 4 cut(s) 101, 389, 1027, 1099
BsmAI GTCTC 5 cut(s) 330, 816, 945, 1131, 1338
BsmFI GGGAC 4 cut(s) 516, 731, 980, 1229
BsmI GAATGC 1 cut(s) 444
BsnI GGCC 5 cut(s) 105, 374, 454, 651, 908
Bso31I GGTCTC 1 cut(s) 945
Bsp119I TTCGAA 1 cut(s) 283
Bsp1286I GDGCHC 2 cut(s) 79, 498
Bsp1407I TGTACA 1 cut(s) 1258
Bsp143I GATC 8 cut(s) 121, 392, 521, 571, 743, 919, 1309, 1425
Bsp19I CCATGG 2 cut(s) 100, 476
BspACI CCGC 2 cut(s) 329, 910
BspANI GGCC 5 cut(s) 105, 374, 454, 651, 908
BspCNI CTCAG 3 cut(s) 49, 66, 127
BspDI ATCGAT 1 cut(s) 986
BspHI TCATGA 1 cut(s) 943
BspLI GGNNCC 5 cut(s) 234, 271, 455, 719, 968
BspMAI CTGCAG 1 cut(s) 836
BspMI ACCTGC 2 cut(s) 193, 1277
BspPI GGATC 3 cut(s) 116, 400, 914
BspQI GCTCTTC 1 cut(s) 789
BspT104I TTCGAA 1 cut(s) 283
BspTNI GGTCTC 1 cut(s) 945
BsrDI GCAATG 2 cut(s) 550, 1032
BsrGI TGTACA 1 cut(s) 1258
BsrI ACTGG 6 cut(s) 355, 565, 607, 631, 1189, 1223
BssECI CCNNGG 4 cut(s) 100, 273, 476, 499
BssMI GATC 8 cut(s) 121, 392, 521, 571, 743, 919, 1309, 1425
BssSI CACGAG 1 cut(s) 78
BssT1I CCWWGG 3 cut(s) 100, 273, 476
Bst2BI CACGAG 1 cut(s) 78
Bst2UI CCWGG 5 cut(s) 258, 360, 390, 500, 1266
Bst4CI ACNGT 3 cut(s) 221, 776, 1018
Bst6I CTCTTC 2 cut(s) 789, 1217
BstAUI TGTACA 1 cut(s) 1258
BstBAI YACGTR 1 cut(s) 203
BstBI TTCGAA 1 cut(s) 283
BstC8I GCNNGC 2 cut(s) 471, 910
BstDEI CTNAG 4 cut(s) 36, 53, 114, 1098
BstDSI CCRYGG 2 cut(s) 100, 476
BstENI CCTNNNNNAGG 1 cut(s) 1097
BstF5I GGATG 6 cut(s) 598, 787, 1036, 1174, 1384, 1396
BstHHI GCGC 2 cut(s) 253, 293
BstKTI GATC 8 cut(s) 124, 395, 524, 574, 746, 922, 1312, 1428
BstMAI GTCTC 5 cut(s) 330, 816, 945, 1131, 1338
BstMBI GATC 8 cut(s) 121, 392, 521, 571, 743, 919, 1309, 1425
BstMWI GCNNNNNNNGC 1 cut(s) 1270
BstNI CCWGG 5 cut(s) 258, 360, 390, 500, 1266
BstNSI RCATGY 2 cut(s) 473, 1123
BstSCI CCNGG 5 cut(s) 256, 358, 388, 498, 1264
BstSFI CTRYAG 2 cut(s) 832, 1130
BstV1I GCAGC 2 cut(s) 409, 1310
BstV2I GAAGAC 2 cut(s) 1019, 1377
BstX2I RGATCY 1 cut(s) 521
BstYI RGATCY 1 cut(s) 521
Bsu15I ATCGAT 1 cut(s) 986
Bsu36I CCTNAGG 1 cut(s) 1098
BsuRI GGCC 5 cut(s) 105, 374, 454, 651, 908
BsuTUI ATCGAT 1 cut(s) 986
BtgI CCRYGG 2 cut(s) 100, 476
BtgZI GCGATG 1 cut(s) 903
BtsCI GGATG 6 cut(s) 598, 787, 1036, 1174, 1384, 1396
BtsI GCAGTG 1 cut(s) 1158
BtsIMutI CAGTG 5 cut(s) 41, 226, 558, 1158, 1182
BveI ACCTGC 2 cut(s) 193, 1277
Cac8I GCNNGC 2 cut(s) 471, 910
CaiI CAGNNNCTG 2 cut(s) 43, 1157
CciI TCATGA 1 cut(s) 943
CfoI GCGC 2 cut(s) 253, 293
Cfr13I GGNCC 7 cut(s) 260, 270, 317, 453, 718, 907, 967
ClaI ATCGAT 1 cut(s) 986
Csp6I GTAC 6 cut(s) 576, 644, 806, 852, 872, 1259
CviAII CATG 8 cut(s) 101, 470, 477, 752, 764, 881, 944, 1120
CviQI GTAC 6 cut(s) 576, 644, 806, 852, 872, 1259
DdeI CTNAG 4 cut(s) 36, 53, 114, 1098
DpnI GATC 8 cut(s) 123, 394, 523, 573, 745, 921, 1311, 1427
DpnII GATC 8 cut(s) 121, 392, 521, 571, 743, 919, 1309, 1425
DrdI GACNNNNNNGTC 1 cut(s) 704
DseDI GACNNNNNNGTC 1 cut(s) 704
EaeI YGGCCR 2 cut(s) 103, 372
Eam1104I CTCTTC 2 cut(s) 789, 1217
EarI CTCTTC 2 cut(s) 789, 1217
Ecl136II GAGCTC 1 cut(s) 77
Eco130I CCWWGG 3 cut(s) 100, 273, 476
Eco147I AGGCCT 1 cut(s) 651
Eco24I GRGCYC 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 945
Eco32I GATATC 1 cut(s) 847
Eco47I GGWCC 5 cut(s) 260, 270, 317, 718, 967
Eco53kI GAGCTC 1 cut(s) 77
Eco81I CCTNAGG 1 cut(s) 1098
EcoICRI GAGCTC 1 cut(s) 77
EcoNI CCTNNNNNAGG 1 cut(s) 1097
EcoO109I RGGNCCY 2 cut(s) 718, 967
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 5 cut(s) 256, 358, 388, 498, 1264
EcoRV GATATC 1 cut(s) 847
EcoT14I CCWWGG 3 cut(s) 100, 273, 476
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 3 cut(s) 100, 273, 476
FaeI CATG 8 cut(s) 104, 473, 480, 755, 767, 884, 947, 1123
FaqI GGGAC 4 cut(s) 516, 731, 980, 1229
FatI CATG 8 cut(s) 100, 469, 476, 751, 763, 880, 943, 1119
FauI CCCGC 1 cut(s) 917
Fnu4HI GCNGC 2 cut(s) 423, 1299
FokI GGATG 6 cut(s) 605, 774, 1023, 1181, 1383, 1391
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 2 cut(s) 423, 1299
FspBI CTAG 1 cut(s) 444
GlaI GCGC 2 cut(s) 252, 292
GluI GCNGC 2 cut(s) 423, 1299
GsaI CCCAGC 1 cut(s) 718
GsuI CTGGAG 4 cut(s) 482, 624, 1206, 1295
HaeIII GGCC 5 cut(s) 105, 374, 454, 651, 908
HapII CCGG 1 cut(s) 813
HhaI GCGC 2 cut(s) 253, 293
Hin1II CATG 8 cut(s) 104, 473, 480, 755, 767, 884, 947, 1123
Hin6I GCGC 2 cut(s) 251, 291
HinP1I GCGC 2 cut(s) 251, 291
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 4 cut(s) 157, 824, 947, 1003
HpaII CCGG 1 cut(s) 813
HphI GGTGA 2 cut(s) 704, 1202
Hpy166II GTNNAC 2 cut(s) 417, 772
Hpy188I TCNGA 9 cut(s) 403, 521, 612, 974, 1022, 1041, 1314, 1430, 1439
Hpy188III TCNNGA 8 cut(s) 80, 125, 461, 583, 797, 944, 1081, 1388
Hpy8I GTNNAC 2 cut(s) 417, 772
HpyAV CCTTC 2 cut(s) 1103, 1360
HpyCH4III ACNGT 3 cut(s) 221, 776, 1018
HpyCH4IV ACGT 2 cut(s) 202, 1334
HpyF10VI GCNNNNNNNGC 1 cut(s) 1270
HpyF3I CTNAG 4 cut(s) 36, 53, 114, 1098
HpySE526I ACGT 2 cut(s) 202, 1334
Hsp92II CATG 8 cut(s) 104, 473, 480, 755, 767, 884, 947, 1123
HspAI GCGC 2 cut(s) 251, 291
Kzo9I GATC 8 cut(s) 121, 392, 521, 571, 743, 919, 1309, 1425
LguI GCTCTTC 1 cut(s) 789
LmnI GCTCC 2 cut(s) 238, 501
Lsp1109I GCAGC 2 cut(s) 409, 1310
LweI GCATC 3 cut(s) 849, 1073, 1369
MaeI CTAG 1 cut(s) 444
MaeII ACGT 2 cut(s) 202, 1334
MaeIII GTNAC 5 cut(s) 39, 1180, 1229, 1304, 1330
MalI GATC 8 cut(s) 123, 394, 523, 573, 745, 921, 1311, 1427
MboI GATC 8 cut(s) 121, 392, 521, 571, 743, 919, 1309, 1425
MboII GAAGA 7 cut(s) 371, 493, 776, 868, 1024, 1234, 1382
MflI RGATCY 1 cut(s) 521
MhlI GDGCHC 2 cut(s) 79, 498
MlsI TGGCCA 1 cut(s) 105
MluCI AATT 8 cut(s) 84, 107, 138, 484, 864, 959, 1143, 1234
MluNI TGGCCA 1 cut(s) 105
MlyI GAGTC 2 cut(s) 818, 941
MmeI TCCRAC 2 cut(s) 344, 1264
Mox20I TGGCCA 1 cut(s) 105
MscI TGGCCA 1 cut(s) 105
MseI TTAA 2 cut(s) 428, 1146
MslI CAYNNNNRTG 2 cut(s) 219, 762
Msp20I TGGCCA 1 cut(s) 105
MspA1I CMGCKG 2 cut(s) 569, 1070
MspI CCGG 1 cut(s) 813
MspR9I CCNGG 5 cut(s) 258, 360, 390, 500, 1266
Mva1269I GAATGC 1 cut(s) 444
MvaI CCWGG 5 cut(s) 258, 360, 390, 500, 1266
MwoI GCNNNNNNNGC 1 cut(s) 1270
NcoI CCATGG 2 cut(s) 100, 476
NdeII GATC 8 cut(s) 121, 392, 521, 571, 743, 919, 1309, 1425
NlaIII CATG 8 cut(s) 104, 473, 480, 755, 767, 884, 947, 1123
NlaIV GGNNCC 5 cut(s) 234, 271, 455, 719, 968
NmuCI GTSAC 3 cut(s) 39, 1180, 1229
NspI RCATGY 2 cut(s) 473, 1123
NspV TTCGAA 1 cut(s) 283
PaeI GCATGC 1 cut(s) 473
PagI TCATGA 1 cut(s) 943
PceI AGGCCT 1 cut(s) 651
PciSI GCTCTTC 1 cut(s) 789
PctI GAATGC 1 cut(s) 444
PfeI GAWTC 2 cut(s) 157, 1003
Pfl23II CGTACG 1 cut(s) 851
PflFI GACNNNGTC 1 cut(s) 827
PkrI GCNGC 2 cut(s) 424, 1300
PleI GAGTC 2 cut(s) 818, 941
PpsI GAGTC 2 cut(s) 818, 941
Ppu21I YACGTR 1 cut(s) 203
PpuMI RGGWCCY 2 cut(s) 718, 967
Psp124BI GAGCTC 1 cut(s) 79
Psp5II RGGWCCY 2 cut(s) 718, 967
Psp6I CCWGG 5 cut(s) 256, 358, 388, 498, 1264
PspFI CCCAGC 1 cut(s) 714
PspGI CCWGG 5 cut(s) 256, 358, 388, 498, 1264
PspLI CGTACG 1 cut(s) 851
PspN4I GGNNCC 5 cut(s) 234, 271, 455, 719, 968
PspPI GGNCC 7 cut(s) 260, 270, 317, 453, 718, 907, 967
PspPPI RGGWCCY 2 cut(s) 718, 967
PstI CTGCAG 1 cut(s) 836
PstNI CAGNNNCTG 2 cut(s) 43, 1157
PsuI RGATCY 1 cut(s) 521
PsyI GACNNNGTC 1 cut(s) 827
PvuII CAGCTG 2 cut(s) 569, 1070
RsaI GTAC 6 cut(s) 577, 645, 807, 853, 873, 1260
RsaNI GTAC 6 cut(s) 576, 644, 806, 852, 872, 1259
RseI CAYNNNNRTG 2 cut(s) 219, 762
SacI GAGCTC 1 cut(s) 79
SapI GCTCTTC 1 cut(s) 789
SaqAI TTAA 2 cut(s) 428, 1146
SatI GCNGC 2 cut(s) 423, 1299
Sau3AI GATC 8 cut(s) 121, 392, 521, 571, 743, 919, 1309, 1425
Sau96I GGNCC 7 cut(s) 260, 270, 317, 453, 718, 907, 967
SchI GAGTC 2 cut(s) 818, 941
ScrFI CCNGG 5 cut(s) 258, 360, 390, 500, 1266
SduI GDGCHC 2 cut(s) 79, 498
SfaNI GCATC 3 cut(s) 849, 1073, 1369
SfcI CTRYAG 2 cut(s) 832, 1130
SfuI TTCGAA 1 cut(s) 283
SinI GGWCC 5 cut(s) 260, 270, 317, 718, 967
SmiMI CAYNNNNRTG 2 cut(s) 219, 762
SmlI CTYRAG 1 cut(s) 722
SmoI CTYRAG 1 cut(s) 722
SphI GCATGC 1 cut(s) 473
Sse9I AATT 8 cut(s) 84, 107, 138, 484, 864, 959, 1143, 1234
SseBI AGGCCT 1 cut(s) 651
SsiI CCGC 2 cut(s) 329, 910
SspMI CTAG 1 cut(s) 444
SstI GAGCTC 1 cut(s) 79
StuI AGGCCT 1 cut(s) 651
StyD4I CCNGG 5 cut(s) 256, 358, 388, 498, 1264
StyI CCWWGG 3 cut(s) 100, 273, 476
TaaI ACNGT 3 cut(s) 221, 776, 1018
TaiI ACGT 2 cut(s) 205, 1337
TaqI TCGA 4 cut(s) 30, 283, 742, 986
TasI AATT 8 cut(s) 84, 107, 138, 484, 864, 959, 1143, 1234
TatI WGTACW 3 cut(s) 805, 871, 1258
TfiI GAWTC 2 cut(s) 157, 1003
Tru1I TTAA 2 cut(s) 428, 1146
Tru9I TTAA 2 cut(s) 428, 1146
TscAI CASTG 5 cut(s) 48, 226, 565, 1158, 1189
TseFI GTSAC 3 cut(s) 39, 1180, 1229
TseI GCWGC 2 cut(s) 422, 1298
Tsp45I GTSAC 3 cut(s) 39, 1180, 1229
TspDTI ATGAA 2 cut(s) 561, 776
TspGWI ACGGA 2 cut(s) 839, 889
TspRI CASTG 5 cut(s) 48, 226, 565, 1158, 1189
Tth111I GACNNNGTC 1 cut(s) 827
VpaK11BI GGWCC 5 cut(s) 260, 270, 317, 718, 967
XagI CCTNNNNNAGG 1 cut(s) 1097
XapI RAATTY 4 cut(s) 84, 138, 864, 959
XceI RCATGY 2 cut(s) 473, 1123
XcmI CCANNNNNNNNNTGG 1 cut(s) 546
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.