MD16G1167100.v1.1

Protein pleiotropic regulatory locus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0002996
Physical Location & Seq
Reverse (-)
13902685 .. 13909322
6638 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1167100.v1.1.491

Sequence Viewer

Length: 1443 bp
ATGCCGGGGCCCACATTGGAGATGGAACCAGTGGAGCCACAGTCGCTGAAGAAGCTCAGTCTCAAATCCCTCAAACGATCTCTCGATCTCTTCTCCCGGGCCCAAGGCGAGCTCCCCACTCCCGACCCCGAGAGTAAAACAATTCGCACAAGCCATAAGATAAGCATGGAGTATGTAGGAATTCAACCCATGGCTAGCCAAAAACCGCCTCGTTGGGCTGAGTCTGGTGCGCTGGGAAGTGGTTCTGAAGGGCCTTCCAATGCCCTTGCCCTCACAGATTCTAAGGAAATGCAGACTGGAGGAGCTCAAAACGATTTGGTTGTCAGTCCATCTGCACCAAGGGCACCGAATACTGTTGGTAATTCGGACAGAGACACTGTAGCTGTTTCTGCTCCAGGGTCATCTCACAGGTTTTCAACATCGGCCATGATGGAAAGAATTTCCAGCAGATGGCCATGTCCCGATTGGCATGCTCCTTGGAAGATTTACAGAGTTATTAGCGGTCACTTGGGATGGGTACGATGTATTGCCTTTGACCCAAGTAATAGGTGGTTCTGCACTGGTTCAGCAGACCGCACTATCAAGATTTGGGATGTTGCAACTGGAACTCTACAACTGACAGTGACAGGACACATAGAGCAAATACGAGGCCTTGCAGTTAGCAGCAGGCATACCTATATGTTCTCTGCTGGAGATGACAAACTAGTTAAATGCTGGGATCTTGAACAGAATAAGGTTATCCATTCATATCATGGTCATTTAAGTGGCGTTTACTGCTTGGCTCTTCATCCGACTCTTGATGTTTTACTTACCGGGGGACGTGATTCTGTATGCCGGGTTTGGGATATCCGAAGCAAGACGCAAGTTCATGCATTGTCGGGGCATGACAACACAGTTTGCTCCGTTTTCACTCGACCAACAGATCCACAAGTTGTCACTGGATCTCACGACACAACAATCAAGTTTTGGGACCTTAGATATGTAAAAACAATGTCAACTCTGACACACCATAAAAAGTCTGTGCGTGCAATGGCTCAGCATCCTAGAGAGCATTGTTTTGCATCTGCATCAGCTGATAACATTAAGAAGTTCAACCTCCCAAGAGGCGAATTTTTACACAACATGCTGTCTCAGCAGAAAACCATAATCAATGCAATGGCTGTCAACGAAGATGGGGTTTTGGCCACAGGAGGCGATAATGGGAGCATGTGGTTTTGGGATTGGAAGAGCGGCCACAATTTTCAGCAATCCCAAACAATTGTACAATCCGGCTCGTTGGATAGTGAAGCTGGTATATATGCGCTTTCATACGATGTCACCGGTACGAGGCTGGTGAGTTGTGAAGCCGATAAGACGATCAAGATGTGGAGGCAAGATGAAAATGCCACTCCGGAAACTCACCCTCTCAACTTTAGGCCCCCTAAGGATATTCGACGGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
WD40

Protein Analysis

481

Amino Acids

53.31

Weight (kDa)

8.63

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Gbeta PF25391 134 - 302 2.8e-20 G protein beta WD-40 repeat protein
Beta-prop_WDR41 PF25178 157 - 318 6.4e-12 WDR41
Beta-prop_THOC3 PF25174 160 - 269 2.2e-20 THOC3 beta-propeller domain
WD40 PF00400 161 - 198 1.4e-11 WD domain, G-beta repeat
WD40_Prp19 PF24814 161 - 299 1.2e-23 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 161 - 204 8.8e-06 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_2nd PF25172 161 - 282 4.3e-19 WDR3 second beta-propeller domain
Beta-prop_TEP1_2nd PF25047 161 - 259 1.6e-08 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 162 - 290 1e-17 CDC20/Fizzy WD40 domain
WD40_MABP1-WDR62_2nd PF24782 164 - 241 6.9e-07 MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_1st PF25173 165 - 283 1.2e-26 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 166 - 340 6.2e-40 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 172 - 250 9.2e-12 WDHD1 first WD40 domain
WDR55 PF24796 175 - 329 1e-16 WDR55
Beta-prop_WDR90_POC16_2nd PF23393 175 - 245 2.9e-06 WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 182 - 360 1.4e-16 WDR36/Utp21 first beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 207 - 290 4.4e-06 CAF1B/HIR1 beta-propeller domain
EIF3I PF24805 207 - 292 2e-06 EIF3I
Beta-prop_WDR36-Utp21_2nd PF25168 209 - 361 3.1e-15 WDR36/Utp21 second beta-propeller domain
WD40_RFWD3 PF23419 211 - 302 2.8e-07 E3 ubiquitin-protein ligase RFWD3 WD40 domain
Beta-prop_THOC3 PF25174 218 - 415 5.6e-26 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 238 - 456 9.3e-21 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 243 - 360 1.2e-23 WDR3 first beta-propeller domain
WD40 PF00400 245 - 282 1.9e-08 WD domain, G-beta repeat
Beta-prop_EML PF23409 250 - 465 1e-14 Echinoderm microtubule-associated protein first beta-propeller
WD40_MABP1-WDR62_2nd PF24782 252 - 455 5.3e-08 MABP1/WDR62 second WD40 domain
WD40_Prp19 PF24814 255 - 456 1.5e-29 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 257 - 418 3e-14 WDHD1 first WD40 domain
Beta-prop_TEP1_2nd PF25047 267 - 349 1e-09 TEP-1 second beta-propeller
Beta-prop_WDR3_2nd PF25172 280 - 332 9.3e-06 WDR3 second beta-propeller domain
WD40 PF00400 287 - 324 1.2e-06 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 289 - 363 5.4e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_EML_2 PF23414 303 - 458 2e-08 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd PF23393 307 - 420 3.7e-07 WDR90/POC16, second beta-propeller
WD40_Gbeta PF25391 308 - 456 5.1e-07 G protein beta WD-40 repeat protein
WDR55 PF24796 329 - 415 5.5e-07 WDR55
Beta-prop_WDR5 PF25175 333 - 461 3.6e-10 WDR5 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 341 - 461 3.7e-06 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 353 - 456 5.4e-07 WDR3 first beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 343
AccB7I CCANNNNNTGG 1 cut(s) 450
AccBSI CCGCTC 1 cut(s) 1230
AccIII TCCGGA 1 cut(s) 1390
AciI CCGC 4 cut(s) 206, 501, 574, 1230
AclWI GGATC 3 cut(s) 726, 917, 949
AcoI YGGCCR 4 cut(s) 423, 452, 1182, 1231
AcsI RAATTY 3 cut(s) 180, 438, 1109
AcuI CTGAAG 2 cut(s) 68, 267
AfaI GTAC 3 cut(s) 519, 1263, 1324
AfiI CCNNNNNNNGG 3 cut(s) 450, 841, 1326
AgeI ACCGGT 1 cut(s) 1319
AgsI TTSAA 4 cut(s) 185, 417, 725, 1093
AhlI ACTAGT 1 cut(s) 703
AjiI CACGTC 1 cut(s) 821
AjnI CCWGG 1 cut(s) 394
AluBI AGCT 6 cut(s) 55, 112, 305, 383, 1073, 1289
AluI AGCT 6 cut(s) 55, 112, 305, 383, 1073, 1289
Alw21I GWGCWC 2 cut(s) 114, 307
Alw26I GTCTC 3 cut(s) 65, 366, 1134
AlwI GGATC 3 cut(s) 726, 917, 949
AlwNI CAGNNNCTG 1 cut(s) 46
Ama87I CYCGRG 2 cut(s) 96, 128
Aor13HI TCCGGA 1 cut(s) 1390
AoxI GGCC 9 cut(s) 8, 99, 251, 423, 452, 649, 1182, 1231, 1415
ApaI GGGCCC 2 cut(s) 12, 103
ApeKI GCWGC 1 cut(s) 663
ApoI RAATTY 3 cut(s) 180, 438, 1109
AsiGI ACCGGT 1 cut(s) 1319
Asp700I GAANNNNTTC 1 cut(s) 241
AspLEI GCGC 2 cut(s) 232, 1303
AspS9I GGNCC 7 cut(s) 8, 9, 99, 100, 251, 970, 1416
AsuC2I CCSGG 5 cut(s) 6, 97, 98, 814, 836
AsuHPI GGTGA 3 cut(s) 1309, 1345, 1391
AsuNHI GCTAGC 1 cut(s) 194
AvaI CYCGRG 2 cut(s) 96, 128
AvaII GGWCC 1 cut(s) 970
AxyI CCTNAGG 1 cut(s) 1422
BaeGI GKGCMC 3 cut(s) 12, 103, 346
BalI TGGCCA 2 cut(s) 454, 1184
BanI GGYRCC 1 cut(s) 343
BanII GRGCYC 4 cut(s) 12, 103, 114, 307
Bbv12I GWGCWC 2 cut(s) 114, 307
BbvI GCAGC 1 cut(s) 675
BccI CCATC 6 cut(s) 16, 337, 424, 444, 507, 1166
BcgI CGANNNNNNTGC 2 cut(s) 452, 486
BciT130I CCWGG 1 cut(s) 396
BcnI CCSGG 5 cut(s) 6, 97, 98, 814, 836
BcoDI GTCTC 3 cut(s) 65, 366, 1134
BcuI ACTAGT 1 cut(s) 703
BfaI CTAG 4 cut(s) 195, 704, 1044, 1441
BfmI CTRYAG 1 cut(s) 378
BisI GCNGC 2 cut(s) 664, 1231
BlpI GCTNAGC 1 cut(s) 1035
BlsI GCNGC 2 cut(s) 665, 1232
Bme1390I CCNGG 6 cut(s) 6, 97, 98, 396, 814, 836
Bme18I GGWCC 1 cut(s) 970
BmeT110I CYCGRG 2 cut(s) 96, 128
BmgBI CACGTC 1 cut(s) 821
BmgT120I GGNCC 7 cut(s) 8, 9, 99, 100, 251, 970, 1416
BmiI GGNNCC 8 cut(s) 9, 10, 27, 36, 101, 345, 971, 1418
BmrFI CCNGG 6 cut(s) 6, 97, 98, 396, 814, 836
BmsI GCATC 3 cut(s) 1048, 1070, 1076
BmtI GCTAGC 1 cut(s) 198
BpmI CTGGAG 3 cut(s) 318, 378, 711
Bpu1102I GCTNAGC 1 cut(s) 1035
BpuMI CCSGG 5 cut(s) 6, 97, 98, 814, 836
BsaJI CCNNGG 8 cut(s) 5, 96, 103, 189, 338, 395, 476, 813
BsaWI WCCGGW 2 cut(s) 1319, 1390
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 3 cut(s) 450, 841, 1326
Bse118I RCCGGY 1 cut(s) 1319
Bse1I ACTGG 5 cut(s) 29, 301, 565, 607, 943
Bse21I CCTNAGG 1 cut(s) 1422
Bse3DI GCAATG 2 cut(s) 1035, 1161
BseAI TCCGGA 1 cut(s) 1390
BseBI CCWGG 1 cut(s) 396
BseDI CCNNGG 8 cut(s) 5, 96, 103, 189, 338, 395, 476, 813
BseGI GGATG 4 cut(s) 518, 598, 787, 1039
BseLI CCNNNNNNNGG 3 cut(s) 450, 841, 1326
BseMI GCAATG 2 cut(s) 1035, 1161
BseMII CTCAG 4 cut(s) 70, 210, 1049, 1145
BseNI ACTGG 5 cut(s) 29, 301, 565, 607, 943
BseRI GAGGAG 1 cut(s) 315
BseSI GKGCMC 3 cut(s) 12, 103, 346
BseXI GCAGC 1 cut(s) 675
BseYI CCCAGC 2 cut(s) 232, 714
BsgI GTGCAG 2 cut(s) 318, 541
BshFI GGCC 9 cut(s) 10, 101, 253, 425, 454, 651, 1184, 1233, 1417
BshNI GGYRCC 1 cut(s) 343
BshTI ACCGGT 1 cut(s) 1319
BsiHKAI GWGCWC 2 cut(s) 114, 307
BsiHKCI CYCGRG 2 cut(s) 96, 128
BsiSI CCGG 7 cut(s) 5, 97, 813, 835, 1269, 1320, 1391
BslFI GGGAC 3 cut(s) 444, 831, 983
BslI CCNNNNNNNGG 3 cut(s) 450, 841, 1326
BsmAI GTCTC 3 cut(s) 65, 366, 1134
BsmFI GGGAC 3 cut(s) 444, 831, 983
BsnI GGCC 9 cut(s) 10, 101, 253, 425, 454, 651, 1184, 1233, 1417
BsoBI CYCGRG 2 cut(s) 96, 128
Bsp120I GGGCCC 2 cut(s) 8, 99
Bsp1286I GDGCHC 5 cut(s) 12, 103, 114, 307, 346
Bsp13I TCCGGA 1 cut(s) 1390
Bsp1407I TGTACA 1 cut(s) 1261
Bsp143I GATC 6 cut(s) 77, 85, 718, 922, 941, 1356
Bsp1720I GCTNAGC 1 cut(s) 1035
Bsp19I CCATGG 1 cut(s) 189
BspACI CCGC 4 cut(s) 206, 501, 574, 1230
BspANI GGCC 9 cut(s) 10, 101, 253, 425, 454, 651, 1184, 1233, 1417
BspCNI CTCAG 4 cut(s) 69, 211, 1048, 1144
BspEI TCCGGA 1 cut(s) 1390
BspLI GGNNCC 8 cut(s) 9, 10, 27, 36, 101, 345, 971, 1418
BspOI GCTAGC 1 cut(s) 198
BspPI GGATC 3 cut(s) 726, 917, 949
BspQI GCTCTTC 2 cut(s) 789, 1220
BspT107I GGYRCC 1 cut(s) 343
BsrBI CCGCTC 1 cut(s) 1230
BsrDI GCAATG 2 cut(s) 1035, 1161
BsrFI RCCGGY 1 cut(s) 1319
BsrGI TGTACA 1 cut(s) 1261
BsrI ACTGG 5 cut(s) 29, 301, 565, 607, 943
BssAI RCCGGY 1 cut(s) 1319
BssECI CCNNGG 8 cut(s) 5, 96, 103, 189, 338, 395, 476, 813
BssMI GATC 6 cut(s) 77, 85, 718, 922, 941, 1356
BssT1I CCWWGG 4 cut(s) 103, 189, 338, 476
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 6 cut(s) 42, 355, 379, 622, 895, 1437
Bst6I CTCTTC 3 cut(s) 95, 789, 1220
BstAUI TGTACA 1 cut(s) 1261
BstC8I GCNNGC 5 cut(s) 110, 196, 471, 668, 1026
BstDEI CTNAG 7 cut(s) 56, 219, 282, 974, 1035, 1131, 1422
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 4 cut(s) 518, 598, 787, 1039
BstHHI GCGC 2 cut(s) 232, 1303
BstKTI GATC 6 cut(s) 80, 88, 721, 925, 944, 1359
BstMAI GTCTC 3 cut(s) 65, 366, 1134
BstMBI GATC 6 cut(s) 77, 85, 718, 922, 941, 1356
BstMWI GCNNNNNNNGC 6 cut(s) 43, 52, 341, 389, 774, 1132
BstNI CCWGG 1 cut(s) 396
BstNSI RCATGY 3 cut(s) 473, 1126, 1210
BstSCI CCNGG 6 cut(s) 4, 95, 96, 394, 812, 834
BstSFI CTRYAG 1 cut(s) 378
BstSLI GKGCMC 3 cut(s) 12, 103, 346
BstV1I GCAGC 1 cut(s) 675
BstX2I RGATCY 3 cut(s) 718, 922, 941
BstYI RGATCY 3 cut(s) 718, 922, 941
Bsu36I CCTNAGG 1 cut(s) 1422
BsuRI GGCC 9 cut(s) 10, 101, 253, 425, 454, 651, 1184, 1233, 1417
BtgI CCRYGG 1 cut(s) 189
BtrI CACGTC 1 cut(s) 821
BtsCI GGATG 4 cut(s) 518, 598, 787, 1039
BtsIMutI CAGTG 5 cut(s) 36, 375, 558, 627, 936
Cac8I GCNNGC 5 cut(s) 110, 196, 471, 668, 1026
CaiI CAGNNNCTG 1 cut(s) 46
CfoI GCGC 2 cut(s) 232, 1303
Cfr10I RCCGGY 1 cut(s) 1319
Cfr13I GGNCC 7 cut(s) 8, 9, 99, 100, 251, 970, 1416
Cfr9I CCCGGG 1 cut(s) 96
CseI GACGC 1 cut(s) 868
Csp6I GTAC 3 cut(s) 518, 1262, 1323
CspAI ACCGGT 1 cut(s) 1319
CviQI GTAC 3 cut(s) 518, 1262, 1323
DdeI CTNAG 7 cut(s) 56, 219, 282, 974, 1035, 1131, 1422
DpnI GATC 6 cut(s) 79, 87, 720, 924, 943, 1358
DpnII GATC 6 cut(s) 77, 85, 718, 922, 941, 1356
EaeI YGGCCR 4 cut(s) 423, 452, 1182, 1231
Eam1104I CTCTTC 3 cut(s) 95, 789, 1220
EarI CTCTTC 3 cut(s) 95, 789, 1220
Ecl136II GAGCTC 2 cut(s) 112, 305
Eco130I CCWWGG 4 cut(s) 103, 189, 338, 476
Eco147I AGGCCT 1 cut(s) 651
Eco24I GRGCYC 4 cut(s) 12, 103, 114, 307
Eco32I GATATC 1 cut(s) 847
Eco47I GGWCC 1 cut(s) 970
Eco53kI GAGCTC 2 cut(s) 112, 305
Eco57I CTGAAG 2 cut(s) 68, 267
Eco81I CCTNAGG 1 cut(s) 1422
Eco88I CYCGRG 2 cut(s) 96, 128
EcoICRI GAGCTC 2 cut(s) 112, 305
EcoO109I RGGNCCY 4 cut(s) 8, 251, 970, 1416
EcoRI GAATTC 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 394
EcoRV GATATC 1 cut(s) 847
EcoT14I CCWWGG 4 cut(s) 103, 189, 338, 476
EcoT22I ATGCAT 1 cut(s) 874
EcoT38I GRGCYC 4 cut(s) 12, 103, 114, 307
ErhI CCWWGG 4 cut(s) 103, 189, 338, 476
FaqI GGGAC 3 cut(s) 444, 831, 983
Fnu4HI GCNGC 2 cut(s) 664, 1231
FokI GGATG 4 cut(s) 525, 605, 774, 1026
FriOI GRGCYC 4 cut(s) 12, 103, 114, 307
Fsp4HI GCNGC 2 cut(s) 664, 1231
FspBI CTAG 4 cut(s) 195, 704, 1044, 1441
GlaI GCGC 2 cut(s) 231, 1302
GluI GCNGC 2 cut(s) 664, 1231
GsaI CCCAGC 2 cut(s) 236, 718
GsuI CTGGAG 3 cut(s) 318, 378, 711
HaeIII GGCC 9 cut(s) 10, 101, 253, 425, 454, 651, 1184, 1233, 1417
HapII CCGG 7 cut(s) 5, 97, 813, 835, 1269, 1320, 1391
HgaI GACGC 1 cut(s) 868
HhaI GCGC 2 cut(s) 232, 1303
Hin6I GCGC 2 cut(s) 230, 1301
HinP1I GCGC 2 cut(s) 230, 1301
HincII GTYRAC 2 cut(s) 996, 1165
HindII GTYRAC 2 cut(s) 996, 1165
HinfI GANTC 4 cut(s) 221, 278, 793, 824
HpaII CCGG 7 cut(s) 5, 97, 813, 835, 1269, 1320, 1391
HphI GGTGA 3 cut(s) 1309, 1345, 1391
Hpy166II GTNNAC 3 cut(s) 772, 996, 1165
Hpy188I TCNGA 5 cut(s) 247, 367, 792, 851, 1002
Hpy188III TCNNGA 9 cut(s) 83, 122, 461, 583, 722, 797, 947, 1360, 1391
Hpy8I GTNNAC 3 cut(s) 772, 996, 1165
Hpy99I CGWCG 1 cut(s) 1437
HpyAV CCTTC 2 cut(s) 242, 264
HpyCH4III ACNGT 6 cut(s) 42, 355, 379, 622, 895, 1437
HpyCH4IV ACGT 1 cut(s) 820
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 52, 341, 389, 774, 1132
HpyF3I CTNAG 7 cut(s) 56, 219, 282, 974, 1035, 1131, 1422
HpySE526I ACGT 1 cut(s) 820
HspAI GCGC 2 cut(s) 230, 1301
Kpn2I TCCGGA 1 cut(s) 1390
Kzo9I GATC 6 cut(s) 77, 85, 718, 922, 941, 1356
LguI GCTCTTC 2 cut(s) 789, 1220
LmnI GCTCC 7 cut(s) 34, 117, 302, 397, 478, 905, 1203
Lsp1109I GCAGC 1 cut(s) 675
LweI GCATC 3 cut(s) 1048, 1070, 1076
MaeI CTAG 4 cut(s) 195, 704, 1044, 1441
MaeII ACGT 1 cut(s) 820
MaeIII GTNAC 4 cut(s) 503, 622, 934, 1315
MalI GATC 6 cut(s) 79, 87, 720, 924, 943, 1358
MbiI CCGCTC 1 cut(s) 1230
MboI GATC 6 cut(s) 77, 85, 718, 922, 941, 1356
MboII GAAGA 6 cut(s) 61, 82, 493, 776, 1181, 1237
MfeI CAATTG 1 cut(s) 1257
MflI RGATCY 3 cut(s) 718, 922, 941
MhlI GDGCHC 5 cut(s) 12, 103, 114, 307, 346
MlsI TGGCCA 2 cut(s) 454, 1184
MluCI AATT 7 cut(s) 141, 180, 361, 438, 1109, 1237, 1257
MluNI TGGCCA 2 cut(s) 454, 1184
MlyI GAGTC 2 cut(s) 230, 787
MmeI TCCRAC 2 cut(s) 815, 1257
Mox20I TGGCCA 2 cut(s) 454, 1184
Mph1103I ATGCAT 1 cut(s) 874
MroI TCCGGA 1 cut(s) 1390
MroXI GAANNNNTTC 1 cut(s) 241
MscI TGGCCA 2 cut(s) 454, 1184
MseI TTAA 3 cut(s) 708, 761, 1083
MslI CAYNNNNRTG 1 cut(s) 762
Msp20I TGGCCA 2 cut(s) 454, 1184
MspA1I CMGCKG 1 cut(s) 1073
MspI CCGG 7 cut(s) 5, 97, 813, 835, 1269, 1320, 1391
MspR9I CCNGG 6 cut(s) 6, 97, 98, 396, 814, 836
MunI CAATTG 1 cut(s) 1257
MvaI CCWGG 1 cut(s) 396
MwoI GCNNNNNNNGC 6 cut(s) 43, 52, 341, 389, 774, 1132
NciI CCSGG 5 cut(s) 6, 97, 98, 814, 836
NcoI CCATGG 1 cut(s) 189
NdeII GATC 6 cut(s) 77, 85, 718, 922, 941, 1356
NheI GCTAGC 1 cut(s) 194
NlaIV GGNNCC 8 cut(s) 9, 10, 27, 36, 101, 345, 971, 1418
NmuCI GTSAC 4 cut(s) 503, 622, 934, 1315
NsiI ATGCAT 1 cut(s) 874
NspI RCATGY 3 cut(s) 473, 1126, 1210
PaeI GCATGC 1 cut(s) 473
PceI AGGCCT 1 cut(s) 651
PciSI GCTCTTC 2 cut(s) 789, 1220
PdmI GAANNNNTTC 1 cut(s) 241
PfeI GAWTC 2 cut(s) 278, 824
PflMI CCANNNNNTGG 1 cut(s) 450
PinAI ACCGGT 1 cut(s) 1319
PkrI GCNGC 2 cut(s) 665, 1232
PleI GAGTC 2 cut(s) 229, 787
PpsI GAGTC 2 cut(s) 229, 787
PpuMI RGGWCCY 1 cut(s) 970
Psp124BI GAGCTC 2 cut(s) 114, 307
Psp5II RGGWCCY 1 cut(s) 970
Psp6I CCWGG 1 cut(s) 394
PspFI CCCAGC 2 cut(s) 232, 714
PspGI CCWGG 1 cut(s) 394
PspN4I GGNNCC 8 cut(s) 9, 10, 27, 36, 101, 345, 971, 1418
PspOMI GGGCCC 2 cut(s) 8, 99
PspPI GGNCC 7 cut(s) 8, 9, 99, 100, 251, 970, 1416
PspPPI RGGWCCY 1 cut(s) 970
PstNI CAGNNNCTG 1 cut(s) 46
PsuI RGATCY 3 cut(s) 718, 922, 941
PvuII CAGCTG 1 cut(s) 1073
RsaI GTAC 3 cut(s) 519, 1263, 1324
RsaNI GTAC 3 cut(s) 518, 1262, 1323
RseI CAYNNNNRTG 1 cut(s) 762
SacI GAGCTC 2 cut(s) 114, 307
SapI GCTCTTC 2 cut(s) 789, 1220
SaqAI TTAA 3 cut(s) 708, 761, 1083
SatI GCNGC 2 cut(s) 664, 1231
Sau3AI GATC 6 cut(s) 77, 85, 718, 922, 941, 1356
Sau96I GGNCC 7 cut(s) 8, 9, 99, 100, 251, 970, 1416
SchI GAGTC 2 cut(s) 230, 787
ScrFI CCNGG 6 cut(s) 6, 97, 98, 396, 814, 836
SduI GDGCHC 5 cut(s) 12, 103, 114, 307, 346
SfaNI GCATC 3 cut(s) 1048, 1070, 1076
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 1 cut(s) 970
SmaI CCCGGG 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 762
SpeI ACTAGT 1 cut(s) 703
SphI GCATGC 1 cut(s) 473
Sse9I AATT 7 cut(s) 141, 180, 361, 438, 1109, 1237, 1257
SseBI AGGCCT 1 cut(s) 651
SsiI CCGC 4 cut(s) 206, 501, 574, 1230
SspMI CTAG 4 cut(s) 195, 704, 1044, 1441
SstI GAGCTC 2 cut(s) 114, 307
StuI AGGCCT 1 cut(s) 651
StyD4I CCNGG 6 cut(s) 4, 95, 96, 394, 812, 834
StyI CCWWGG 4 cut(s) 103, 189, 338, 476
TaaI ACNGT 6 cut(s) 42, 355, 379, 622, 895, 1437
TaiI ACGT 1 cut(s) 823
TaqI TCGA 3 cut(s) 84, 913, 1432
TasI AATT 7 cut(s) 141, 180, 361, 438, 1109, 1237, 1257
TatI WGTACW 1 cut(s) 1261
TauI GCSGC 1 cut(s) 1233
TfiI GAWTC 2 cut(s) 278, 824
Tru1I TTAA 3 cut(s) 708, 761, 1083
Tru9I TTAA 3 cut(s) 708, 761, 1083
TscAI CASTG 5 cut(s) 36, 382, 565, 627, 943
TseFI GTSAC 4 cut(s) 503, 622, 934, 1315
TseI GCWGC 1 cut(s) 663
Tsp45I GTSAC 4 cut(s) 503, 622, 934, 1315
TspDTI ATGAA 5 cut(s) 735, 776, 857, 1296, 1392
TspGWI ACGGA 1 cut(s) 892
TspMI CCCGGG 1 cut(s) 96
TspRI CASTG 5 cut(s) 36, 382, 565, 627, 943
Van91I CCANNNNNTGG 1 cut(s) 450
VpaK11BI GGWCC 1 cut(s) 970
XapI RAATTY 3 cut(s) 180, 438, 1109
XceI RCATGY 3 cut(s) 473, 1126, 1210
XcmI CCANNNNNNNNNTGG 4 cut(s) 19, 462, 546, 749
XmaI CCCGGG 1 cut(s) 96
XmnI GAANNNNTTC 1 cut(s) 241
XspI CTAG 4 cut(s) 195, 704, 1044, 1441
Zsp2I ATGCAT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.